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Search of human proteins with 24234711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24234711 paired-like homeodomain transcription factor 2
isoform a [Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 554 e-158
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 532 e-151
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 524 e-149
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 360 e-100
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 297 6e-81
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 120 1e-27
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 112 4e-25
gi|24497589 aristaless related homeobox [Homo sapiens] 107 1e-23
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 105 5e-23
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 104 9e-23
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 103 1e-22
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 103 1e-22
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 100 1e-21
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 100 2e-21
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 93 2e-19
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 93 2e-19
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 93 2e-19
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 93 2e-19
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 93 3e-19
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 93 3e-19
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 92 5e-19
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 92 5e-19
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 91 8e-19
gi|14149760 orthopedia homeobox [Homo sapiens] 91 8e-19
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 90 2e-18
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 90 2e-18
gi|12707580 paired-like homeobox 2b [Homo sapiens] 87 1e-17
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 87 1e-17
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 87 1e-17
gi|46249382 paired-like homeobox 2a [Homo sapiens] 87 2e-17
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 554 bits (1428), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQR 60
METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQR
Sbjct: 1 METNCRKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQR 60
Query: 61 NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQP 120
NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQP
Sbjct: 61 NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQP 120
Query: 121 YDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSM 180
YDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSM
Sbjct: 121 YDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSM 180
Query: 181 VPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRL 240
VPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRL
Sbjct: 181 VPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRL 240
Query: 241 KAKQHSSFGYASVQNPASNLSACQYAVDRPV 271
KAKQHSSFGYASVQNPASNLSACQYAVDRPV
Sbjct: 241 KAKQHSSFGYASVQNPASNLSACQYAVDRPV 271
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 532 bits (1371), Expect = e-151
Identities = 271/317 (85%), Positives = 271/317 (85%), Gaps = 46/317 (14%)
Query: 1 METNCRKLVSACVQL--------------------------------------------- 15
METNCRKLVSACVQL
Sbjct: 1 METNCRKLVSACVQLGVQPAAVECLFSKDSEIKKVEFTDSPESRKEAASSKFFPRQHPGA 60
Query: 16 -EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 74
EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV
Sbjct: 61 NEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 120
Query: 75 WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWA 134
WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWA
Sbjct: 121 WTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWA 180
Query: 135 AKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLN 194
AKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLN
Sbjct: 181 AKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLN 240
Query: 195 SLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQ 254
SLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQ
Sbjct: 241 SLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQ 300
Query: 255 NPASNLSACQYAVDRPV 271
NPASNLSACQYAVDRPV
Sbjct: 301 NPASNLSACQYAVDRPV 317
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 524 bits (1350), Expect = e-149
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 16 EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 75
EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW
Sbjct: 69 EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 128
Query: 76 TNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
TNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA
Sbjct: 129 TNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 188
Query: 136 KGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNS 195
KGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNS
