Search of human proteins with 239756681

Search of human proteins with 239756681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756681 PREDICTED: basic helix-loop-helix family, member
a9 [Homo sapiens]
         (203 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756681 PREDICTED: basic helix-loop-helix family, member a9...   423   e-119
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...   407   e-114
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...   407   e-114
gi|148922889 scleraxis homolog B [Homo sapiens]                        67   1e-11
gi|186972126 scleraxis homolog A [Homo sapiens]                        67   1e-11
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    63   2e-10
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph...    60   2e-09
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph...    60   2e-09
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa...    60   2e-09
gi|23097242 nephew of atonal 3 [Homo sapiens]                          58   5e-09
gi|98986461 neurogenic differentiation 2 [Homo sapiens]                58   6e-09
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]                56   2e-08
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]         56   2e-08
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi...    55   3e-08
gi|38455396 neurogenin 1 [Homo sapiens]                                54   1e-07
gi|4885075 atonal homolog 1 [Homo sapiens]                             52   3e-07
gi|153792190 neurogenic differentiation 4 [Homo sapiens]               52   3e-07
gi|121114306 neurogenic differentiation 1 [Homo sapiens]               51   8e-07
gi|23111009 myogenic differentiation 1 [Homo sapiens]                  50   1e-06
gi|22748877 basic helix-loop-helix domain containing, class B, 5...    50   1e-06
gi|68989258 neurogenin 3 [Homo sapiens]                                49   2e-06
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...    48   7e-06
gi|27475985 neurogenic differentiation 6 [Homo sapiens]                47   1e-05
gi|21553337 atonal homolog 7 [Homo sapiens]                            47   1e-05
gi|31077092 neurogenin 2 [Homo sapiens]                                47   1e-05
gi|57529222 basic helix-loop-helix domain containing, class B, 4...    46   2e-05
gi|4507741 twist [Homo sapiens]                                        45   3e-05
gi|4507399 transcription factor 4 isoform b [Homo sapiens]             45   6e-05
gi|145312267 transcription factor 4 isoform a [Homo sapiens]           45   6e-05
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi...    45   6e-05

>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 203

 Score =  423 bits (1088), Expect = e-119
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60
           MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
Sbjct: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60

Query: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120
           VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
Sbjct: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120

Query: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180
           LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 181 PHGPPPWPRGYLRSAPGMGHPRS 203
           PHGPPPWPRGYLRSAPGMGHPRS
Sbjct: 181 PHGPPPWPRGYLRSAPGMGHPRS 203


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score =  407 bits (1045), Expect = e-114
 Identities = 203/235 (86%), Positives = 203/235 (86%), Gaps = 32/235 (13%)

Query: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60
           MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
Sbjct: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60

Query: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120
           VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
Sbjct: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120

Query: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180
           LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 181 PH--------------------------------GPPPWPRGYLRSAPGMGHPRS 203
           PH                                GPPPWPRGYLRSAPGMGHPRS
Sbjct: 181 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS 235


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score =  407 bits (1045), Expect = e-114
 Identities = 203/235 (86%), Positives = 203/235 (86%), Gaps = 32/235 (13%)

Query: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60
           MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
Sbjct: 1   MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP 60

Query: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120
           VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
Sbjct: 61  VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV 120

Query: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180
           LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 181 PH--------------------------------GPPPWPRGYLRSAPGMGHPRS 203
           PH                                GPPPWPRGYLRSAPGMGHPRS
Sbjct: 181 PHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS 235


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 20  AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72
           +ED        G D      + A C    A   AG RRA       RP R   +R  AN 
Sbjct: 23  SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82

Query: 73  RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132
           RER R    N AF ALR  +  +   ++LSKI TLR A   I+ L  VL A  A    CG
Sbjct: 83  RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138

Query: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168
             + CH   A       G+ PPPP  P     +  +P
Sbjct: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 54/157 (34%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 20  AEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRA-------RPVRSKARRMAANV 72
           +ED        G D      + A C    A   AG RRA       RP R   +R  AN 
Sbjct: 23  SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82

Query: 73  RERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCG 132
           RER R    N AF ALR  +  +   ++LSKI TLR A   I+ L  VL A  A    CG
Sbjct: 83  RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGEA----CG 138

Query: 133 HLE-CHGPAARGDTGDTGASPPPPAGPSLARPDAARP 168
             + CH   A       G+ PPPP  P     +  +P
Sbjct: 139 DGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQP 175


