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Search of human proteins with 239757179
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757179 PREDICTED: hypothetical protein [Homo sapiens]
(280 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757179 PREDICTED: hypothetical protein [Homo sapiens] 579 e-166
gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo ... 579 e-166
gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo ... 579 e-166
gi|110611172 amnionless protein precursor [Homo sapiens] 37 0.015
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 37 0.025
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 33 0.36
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 33 0.36
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 33 0.36
gi|4885455 SH2B adaptor protein 3 [Homo sapiens] 32 0.47
gi|239753180 PREDICTED: hypothetical protein [Homo sapiens] 32 0.47
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ... 32 0.47
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ... 32 0.47
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 32 0.62
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 32 0.62
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 31 1.1
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 31 1.1
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 31 1.4
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] 31 1.4
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 31 1.4
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] 31 1.4
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 31 1.4
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] 31 1.4
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 1.4
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 31 1.4
gi|210147462 von Willebrand factor A domain containing 5B1 [Homo... 31 1.4
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 30 1.8
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 30 2.4
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|239755661 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
>gi|239757179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 280
Score = 579 bits (1493), Expect = e-166
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
Query: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
>gi|239751689 PREDICTED: hypothetical protein XP_002347966 [Homo
sapiens]
Length = 280
Score = 579 bits (1493), Expect = e-166
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
Query: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
>gi|239746193 PREDICTED: hypothetical protein XP_002343660 [Homo
sapiens]
Length = 280
Score = 579 bits (1493), Expect = e-166
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP
Sbjct: 1 MIACSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
Query: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL
Sbjct: 61 LTSFKKTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRL 120
Query: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG
Sbjct: 121 AGYHVLVLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLKRPGVRAAEG 180
Query: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE
Sbjct: 181 WTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPSVGE 240
Query: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL
Sbjct: 241 LDAPSVPTYCSTYRARCWGQGETQPVMPLQQGYGHSYSGL 280
>gi|110611172 amnionless protein precursor [Homo sapiens]
Length = 453
Score = 37.4 bits (85), Expect = 0.015
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 23/91 (25%)
Query: 86 GAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHV-------------------- 125
G GG+GR A A+L VA +G+A+ V T R +G HV
Sbjct: 315 GPETGGAGR-LARALLADVAENGEALGVLEATMRESGAHVWGSSAAGLAGGVAAAVLLAL 373
Query: 126 LVLLTHQPVLHQASRL--HRHIVLQPAAVPL 154
LVLL P+L +A RL RH PA PL
Sbjct: 374 LVLLVAPPLLRRAGRLRWRRHEAAAPAGAPL 404
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 36.6 bits (83), Expect = 0.025
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 19 PQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSF-KKTAPTRP 72
P + A +SG R TG R+PRG R C+ +++RG F K P P
Sbjct: 1250 PTSASAAASGYPSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNP 1304
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 32.7 bits (73), Expect = 0.36
Identities = 33/105 (31%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 21 GSGAGSSGLAHSRPTGDREPRGRR---------------PALECAVRQQRGWEMPLTSFK 65
G GS G A R G R+ R RR A A RQ MP +
Sbjct: 41 GPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHGGSGTAAHAGAARQVASGFMPHRRRR 100