Sbjct: 189 KGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNS 248
Query: 196 LNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN 255
LNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN
Sbjct: 249 LNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN 308
Query: 256 PASNLSACQYAVDRPV 271
PASNLSACQYAVDRPV
Sbjct: 309 PASNLSACQYAVDRPV 324
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 360 bits (925), Expect = e-100
Identities = 182/239 (76%), Positives = 201/239 (84%), Gaps = 7/239 (2%)
Query: 29 GAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 88
GA+DP+KKK+QRRQRTHFTSQQLQELEATFQRNRYPDMS REEIAVWTNLTE RVRVWFK
Sbjct: 79 GADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFK 138
Query: 89 NRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMY-PGYSYNNWAAKGLTSASLSTKS 147
NRRAKWRKRERNQQ +LCK G+ PQF+GL+QPY+D+Y GYSYNNWAAK L A LSTKS
Sbjct: 139 NRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPAPLSTKS 198
Query: 148 FPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSL 207
F FFNSM +PLSSQSMFS P+SISSM+M SSM P AV G+P S LNN+NNL+ SL
Sbjct: 199 FTFFNSM--SPLSSQSMFSAPSSISSMTMPSSMGPGAVPGMPNS---GLNNINNLTGSSL 253
Query: 208 NSAVPTPACPYAPPTPPY-VYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLSACQY 265
NSA+ ACPY P PY VYRDTCNSSLASLRLK+KQHSSFGY +Q PAS L+ACQY
Sbjct: 254 NSAMSPGACPYGTPASPYSVYRDTCNSSLASLRLKSKQHSSFGYGGLQGPASGLNACQY 312
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 297 bits (761), Expect = 6e-81
Identities = 160/253 (63%), Positives = 187/253 (73%), Gaps = 16/253 (6%)
Query: 31 EDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 90
ED S KK+QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR
Sbjct: 54 EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 113
Query: 91 RAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPF 150
RAKWRKRER+QQAELCK F GL+ PY+++YPGYSY NW K L + L+ K+FPF
Sbjct: 114 RAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL-APPLAAKTFPF 172
Query: 151 -FNSMNVNPLSSQSMFSPPNSI-SSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLN 208
FNS+NV PL+SQ +FSPP+SI +SM S++ P V G PG+ L+ +++
Sbjct: 173 AFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG-PGALQGLGGGPPGLAPAAVS 231
Query: 209 SAVPTPACPY--------APPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN--PAS 258
S +CPY A + PYVYRD CNSSLASLRLKAKQH+SF Y +V PA+
Sbjct: 232 SG--AVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAA 289
Query: 259 NLSACQYAVDRPV 271
NLS CQYAV+RPV
Sbjct: 290 NLSPCQYAVERPV 302
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 120 bits (301), Expect = 1e-27
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 25/246 (10%)
Query: 4 NCRKLVSACVQLEKDKSQQGKNEDVGAEDPSK--KKRQRRQRTHFTSQQLQELEATFQRN 61
NC L + V K ++G+ +++G + S ++RR RT FTS QL+ELE FQ+
Sbjct: 98 NCNSLRMSPV---KGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKT 154
Query: 62 RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPY 121
YPD+ RE++A+ T LTEARV+VWF+NRRAKWRKRER Q + K+ F ++ + P
Sbjct: 155 HYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPR 214
Query: 122 DDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMV 181
D YP N WA + +++ P S + P S SP S S+
Sbjct: 215 TDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMTPYS----HSPRTDSSYTGFSNHQ- 269
Query: 182 PSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLK 241
+ + VP LNN + SL + +A T P R +SS+A LR+K
Sbjct: 270 -NQFSHVP---------LNNFFTDSLLTGATN---GHAFETKPEFERR--SSSIAVLRMK 314
Query: 242 AKQHSS 247
AK+H++
Sbjct: 315 AKEHTA 320
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 112 bits (279), Expect = 4e-25
Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 27/223 (12%)
Query: 30 AEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 89
A+ S K ++RR RT FTS QL+ELE FQ+ YPD+ RE++A+ T+LTEARV+VWF+N
Sbjct: 205 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 264
Query: 90 RRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMY-----PGYSYNNWAAKGLTSASLS 144
RRAKWRKRER Q + + F + + + Y P + NN AA + + +
Sbjct: 265 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP 324
Query: 145 TKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSS 204
P S + + PP S +S V A + V + + SL +L S
Sbjct: 325 CDPVPACMSPHAH---------PPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASL-S 374
Query: 205 PSLNSAVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSS 247
P LN Y P D SS+A+LR+KAK+HS+
Sbjct: 375 PGLNG--------YELNGEP----DRKTSSIAALRMKAKEHSA 405
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 107 bits (267), Expect = 1e-23
Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 30 AEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 89
+E+ K++QRR RT FTS QL+ELE FQ+ YPD+ TREE+A+ +LTEARV+VWF+N
Sbjct: 319 SEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQN 378
Query: 90 RRAKWRKRERNQQAELCKNGF---GP-QFNGLMQPYDDMYPGYSYNNWAAKGLTSASLST 145
RRAKWRKRE+ A+ G GP + PY D P ++ T+A+ +
Sbjct: 379 RRAKWRKREK-AGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAA 437
Query: 146 KSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSM------VPSAVTGVPGSSLNSLNNL 199