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 69/192 (35%), Positives = 85/192 (44%), Gaps = 30/192 (15%)

Query: 4   GAPGLGLTARKGAEDSAEDLGGPCP-----EPGGDSGVLGANGASCSRGEAEEPAGRRRA 58
           GAP  G     G+  S   L  PC       PG  + + G +GA+         A  RR 
Sbjct: 105 GAPPGGFPYSPGSPPSC--LAYPCAGAAVLSPG--ARLRGLSGAAA--------AAARRR 152

Query: 59  RPVRSKAR----RMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRI 114
           R VRS+A     R AANVRER+R+   N+AF  LR  +      KRLSK+ TLR AI  I
Sbjct: 153 RRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYI 212

Query: 115 AALSLVLRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAP 174
             LS +++A    RG  G   C GP   G  G  G SP   A   +      R   PS  
Sbjct: 213 NFLSELVQADLPLRGG-GAGGCGGPGGGGRLG--GDSPGSQAQKVIICHRGTRSPSPSD- 268

Query: 175 RCASCPPHGPPP 186
                P +G PP
Sbjct: 269 -----PDYGLPP 275


>gi|239752994 PREDICTED: achaete-scute complex homolog 5
           (Drosophila) [Homo sapiens]
          Length = 313

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 71  NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
           N RER+R+   NE +  LR  L   L  KRLSK+ TLR AI  I  L  +L ++P    P
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255

Query: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA--PRCASCPPHGPPPW 187
                   PA+RG  G TG  P PPA P   RP       PS+  P  +      P P+
Sbjct: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPF 305


>gi|239747548 PREDICTED: achaete-scute complex homolog 5
           (Drosophila) [Homo sapiens]
          Length = 313

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 71  NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
           N RER+R+   NE +  LR  L   L  KRLSK+ TLR AI  I  L  +L ++P    P
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255

Query: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA--PRCASCPPHGPPPW 187
                   PA+RG  G TG  P PPA P   RP       PS+  P  +      P P+
Sbjct: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPF 305


>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
           sapiens]
          Length = 313

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 71  NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
           N RER+R+   NE +  LR  L   L  KRLSK+ TLR AI  I  L  +L ++P    P
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255

Query: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA--PRCASCPPHGPPPW 187
                   PA+RG  G TG  P PPA P   RP       PS+  P  +      P P+
Sbjct: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPF 305


>gi|23097242 nephew of atonal 3 [Homo sapiens]
          Length = 166

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 4   GAPGLGLTARKGAEDSAEDLGGP----CPEPGGDSGVLGANGASCSRGEAEEPAGRRRAR 59
           G P L L   +    +  + G P    C    GD    G       RG      GR + +
Sbjct: 40  GDPALALREGRPRRMARFEEGDPEEEECEVDQGD----GEEEEEEERGRGVSLLGRPKRK 95

Query: 60  PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSL 119
            V + A+R AAN+RERKR+ + NEAF+ LRR +      KRLS+I TLR AI  I+ ++ 
Sbjct: 96  RVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTE 155

Query: 120 VLRA 123
           +L +
Sbjct: 156 LLES 159


>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
          Length = 382

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 2   LRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRR--RAR 59
           LRG  G   T  +  E+   +LGG   E   +    G + A   R +   P  R+  +AR
Sbjct: 60  LRGEEGTEATLAEVKEEG--ELGGEEEEEEEEEE--GLDEAEGERPKKRGPKKRKMTKAR 115

Query: 60  PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSL 119
             RSK RR  AN RER R+ D N A + LR+ +      ++LSKI TLR A + I ALS 
Sbjct: 116 LERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 175

Query: 120 VLRASPAP 127
           +LR+   P
Sbjct: 176 ILRSGKRP 183



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 13/30 (43%)

Query: 142 RGDTGDTGASPPPPAGPSLARPDAARPSVP 171
           R D GD    PPP  GP    P  A   VP
Sbjct: 30  RSDKGDAPPPPPPAPGPGAPGPARAAKPVP 59


>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
          Length = 397

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 55/151 (36%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 19  SAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGR-RRARPVRSKARRMAANVRERKR 77
           S+ D  G CP  G   G+      SCS   AE  A   RRAR   +  +R +A+ RE+ R
Sbjct: 35  SSSDSSGSCPCDGA-RGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLR 93

