Guide to the Human Genome
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Name: LOC100291630 Sequence: fasta or formatted (210aa) NCBI GI: 239757693
Description:

PREDICTED: hypothetical protein XP_002345522

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           3
 C cysteine            2.4          5           1
 D aspartate           1.9          4           1
 E glutamate           1.9          4           1
 F phenylalanine       1.9          4           1
 G glycine             8.6         18           1
 H histidine           3.3          7           1
 I isoleucine          1.0          2           1
 K lysine              2.4          5           1
 L leucine             4.8         10           2
 M methionine          1.9          4           1
 N asparagine          3.3          7           1
 P proline            13.3         28           3
 Q glutamine           4.8         10           1
 R arginine           10.5         22           1
 S serine             12.4         26           2
 T threonine           8.1         17           2
 V valine              3.8          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345522 
ARHGAP17              0.053   nadrin isoform 1 
ARHGAP17              0.053   nadrin isoform 2 
LOC389333             0.041   hypothetical protein LOC389333 
LOC100130360          0.036   PREDICTED: hypothetical protein 
PCLO                  0.036   piccolo isoform 2 
PCLO                  0.036   piccolo isoform 1 
LOC643355             0.034   PREDICTED: hypothetical protein 
LOC643355             0.034   PREDICTED: hypothetical protein 
RP1L1                 0.029   retinitis pigmentosa 1-like 1 
MAP7D1                0.029   MAP7 domain containing 1 
C2orf71               0.029   hypothetical protein LOC388939 
LOC100287297          0.027   PREDICTED: hypothetical protein XP_002342926 
GLTSCR1               0.027   glioma tumor suppressor candidate region gene 1 [Ho...
INPP5E                0.027   inositol polyphosphate-5-phosphatase E 
RERE                  0.027   atrophin-1 like protein isoform b 
RERE                  0.027   atrophin-1 like protein isoform a 
RERE                  0.027   atrophin-1 like protein isoform a 
SRRM1                 0.027   serine/arginine repetitive matrix 1 
MBD6                  0.027   methyl-CpG binding domain protein 6 
SREBF1                0.024   sterol regulatory element binding transcription fact...
SREBF1                0.024   sterol regulatory element binding transcription fact...
MAP4K4                0.024   mitogen-activated protein kinase kinase kinase kinas...
C17orf76              0.024   hypothetical protein LOC388341 isoform 2 
DTX1                  0.024   deltex homolog 1 
LOC100293115          0.024   PREDICTED: hypothetical protein 
DNM1                  0.024   dynamin 1 isoform 1 
GLCCI1                0.024   glucocorticoid induced transcript 1 
BIN2                  0.024   bridging integrator 2 
LOC100290693          0.024   PREDICTED: hypothetical protein XP_002346930 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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