+ F S+ P S+ S P S + + +S+ + P+ ++ G +++ L
Sbjct: 438 AA--AFPSLPPPPGSA----SLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPL 491
Query: 200 NNLSSPSLNSAVPTPACPYAPPT-----PPYVYRDTCNSSLASLRLKAKQHSS 247
+ S+ + PTPA A + P D SS+A+LRLKAK+H++
Sbjct: 492 TSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAA 544
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 105 bits (261), Expect = 5e-23
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 23 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 82
G + +D +++QRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEAR
Sbjct: 22 GNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 81
Query: 83 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS 142
V+VWF+NRRAKWRK ER G Q G +P ++ P
Sbjct: 82 VQVWFQNRRAKWRKTER---------GASDQEPGAKEPMAEVTP---------------- 116
Query: 143 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSA---VTGVPGSSLNSLNNL 199
P ++N P Q+ + S+ ++ P+ + +PG+ LN+
Sbjct: 117 ------PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYA 170
Query: 200 NNLSSPSLNSAVPTPACPYAPP-----TPPYVYRDTCNSSLASLRLKAKQHS 246
LS + P +C P P Y + +S+A+LR+KA++HS
Sbjct: 171 QALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHS 222
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 104 bits (259), Expect = 9e-23
Identities = 89/281 (31%), Positives = 128/281 (45%), Gaps = 46/281 (16%)
Query: 24 KNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 82
+ DV +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEAR
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 83 VRVWFKNRRAKWRKRE-RNQQA---ELCKNGFGPQFNGLMQPY---DDMYPGYSYNN--- 132
V+VWF NRRA+WRK+ NQ A L GF P + PY D YP + +
Sbjct: 261 VQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGG 320
Query: 133 ----------------------WAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSP-PN 169
AA +SA + SF ++ +NP + + +P N
Sbjct: 321 STVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSN 380
Query: 170 SISSMSMSSSMVPSAVTGVPGS---------SLNSLNNLNNLSSPSLNSAVPTPACPYAP 220
+S MS PSAV P + L+S +++ S +S P + P +
Sbjct: 381 GLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQ 440
Query: 221 PTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPASNLS 261
P Y T + + Q+ +G +V A N+S
Sbjct: 441 AYCPPTYSTT---GYSVDPVAGYQYGQYGQTAVDYLAKNVS 478
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 103 bits (258), Expect = 1e-22
Identities = 84/246 (34%), Positives = 116/246 (47%), Gaps = 47/246 (19%)
Query: 24 KNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 82
+ DV +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEAR
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 83 VRVWFKNRRAKWRKRE-RNQQA---ELCKNGFGPQFNGLMQPY---DDMYPGYSYNN--- 132
V+VWF NRRA+WRK+ NQ A L GF P + PY D YP + +
Sbjct: 261 VQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGG 320
Query: 133 ----------------------WAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSP-PN 169
AA +SA + SF ++ +NP + + +P N
Sbjct: 321 STVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSN 380
Query: 170 SISSMSMSSSMVPSAVTGVPGS---------SLNSLNNLNNLSSPSLNSAVPTPACP--- 217
+S MS PSAV P + L+S +++ S +S P + P
Sbjct: 381 GLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQ 440
Query: 218 -YAPPT 222
Y PPT
Sbjct: 441 AYCPPT 446
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 103 bits (258), Expect = 1e-22
Identities = 84/246 (34%), Positives = 116/246 (47%), Gaps = 47/246 (19%)
Query: 24 KNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 82
+ DV +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEAR
Sbjct: 199 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 258
Query: 83 VRVWFKNRRAKWRKRE-RNQQA---ELCKNGFGPQFNGLMQPY---DDMYPGYSYNN--- 132
V+VWF NRRA+WRK+ NQ A L GF P + PY D YP + +
Sbjct: 259 VQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGG 318
Query: 133 ----------------------WAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSP-PN 169
AA +SA + SF ++ +NP + + +P N
Sbjct: 319 STVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSN 378
Query: 170 SISSMSMSSSMVPSAVTGVPGS---------SLNSLNNLNNLSSPSLNSAVPTPACP--- 217
+S MS PSAV P + L+S +++ S +S P + P
Sbjct: 379 GLSPQVMSILGNPSAVPPQPQADFSISPLHGGLDSATSISASCSQRADSIKPGDSLPTSQ 438
Query: 218 -YAPPT 222
Y PPT
Sbjct: 439 AYCPPT 444
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 100 bits (249), Expect = 1e-21
Identities = 48/102 (47%), Positives = 70/102 (68%)
Query: 36 KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 95
K ++RR RT F++ QL+ELE FQ+ YPD+ RE++A+ T+LTEARV+VWF+NRRAKWR
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 96 KRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKG 137
KRER + + +N F ++ + P D +P + WA+ G
Sbjct: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPG 251
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 99.8 bits (247), Expect = 2e-21
Identities = 76/231 (32%), Positives = 106/231 (45%), Gaps = 37/231 (16%)
Query: 30 AEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 89
+E+ KK+ RR RT FT+ QL ELE F+++ YPD+ +REE+A NL E RV+VWF+N