Query: 66 KTAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQA 110
+TAP +P R L G GSGRGR A++ G A
Sbjct: 101 RTAPGQPWASGFRRQGRGLSGPG-AGSGRGRGGALIGRAGGGAMA 144
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 32.7 bits (73), Expect = 0.36
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 5 SSASTSTRPCGGAEPQGSGAGSSGLAHSR--PTGDREPRGRRPALECAVRQQRGW-EMPL 61
S S + RPCG A P+ +G SG R R RG PA C V RG P
Sbjct: 273 SMPSAAARPCGAALPR---SGFSGRPRGRGGAAAGRGSRGEHPA--CGVGLARGTAPQPA 327
Query: 62 TSFKKTAPTRPRPRARLCSVRRLPG----AHEGGSGRGRAAAVLHA 103
+++ A RPRA R AH+ G R R A HA
Sbjct: 328 STWALAA----RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHA 369
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 32.7 bits (73), Expect = 0.36
Identities = 36/106 (33%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 5 SSASTSTRPCGGAEPQGSGAGSSGLAHSR--PTGDREPRGRRPALECAVRQQRGW-EMPL 61
S S + RPCG A P+ +G SG R R RG PA C V RG P
Sbjct: 273 SMPSAAARPCGAALPR---SGFSGRPRGRGGAAAGRGSRGEHPA--CGVGLARGTAPQPA 327
Query: 62 TSFKKTAPTRPRPRARLCSVRRLPG----AHEGGSGRGRAAAVLHA 103
+++ A RPRA R AH+ G R R A HA
Sbjct: 328 STWALAA----RPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHA 369
>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
Length = 575
Score = 32.3 bits (72), Expect = 0.47
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 178 AEGWTPRAPGLGALSTPTSRFQELLASPRRARACSLCHRRRNFLRASYLCRNTGFRRKPS 237
AE PG A P +R E LA PR CS H RR+ LR + R+ G P+
Sbjct: 100 AEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRS-LRHIFRRRSAG--ELPA 156
Query: 238 VGELDAPSVPTYCSTYRAR 256
AP P + AR
Sbjct: 157 AHTAAAPGTPGEAAETPAR 175
>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 2 IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
+AC + S P+ SG G RPT R P GR P C+ G
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
P +S ++ + P+RPR + L R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90
>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
Length = 130
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 2 IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
+AC + S P+ SG G RPT R P GR P C+ G
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
P +S ++ + P+RPR + L R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90
>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
sapiens]
Length = 130
Score = 32.3 bits (72), Expect = 0.47
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 2 IACSSASTSTRPCGGAEPQGSGA---GSSGLAHSRPTGDREPRGRRPALECA-VRQQRGW 57
+AC + S P+ SG G RPT R P GR P C+ G
Sbjct: 1 MACQTTSGRMEHISPQRPRNSGGRPPGPCSQRSGRPTPGRSPPGRLPGWVCSDTHISPGT 60
Query: 58 EMPLTSFKKTA---PTRPRPRARLCSVRRL 84
P +S ++ + P+RPR + L R L
Sbjct: 61 CFPASSPRERSLPVPSRPRQKHHLAGSRSL 90
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 32.0 bits (71), Expect = 0.62
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 13 PCGGAEPQ-GSGAGSS-GLAHSRPTGDREPRGRRPA-LECAVRQQRGWEMPLTSFKKTAP 69
P GG P G+GAG G A RP EPR + + A + G LTS + P
Sbjct: 32 PRGGESPDPGAGAGDRRGGARQRPQRLSEPRQPQAVPVPGAASYRLGLPPTLTSLSSSVP 91
Query: 70 TRPRPRARLCSVRRLPG 86
R P ARL + R PG
Sbjct: 92 GRASPAARLRN--RRPG 106
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 32.0 bits (71), Expect = 0.62
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 7 ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP 60
A T+ G + QG G G G + G + +GRRP L AV + W P
Sbjct: 171 AEAQTQAEGQGQGQGQGQGQ-GQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSP 223
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 16 GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
G P+G+ A + L P +G R+ R QR PL A
Sbjct: 109 GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 168
Query: 69 PTRPRPRARLCSVRRLPGAHEGG 91
P RP ARL S R PGA G
Sbjct: 169 PRRPAAAARLGSAARSPGAPPAG 191
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 16 GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
G P+G+ A + L P +G R+ R QR PL A
Sbjct: 62 GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 121
Query: 69 PTRPRPRARLCSVRRLPGAHEGG 91
P RP ARL S R PGA G
Sbjct: 122 PRRPAAAARLGSAARSPGAPPAG 144
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 16 GAEPQGSGAGSSGLAHSRP-------TGDREPRGRRPALECAVRQQRGWEMPLTSFKKTA 68
G P+G+ A + L P +G R+ R QR PL A
Sbjct: 62 GVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPA 121
Query: 69 PTRPRPRARLCSVRRLPGAHEGG 91
P RP ARL S R PGA G
Sbjct: 122 PRRPAAAARLGSAARSPGAPPAG 144
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
T P GA+P GSG GDR G RP L AV+++ G FK + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73
