Guide to the Human Genome
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Name: SLC10A4 Sequence: fasta or formatted (437aa) NCBI GI: 24308414
Description:

solute carrier family 10, member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         42           2
 C cysteine            2.5         11           2
 D aspartate           3.7         16           1
 E glutamate           3.0         13           3
 F phenylalanine       4.3         19           1
 G glycine             8.7         38           2
 H histidine           1.6          7           1
 I isoleucine          5.0         22           2
 K lysine              2.5         11           2
 L leucine            16.5         72           2
 M methionine          3.7         16           2
 N asparagine          3.2         14           1
 P proline             8.2         36           2
 Q glutamine           1.6          7           1
 R arginine            1.8          8           2
 S serine              6.6         29           2
 T threonine           6.6         29           2
 V valine              6.2         27           2
 W tryptophan          1.4          6           1
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 10, member 4 
SLC10A1               0.234   solute carrier family 10, member 1 
SLC10A2               0.223   solute carrier family 10 (sodium/bile acid cotranspor...
SLC10A6               0.211   sodium-dependent organic anion transporter 
SLC10A5               0.128   solute carrier family 10 (sodium/bile acid cotranspo...
SLC10A3               0.111   solute carrier family 10, member 3 isoform 1 
SLC10A3               0.111   solute carrier family 10, member 3 isoform 2 
SLC10A3               0.111   solute carrier family 10, member 3 isoform 1 
UBXN11                0.026   socius isoform 3 
UBXN11                0.026   socius isoform 1 
UBXN11                0.026   socius isoform 2 
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.019   SWI/SNF-related matrix-associated actin-dependent re...
RBM12                 0.019   RNA binding motif protein 12 
RBM12                 0.019   RNA binding motif protein 12 
TPRX1                 0.019   tetra-peptide repeat homeobox 
STRN4                 0.017   zinedin isoform 2 
STRN4                 0.017   zinedin isoform 1 
ZNF358                0.017   zinc finger protein 358 
BTBD11                0.017   BTB (POZ) domain containing 11 isoform a 
EML3                  0.017   echinoderm microtubule associated protein like 3 [H...
SPAG8                 0.016   sperm associated antigen 8 isoform 1 
SPAG8                 0.016   sperm associated antigen 8 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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