Sbjct: 127 SEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQN 186
Query: 90 RRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSF- 148
RRAKWR++E+ + + + K P + P + G +L +S+
Sbjct: 187 RRAKWRRQEKLEVSSM-KLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWL 245
Query: 149 -PFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSL 207
P L S F PP + +P++ T P P L
Sbjct: 246 GPPLPGGGATALQSLPGFGPP---------AQSLPASYTPPPP------------PPPFL 284
Query: 208 NSAVPTPAC-PYAPPTPPYV------------YRDTCNSSLASLRLKAKQH 245
NS P P APP P Y D NSS+A+LRLKAK+H
Sbjct: 285 NSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/217 (33%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 199 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 258
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 259 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 316
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 317 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 371
Query: 188 VPGSSLNSLNNL--NNLSSPSLNSAVPTPACPYAPPT 222
P N +N N LS + P+ P T
Sbjct: 372 -PSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQT 407
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/217 (33%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 260 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 317
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 318 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 372
Query: 188 VPGSSLNSLNNL--NNLSSPSLNSAVPTPACPYAPPT 222
P N +N N LS + P+ P T
Sbjct: 373 -PSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQT 408
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/217 (33%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 260 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 317
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 318 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 372
Query: 188 VPGSSLNSLNNL--NNLSSPSLNSAVPTPACPYAPPT 222
P N +N N LS + P+ P T
Sbjct: 373 -PSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQT 408
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 93.2 bits (230), Expect = 2e-19
Identities = 73/217 (33%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 260 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 317
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 318 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 372
Query: 188 VPGSSLNSLNNL--NNLSSPSLNSAVPTPACPYAPPT 222
P N +N N LS + P+ P T
Sbjct: 373 -PSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQT 408
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 92.8 bits (229), Expect = 3e-19
Identities = 43/71 (60%), Positives = 57/71 (80%)
Query: 34 SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 93
S+ ++QRR RT FT+QQL+ LE TFQ+ YPD+ RE +A+ TNL EARV+VWFKNRRAK
Sbjct: 66 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK 125
Query: 94 WRKRERNQQAE 104
+RK++R+ Q E
Sbjct: 126 FRKKQRSLQKE 136
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 92.8 bits (229), Expect = 3e-19
Identities = 43/71 (60%), Positives = 57/71 (80%)
Query: 34 SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 93
S+ ++QRR RT FT+QQL+ LE TFQ+ YPD+ RE +A+ TNL EARV+VWFKNRRAK
Sbjct: 61 SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK 120
Query: 94 WRKRERNQQAE 104
+RK++R+ Q E
Sbjct: 121 FRKKQRSLQKE 131
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 92.0 bits (227), Expect = 5e-19
Identities = 70/201 (34%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 260 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 317
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 318 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 372
Query: 188 VPGSSLNSLN-NLNNLSSPSL 207
P N +N + N SP +
Sbjct: 373 -PSGPSNPMNPTIGNGLSPQV 392
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 92.0 bits (227), Expect = 5e-19
Identities = 70/201 (34%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 21 QQGKNEDVGAE-DPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLT 79
Q + D+ +E D K++QRR RT FT++QL+ELE F+R YPD+ TREE+A LT
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 80 EARVRVWFKNRRAKWRKRERNQQA----ELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAA 135
EARV+VWF NRRA+WRK+ Q L GF P + Y SY +
Sbjct: 260 EARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTY--QLSETSYQPTSI 317
Query: 136 KGLTSASLSTKSFP--------FFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTG 187
S ST P +++ NP SS + P S + S VP
Sbjct: 318 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVP----- 372
Query: 188 VPGSSLNSLN-NLNNLSSPSL 207
P N +N + N SP +
Sbjct: 373 -PSGPSNPMNPTIGNGLSPQV 392
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 91.3 bits (225), Expect = 8e-19
Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 48/259 (18%)
Query: 16 EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 75
+K QG A +++Q+R RT FT QL ELE +F + YPD+ REE+A+
Sbjct: 81 DKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALR 140
Query: 76 TNLTEARVRVWFKNRRAKWRKRERNQQ-----AELCKNGFGPQF----NGLMQPYDDMYP 126
LTE+RV+VWF+NRRAKW+KR++ L PQF D
