Guide to the Human Genome
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Name: LOC100292717 Sequence: fasta or formatted (243aa) NCBI GI: 239756966
Description:

PREDICTED: similar to arg tyrosine kinase

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         30           3
 C cysteine            3.3          8           1
 D aspartate           4.5         11           1
 E glutamate           4.9         12           2
 F phenylalanine       2.5          6           1
 G glycine             4.5         11           1
 H histidine           2.9          7           1
 I isoleucine          0.8          2           1
 K lysine              3.3          8           1
 L leucine            10.7         26           2
 M methionine          2.1          5           1
 N asparagine          1.6          4           2
 P proline            11.5         28           1
 Q glutamine           4.1         10           1
 R arginine            7.4         18           1
 S serine              7.0         17           1
 T threonine           5.8         14           2
 V valine              7.8         19           1
 W tryptophan          1.6          4           2
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to arg tyrosine kinase 
AATK                  0.392   apoptosis-associated tyrosine kinase 
LMTK3                 0.233   lemur tyrosine kinase 3 
LMTK2                 0.201   lemur tyrosine kinase 2 
PTK7                  0.109   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.109   PTK7 protein tyrosine kinase 7 isoform d precursor [...
PTK7                  0.109   PTK7 protein tyrosine kinase 7 isoform c precursor [...
PTK7                  0.109   PTK7 protein tyrosine kinase 7 isoform b precursor [...
ABL2                  0.103   arg tyrosine kinase isoform c 
ABL2                  0.103   arg tyrosine kinase isoform b 
ABL2                  0.103   arg tyrosine kinase isoform e 
ABL2                  0.103   arg tyrosine kinase isoform d 
ABL2                  0.103   arg tyrosine kinase isoform a 
ABL1                  0.099   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.099   c-abl oncogene 1, receptor tyrosine kinase isoform b...
INSR                  0.099   insulin receptor isoform Short precursor 
INSR                  0.099   insulin receptor isoform Long precursor 
INSRR                 0.094   insulin receptor-related receptor precursor 
IGF1R                 0.094   insulin-like growth factor 1 receptor precursor [Homo...
DDR2                  0.090   discoidin domain receptor family, member 2 precursor...
DDR2                  0.090   discoidin domain receptor family, member 2 precursor...
ALK                   0.084   anaplastic lymphoma kinase 
NTRK1                 0.082   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.082   neurotrophic tyrosine kinase, receptor, type 1 isofor...
NTRK1                 0.082   neurotrophic tyrosine kinase, receptor, type 1 isofo...
LTK                   0.082   leukocyte receptor tyrosine kinase isoform 3 precur...
LTK                   0.082   leukocyte receptor tyrosine kinase isoform 1 precurs...
LTK                   0.082   leukocyte receptor tyrosine kinase isoform 2 precurs...
RYK                   0.080   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.080   RYK receptor-like tyrosine kinase isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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