Query: 78  ILDYNEAFNALRRALRHDL--GGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCGHLE 135
           +     A + LRR L   L   G+ L+KI TLR AI  I  LS VL  S         L+
Sbjct: 94  MRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEE------SLQ 147

Query: 136 CHGPAARGDTGDTGASP-PPPAGPSLARPDA 165
           C     RGD G     P  P  GP+ A+  A
Sbjct: 148 CR-RRQRGDAGSPWGCPLCPDRGPAEAQTQA 177


>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
          Length = 193

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 51/145 (35%), Positives = 61/145 (42%), Gaps = 21/145 (14%)

Query: 56  RRARPVRSKARRMAA-----NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRA 110
           RR RP  ++    AA     N RER R+   N  F ALR+ + H    K+LSK+ TLR A
Sbjct: 36  RRRRPATAETGGGAAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSA 95

Query: 111 IHRIAALSLVLRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSV 170
           +  I AL  +L    A R           A  G        P  P GP    P AA PS 
Sbjct: 96  VEYIRALQRLLAEHDAVRN----------ALAGGLRPQAVRPSAPRGPPGTTPVAASPS- 144

Query: 171 PSAPRCASCPPHGPPPWPRGYLRSA 195
               R +S P  G    P G  RSA
Sbjct: 145 ----RASSSPGRGGSSEP-GSPRSA 164


>gi|29126247 basic helix-loop-helix family, member a15 [Homo
           sapiens]
          Length = 189

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 55/168 (32%), Positives = 69/168 (41%), Gaps = 24/168 (14%)

Query: 3   RGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEE-------PAGR 55
           R AP     A  G       L  P PEP        A  A+ + GE          P GR
Sbjct: 10  RRAPVQDTEATPGEGTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGR 69

Query: 56  RRARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIA 115
           R +    S  RR+ +N RER+R+   N AF ALR  + H    K+LSKI TL  A + I 
Sbjct: 70  RDS----SIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIK 125

Query: 116 ALSLVLRASPAPRGPCGHLECHGP-----------AARGDTGDTGASP 152
           +L+  +    + R P   LE  GP            A G  G T A P
Sbjct: 126 SLTATILTMSSSRLP--GLEGPGPKLYQHYQQQQQVAGGALGATEAQP 171


>gi|38455396 neurogenin 1 [Homo sapiens]
          Length = 237

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 53/189 (28%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 17  EDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPVRSKA--------RRM 68
           + +A   G P P   G   +  A+    ++ + +E   RR    VRS+A        RR+
Sbjct: 36  QQAASASGPPAPARRGAPNISRASEVPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRV 95

Query: 69  AANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRAS---- 124
            AN RER R+ + N A +ALR  L       +L+KI TLR A + I AL+  LR +    
Sbjct: 96  KANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGL 155

Query: 125 ------------------PAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAA 166
                             P P  P    E  G  A   +  +  S P  +     RP   
Sbjct: 156 PGGGARERLLPPQCVPCLPGPPSPASDAESWGSGAAAASPLSDPSSPAASEDFTYRPGDP 215

Query: 167 RPSVPSAPR 175
             S PS P+
Sbjct: 216 VFSFPSLPK 224


>gi|4885075 atonal homolog 1 [Homo sapiens]
          Length = 354

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 43/124 (34%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 64  KARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRA 123
           K RR+AAN RER+R+   N AF+ LR  +      K+LSK  TL+ A   I ALS +L+ 
Sbjct: 158 KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQT 217

Query: 124 ------SPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCA 177
                  P P   C     H   A    G  GA     AG   A   + RP+ P + R  
Sbjct: 218 PSGGEQPPPPPASCKSDHHHLRTAASYEG--GAGNATAAGAQQASGGSQRPTPPGSCRTR 275

Query: 178 SCPP 181
              P
Sbjct: 276 FSAP 279


>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
          Length = 331

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 33/73 (45%), Positives = 43/73 (58%)

Query: 57  RARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
           +AR  R +ARR+ AN RER R+   N+A + LRR +      ++LSKI TLR A + I A
Sbjct: 79  KARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWA 138

Query: 117 LSLVLRASPAPRG 129
           LS VL     P G
Sbjct: 139 LSEVLETGQTPEG 151


>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
          Length = 356

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query: 57  RARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
           +AR  R K RRM AN RER R+   N A + LR+ +      ++LSKI TLR A + I A
Sbjct: 93  KARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWA 152