Query: 71 RPRPRARL---CSVRRLP 85
R+RL C RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91
>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
+ D PR RPAL Q GW LT F P PR +LC G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70
Query: 91 GSGRG 95
G GRG
Sbjct: 71 GDGRG 75
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
T P GA+P GSG GDR G RP L AV+++ G FK + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73
Query: 71 RPRPRARL---CSVRRLP 85
R+RL C RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91
>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
+ D PR RPAL Q GW LT F P PR +LC G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70
Query: 91 GSGRG 95
G GRG
Sbjct: 71 GDGRG 75
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 11 TRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPT 70
T P GA+P GSG GDR G RP L AV+++ G FK + T
Sbjct: 33 TEPGFGAQP-GSG------------GDRVCPGGRPRLLMAVKRRSG------GFKSHSAT 73
Query: 71 RPRPRARL---CSVRRLP 85
R+RL C RRLP
Sbjct: 74 ERVERSRLARACYARRLP 91
>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 30.8 bits (68), Expect = 1.4
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 35 TGDREPRGRRPALECAVRQQRGWEMPLT----SFKKTAPTRPRPRARLCSVRRLPGAHEG 90
+ D PR RPAL Q GW LT F P PR +LC G
Sbjct: 21 SADPRPRWTRPALSFPWPQDVGWAASLTRRPVRFCARLPPGASPRWQLC----------G 70
Query: 91 GSGRG 95
G GRG
Sbjct: 71 GDGRG 75
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 30.8 bits (68), Expect = 1.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 7 ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKK 66
++ STRP P SG + A + PT P G + + ++ G P +S +K
Sbjct: 497 STRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAG---PKSSPRK 553
Query: 67 TAPTRPRPRAR 77
P RP AR
Sbjct: 554 PVPLRPGKAAR 564
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapiens]
Length = 1205
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 67 TAPTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQAVHVHCLTQRLAGYHVL 126
T P R R + L V L G + G ++L G + + + GY
Sbjct: 1031 TPPKRSRGKPALSRVPFLEGVNGDSDYNGSGRSLLLPFEDRGDLEPLELVWAKCRGYPSY 1090
Query: 127 VLLTHQPVLHQASRLHRHIVLQPAAVPLLKVLVVAEQDQ 165
L P + + LH + P VP L VL + EQ Q
Sbjct: 1091 PALIIDPKMPREGLLHNGV---PIPVPPLDVLKLGEQKQ 1126
>gi|210147462 von Willebrand factor A domain containing 5B1 [Homo
sapiens]
Length = 1215
Score = 30.8 bits (68), Expect = 1.4
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 16 GAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMPLTSFKKTAPTRPRPR 75
G E Q + SR GD EP A E W+ P S ++ +P+RP
Sbjct: 748 GQETQAWSPVRERTSDSRSPGDLEPSHHPSAFETETSSD--WDPPAESQERASPSRPATP 805
Query: 76 ARLCSVRRLPGAHE 89
A + + G H+
Sbjct: 806 APVLGKALVKGLHD 819
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 30.4 bits (67), Expect = 1.8
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 7 ASTSTRPCGGAEPQGSGAGSSGLAHSRPTGDREPRGRRPALECAVRQQRGWEMP--LTSF 64
A T G G G + +R +G +PRG +P AVR +RG +P +
Sbjct: 120 ARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQP--RAAVRPRRGGALPRGTGAV 177
Query: 65 KKTAPTRPRPRARLCS-----VRRLPGAHEGGSGRG 95
+ P R R CS RL G G S RG
Sbjct: 178 PERGPGTEPQRGRRCSDLQGLGGRLRGCPAGPSARG 213
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 30.0 bits (66), Expect = 2.4
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 15 GGAEPQGSGA-GSSGLAHSRPTGDREPRGRRPALECAVR-QQRGWEMPLTSFKKT----A 68
GG + G GA G +G+ + PR RRP +V + R P T ++T +
Sbjct: 17 GGCQISGRGARGCNGIPGAAAWEAALPR-RRPRRHPSVNPRSRAAGSPRTRGRRTEERPS 75
Query: 69 PTRPRPRARLCSVRRLPGAHEGGSGRGRAAAVLHAVAGHGQ 109
+R R R R LPG GG GRGRA V G G+
Sbjct: 76 GSRLGDRGR---GRALPGGRLGGRGRGRAP---ERVGGRGR 110
>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 4 CSSASTSTRPCGGAEPQGSGAGSSGLAHSRPTG 36
C + S C G+E G+G G SG PTG
Sbjct: 33 CQRGAASANHCSGSEGAGTGQGLSGFCAWLPTG 65
>gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 30.0 bits (66), Expect = 2.4
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 89 EGGSGRGRAAAVLHAVAGHGQAVHVH----CLTQRLAGYHVLVLLTHQPVLHQ-----AS 139
E RG+A A L AV G +A VH + LA + L+L Q + A
Sbjct: 19 ESLKARGQALAQLVAVGGQMRAQRVHMGARAVAHLLAQWAQLLLQLVQLLARALLELCAQ 78
Query: 140 RLHRHIVLQPAAVPLLKVLVVAEQDQGLHLLK 171
RLH V +PLL +V GLHLL+
Sbjct: 79 RLHLLAVELHLLLPLLLEVVQVGLHLGLHLLQ 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,430,642
Number of Sequences: 37866
Number of extensions: 747050
Number of successful extensions: 2765
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 109
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.