Sbjct: 141 IGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLC 200
Query: 127 GYSYNN--WAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFS-------PPNSISSMSMS 177
+ N+ WAA + S P ++ +QS+ PPN SM +S
Sbjct: 201 SFHANDTRWAAAAMPGVS----QLPLPPALGRQQAMAQSLSQCSLAAGPPPN---SMGLS 253
Query: 178 SSMVPSAVTGV---------PGSSLNSLNNLNNLS-SPSLNSAVPTPACPYAPPTPPYVY 227
+S+ S G+ PG SL +N+S SP L S+ P V+
Sbjct: 254 NSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSS----------PDSSDVW 303
Query: 228 RDTCNSSLASLRLKAKQHS 246
R T S+ASLR KA +H+
Sbjct: 304 RGT---SIASLRRKALEHT 319
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 91.3 bits (225), Expect = 8e-19
Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 48/259 (18%)
Query: 16 EKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 75
+K QG A +++Q+R RT FT QL ELE +F + YPD+ REE+A+
Sbjct: 81 DKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALR 140
Query: 76 TNLTEARVRVWFKNRRAKWRKRERNQQ-----AELCKNGFGPQF----NGLMQPYDDMYP 126
LTE+RV+VWF+NRRAKW+KR++ L PQF D
Sbjct: 141 IGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLC 200
Query: 127 GYSYNN--WAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFS-------PPNSISSMSMS 177
+ N+ WAA + S P ++ +QS+ PPN SM +S
Sbjct: 201 SFHANDTRWAAAAMPGVS----QLPLPPALGRQQAMAQSLSQCSLAAGPPPN---SMGLS 253
Query: 178 SSMVPSAVTGV---------PGSSLNSLNNLNNLS-SPSLNSAVPTPACPYAPPTPPYVY 227
+S+ S G+ PG SL +N+S SP L S+ P V+
Sbjct: 254 NSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSS----------PDSSDVW 303
Query: 228 RDTCNSSLASLRLKAKQHS 246
R T S+ASLR KA +H+
Sbjct: 304 RGT---SIASLRRKALEHT 319
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 90.1 bits (222), Expect = 2e-18
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 22 QGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEA 81
Q N+ + +E+ KK++QRR RT F S QLQ LE F+R YPD RE++A NLTEA
Sbjct: 78 QQDNDQLNSEE-KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEA 136
Query: 82 RVRVWFKNRRAKWRKRER----NQQAELCKNGFG 111
RV+VWF+NRRAK+R+ ER N+ A L K+ G
Sbjct: 137 RVQVWFQNRRAKFRRNERAMLANKNASLLKSYSG 170
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 90.1 bits (222), Expect = 2e-18
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 22 QGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEA 81
Q N+ + +E+ KK++QRR RT F S QLQ LE F+R YPD RE++A NLTEA
Sbjct: 78 QQDNDQLNSEE-KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEA 136
Query: 82 RVRVWFKNRRAKWRKRER----NQQAELCKNGFG 111
RV+VWF+NRRAK+R+ ER N+ A L K+ G
Sbjct: 137 RVQVWFQNRRAKFRRNERAMLANKNASLLKSYSG 170
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 87.4 bits (215), Expect = 1e-17
Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 34 SKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 93
++K++QRR RT FTS QL+ELE F YPD+ TREE+A+ +LTEARV+VWF+NRRAK
Sbjct: 93 NEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAK 152
Query: 94 WRKRER--NQQAELCKNG 109
+RK+ER A KNG
Sbjct: 153 FRKQERAAAAAAAAAKNG 170
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 87.4 bits (215), Expect = 1e-17
Identities = 44/94 (46%), Positives = 58/94 (61%)
Query: 6 RKLVSACVQLEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPD 65
R+ S V + SQ D+ A K+++RR RT FT+ QL+ELE F YPD
Sbjct: 131 RQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPD 190
Query: 66 MSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 99
+ RE +AV T L E R++VWF+NRRAKWRKRE+
Sbjct: 191 VYAREMLAVKTELPEDRIQVWFQNRRAKWRKREK 224
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 87.4 bits (215), Expect = 1e-17
Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 24/189 (12%)
Query: 33 PSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 92
P+ ++QRR+RT FT QL LEA F + RYPD+ REE+A+ NL E+RV+VWFKNRRA
Sbjct: 32 PATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA 91
Query: 93 KWRKRERN----------QQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS 142
K R+++++ +++ + G + +G P P S ++ ++ S+S
Sbjct: 92 KCRQQQQSGSGTKSRPAKKKSSPVRESSGSESSGQFTP-----PAVS-SSASSSSSASSS 145
Query: 143 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSAVTGVPGSSLNSLNNLNNL 202
+ + + NP+++ S S+S+ + SS P++++ PGS+ S++ L
Sbjct: 146 SANPAAAAAAGLGGNPVAAAS------SLSTPAASSIWSPASIS--PGSAPASVSVPEPL 197
Query: 203 SSPSLNSAV 211
++PS S +
Sbjct: 198 AAPSNTSCM 206
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 87.0 bits (214), Expect = 2e-17
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 35 KKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 94
+K++QRR RT FTS QL+ELE F YPD+ TREE+A+ +LTEARV+VWF+NRRAK+
Sbjct: 86 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 145
Query: 95 RKRERNQQAE 104
RK+ER A+
Sbjct: 146 RKQERAASAK 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.124 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,236,843
Number of Sequences: 37866
Number of extensions: 514533
Number of successful extensions: 3680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 3032
Number of HSP's gapped (non-prelim): 724
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.