Query: 117 LSLVLRASPAP 127
           LS +LR+  +P
Sbjct: 153 LSEILRSGKSP 163


>gi|23111009 myogenic differentiation 1 [Homo sapiens]
          Length = 320

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 59  RPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALS 118
           R   +  RR AA +RER+R+   NEAF  L+R    +   +RL K+  LR AI  I  L 
Sbjct: 103 RKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSN-PNQRLPKVEILRNAIRYIEGLQ 161

Query: 119 LVLR-ASPAPRGPCGHLECHGPAARGD-----TGDTGASPP 153
            +LR    AP G        GP   G      +GD+ AS P
Sbjct: 162 ALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASSP 202


>gi|22748877 basic helix-loop-helix domain containing, class B, 5
           [Homo sapiens]
          Length = 381

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 3   RGAPGLGLTARKGAE--DSAEDLGGPCPEPGG---------DSGVLGANGASCS-RGEAE 50
           R +PG G    K AE   +A   GG    PGG          SG  G  G S S  G + 
Sbjct: 168 RASPGAGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSS 227

Query: 51  EPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALRRAL--RHDLGGKRLSKIATL 107
             +     +    KA R+  N RER+R+ D N+A + LR  +   H    ++LSKIATL
Sbjct: 228 SSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATL 286


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 60/189 (31%), Positives = 79/189 (41%), Gaps = 29/189 (15%)

Query: 10  LTARKGAEDSAEDLGGPCPEP--GGDSGV---LGANGASCSRGEAEEPAGRRRARPVRSK 64
           +T    A  S     G C E   GG  G    L A     SR ++E    ++R      +
Sbjct: 29  VTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQR------R 82

Query: 65  ARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRAS 124
           +RR  AN RER R+ + N A +ALR  L       +L+KI TLR A + I AL+  LR +
Sbjct: 83  SRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIA 142

Query: 125 ---------PAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAA---RPSVPS 172
                    PAP   CG L   G    G  GD G+   P +      P A+   RP +  
Sbjct: 143 DHSLYALEPPAPH--CGELGSPG----GSPGDWGSLYSPVSQAGSLSPAASLEERPGLLG 196

Query: 173 APRCASCPP 181
           A   A   P
Sbjct: 197 ATFSACLSP 205


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 41/109 (37%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 52  PAGRRRAR------PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA 105
           P G RRA       PV    +R AAN RER R    N AF ALR  +  +   ++LSKI 
Sbjct: 53  PGGGRRAGGGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIE 112

Query: 106 TLRRAIHRIAALS--LVLRASPAPRGPCGHLECHGPAARGDTGDTGASP 152
           TLR A   IA L+  L+L  S     PC         A     D G  P
Sbjct: 113 TLRLASSYIAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADGGRQP 161


>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
          Length = 337

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 40  NGASCSRGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGK 99
           NG    RG  ++   + R    R K RR  AN RER R+   N+A + LR+ +      +
Sbjct: 71  NGLPRRRGLRKKKTTKLRLE--RVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQ 128

Query: 100 RLSKIATLRRAIHRIAALSLVLRASPAP 127
           +LSKI TLR A + I ALS +LR    P
Sbjct: 129 KLSKIETLRLAKNYIWALSEILRIGKRP 156


>gi|21553337 atonal homolog 7 [Homo sapiens]
          Length = 152

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 26/56 (46%), Positives = 36/56 (64%)

Query: 66  RRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVL 121
           RR+AAN RER+R+   N AF+ LRR +      K+LSK  TL+ A+  I AL+ +L
Sbjct: 41  RRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRIL 96


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 63/216 (29%), Positives = 84/216 (38%), Gaps = 21/216 (9%)

Query: 4   GAPGLGLTARKGAEDSAEDLGGPCPEPGG--DSGVLGANGASCSRGEAEEPAGRRRARPV 61
           GA G G   ++GAE      GG      G   + +LG     C R  +   A  R A+  
Sbjct: 46  GASG-GARRQRGAEAGQGARGGVAAGAEGCRPARLLGLVH-DCKRRPSRARAVSRGAKTA 103

Query: 62  RS-----KARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
            +     K RR+ AN RER R+ + N A +ALR  L       +L+KI TLR A + I A
Sbjct: 104 ETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWA 163

