Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC22A6 Sequence: fasta or formatted (506aa) NCBI GI: 24497478
Description:

solute carrier family 22 member 6 isoform c

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [563aa] solute carrier family 22 member 6 isoform a
alt prot [550aa] solute carrier family 22 member 6 isoform b
alt prot [519aa] solute carrier family 22 member 6 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         46           2
 C cysteine            2.6         13           1
 D aspartate           2.6         13           1
 E glutamate           3.4         17           2
 F phenylalanine       4.9         25           2
 G glycine             8.1         41           2
 H histidine           2.0         10           2
 I isoleucine          4.3         22           1
 K lysine              2.4         12           1
 L leucine            15.0         76           3
 M methionine          3.0         15           1
 N asparagine          3.4         17           1
 P proline             4.7         24           2
 Q glutamine           6.1         31           3
 R arginine            5.5         28           2
 S serine              5.9         30           3
 T threonine           5.5         28           1
 V valine              6.7         34           2
 W tryptophan          1.8          9           1
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 22 member 6 isoform c 
SLC22A6               0.991   solute carrier family 22 member 6 isoform d 
SLC22A6               0.979   solute carrier family 22 member 6 isoform b 
SLC22A6               0.970   solute carrier family 22 member 6 isoform a 
SLC22A8               0.459   solute carrier family 22 member 8 
SLC22A20              0.435   solute carrier family 22, member 20 
SLC22A12              0.397   urate anion exchanger 1 isoform a 
SLC22A11              0.365   solute carrier family 22 member 11 
SLC22A10              0.352   solute carrier family 22, member 10 
SLC22A24              0.347   solute carrier family 22, member 24 
SLC22A25              0.312   putative UST1-like organic anion transporter 
SLC22A7               0.305   solute carrier family 22 member 7 isoform a 
SLC22A7               0.300   solute carrier family 22 member 7 isoform b 
SLC22A9               0.294   solute carrier family 22 (organic anion/cation trans...
SLC22A13              0.249   solute carrier family 22 (organic anion transporter...
SLC22A3               0.213   solute carrier family 22 member 3 
SLC22A12              0.205   urate anion exchanger 1 isoform b 
SLC22A2               0.194   solute carrier family 22 member 2 
SLC22A1               0.191   solute carrier family 22 member 1 isoform a 
SLC22A1               0.187   solute carrier family 22 member 1 isoform b 
SLC22A5               0.176   solute carrier family 22 member 5 
SLC22A16              0.168   solute carrier family 22, member 16 
SLC22A14              0.167   organic cation transporter like 4 
SLC22A4               0.156   solute carrier family 22 member 4 
SLC22A15              0.138   solute carrier family 22, member 15 
SLC22A23              0.086   solute carrier family 22, member 23 isoform a [Homo...
SLC22A17              0.082   solute carrier family 22, member 17 isoform b 
SVOP                  0.081   SV2 related protein 
SVOPL                 0.078   SVOP-like isoform 1 
LOC146429             0.076   PREDICTED: hypothetical protein LOC146429 isoform 6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press