Query: 117 LSLVLRASPAPRGPCGHLE---------CHGPAARGDTGDTGASPPPPAGPSLARPDAAR 167
           L+  LR +    G  G L               A      +G SP P +  S     A  
Sbjct: 164 LTETLRLADHCGGGGGGLPGALFSEAVLLSPGGASAALSSSGDSPSPASTWSCTNSPAPS 223

Query: 168 PSVPS---APRCASCPPHGPPPWPRGYLRSAPGMGH 200
            SV S   +P   +  P  P      Y +  P   H
Sbjct: 224 SSVSSNSTSPYSCTLSPASPAGSDMDYWQPPPPDKH 259


>gi|57529222 basic helix-loop-helix domain containing, class B, 4
           [Homo sapiens]
          Length = 225

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 46  RGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALRRAL--RHDLGGKRLSK 103
           RG      GRRR R  RS   R++ N RER+R+ D N+A + LR  +   H    ++LSK
Sbjct: 83  RGPGSAADGRRRPREQRSL--RLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSK 140

Query: 104 IATLRRAIHRIAALSLVLRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARP 163
           IATL      + A + +L  + A       L       +G      A+P  P G +   P
Sbjct: 141 IATL------LLAKNYILMQAQA-LDEMRRLVAFLNQGQGLAAPVNAAPLTPFGQATVCP 193

Query: 164 DAARPSV-PSAPRCAS 178
            +A  ++ P   +CA+
Sbjct: 194 FSAGAALGPCPDKCAA 209


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 31  GGDSGVLGANGASCSRGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALRR 90
           GG  G  G  G+S   G  +             + +R+ ANVRER+R    NEAF ALR+
Sbjct: 82  GGGGGAGGGGGSSSGGGSPQSYE--------ELQTQRVMANVRERQRTQSLNEAFAALRK 133

Query: 91  ALRHDLGGKRLSKIATLRRAIHRIAALSLVLRA 123
            +   L   +LSKI TL+ A   I  L  VL++
Sbjct: 134 II-PTLPSDKLSKIQTLKLAARYIDFLYQVLQS 165


>gi|4507399 transcription factor 4 isoform b [Homo sapiens]
          Length = 667

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 62  RSKARRMAANVRERKRILDYNEAFNALRRALR-HDLGGKRLSKIATLRRAIHRIAALSLV 120
           R K RRMA N RER R+ D NEAF  L R ++ H    K  +K+  L +A+  I +L   
Sbjct: 561 REKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQ 620

Query: 121 LR-ASPAPRGPCGHLECHGPAARGDTGDTGASPPP--PAGPSLARPDAA 166
           +R  +  P+  C          R +     + PPP   AGP     DA+
Sbjct: 621 VRERNLNPKAAC--------LKRREEEKVSSEPPPLSLAGPHPGMGDAS 661


>gi|145312267 transcription factor 4 isoform a [Homo sapiens]
          Length = 671

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 62  RSKARRMAANVRERKRILDYNEAFNALRRALR-HDLGGKRLSKIATLRRAIHRIAALSLV 120
           R K RRMA N RER R+ D NEAF  L R ++ H    K  +K+  L +A+  I +L   
Sbjct: 565 REKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQ 624

Query: 121 LR-ASPAPRGPCGHLECHGPAARGDTGDTGASPPP--PAGPSLARPDAA 166
           +R  +  P+  C          R +     + PPP   AGP     DA+
Sbjct: 625 VRERNLNPKAAC--------LKRREEEKVSSEPPPLSLAGPHPGMGDAS 665


>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
           sapiens]
          Length = 280

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 43/118 (36%), Positives = 52/118 (44%), Gaps = 14/118 (11%)

Query: 65  ARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLR-- 122
           ARR+  N RER R  + N AF  LR+ L      ++LSK   LR A+  I  L  +LR  
Sbjct: 150 ARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQ 209

Query: 123 -----ASPAPRGPCG---HLECHGPAARGDTGDTGAS----PPPPAGPSLARPDAARP 168
                A P P GP     H      A RG      A+    P PPA P  +   AARP
Sbjct: 210 AAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPDGSPGGAARP 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,887,585
Number of Sequences: 37866
Number of extensions: 804485
Number of successful extensions: 11179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 836
Number of HSP's that attempted gapping in prelim test: 7027
Number of HSP's gapped (non-prelim): 4187
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.