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Search of human proteins with 239756535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756535 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|239751051 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo ... 196 3e-51
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.010
gi|24430197 interleukin 17 receptor C isoform 1 precursor [Homo ... 34 0.028
gi|90669934 interleukin 17 receptor C isoform 3 precursor [Homo ... 34 0.028
gi|24430195 interleukin 17 receptor C isoform 2 precursor [Homo ... 34 0.028
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 33 0.048
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 33 0.063
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.082
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.082
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 32 0.082
gi|194363768 homeobox D9 [Homo sapiens] 32 0.082
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 32 0.082
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 32 0.082
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 32 0.082
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 0.082
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 0.082
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 0.082
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 32 0.082
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 32 0.082
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 32 0.082
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.11
gi|91208420 bassoon protein [Homo sapiens] 32 0.11
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens] 32 0.11
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens] 32 0.11
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 32 0.14
gi|64084766 fidgetin [Homo sapiens] 31 0.18
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens] 31 0.18
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 31 0.18
>gi|239756535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 196 bits (498), Expect = 3e-51
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
>gi|239751051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 196 bits (498), Expect = 3e-51
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
>gi|239745492 PREDICTED: hypothetical protein XP_002343473 [Homo
sapiens]
Length = 90
Score = 196 bits (498), Expect = 3e-51
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR
Sbjct: 1 MRAERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHR 60
Query: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
RSHLRGEEAGERRMDRTQAREVRPETGSLP
Sbjct: 61 RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 32 DPGNPGEGRGVGPGHGPGGPRPPALRSHRRS-HLRGEEAGERRMDRTQAREVRPE 85
DP +G+ GPG G PR PAL S R+ H A +R + + +EV+ E
Sbjct: 2046 DPRKKKKGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRSKAKAKGKEVKKE 2100
>gi|24430197 interleukin 17 receptor C isoform 1 precursor [Homo
sapiens]
Length = 791
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 33 PGNPGEGRGVGPGHGPG 49
PG P GRGVGPG GPG
Sbjct: 770 PGTPAPGRGVGPGAGPG 786
>gi|90669934 interleukin 17 receptor C isoform 3 precursor [Homo
sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 33 PGNPGEGRGVGPGHGPG 49
PG P GRGVGPG GPG
Sbjct: 684 PGTPAPGRGVGPGAGPG 700
>gi|24430195 interleukin 17 receptor C isoform 2 precursor [Homo
sapiens]
Length = 720
Score = 33.9 bits (76), Expect = 0.028
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 33 PGNPGEGRGVGPGHGPG 49
PG P GRGVGPG GPG
Sbjct: 699 PGTPAPGRGVGPGAGPG 715
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 39 GRGVGPGHGPGGPRPPALRSHR----RSHLRGEEAGERRMDRTQAREVRPETGSLP 90
GRG+GPG G RPPA RS R S R A R ++ P + P
Sbjct: 1213 GRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARP 1268
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 32.7 bits (73), Expect = 0.063
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 18 WSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGE 67
W G+S+ PG P E RG G G G GP +S R S L GE
Sbjct: 1235 WHDGPGTSEHREMEAPGGPSEDRG-GKGRGGPGPAQRVPKSGRSSSLDGE 1283
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 31 VDPGNPGEGRGVGPGHGPGGPR----PPALRSHRRSHLRGEEAGERR 73
+ P NPG+G G G G P P + R H +S G E G R
Sbjct: 943 IPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQS--GGPEHGPER 987
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 13 RCSPSWSGTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGE 71
R P +G G F G P +PG PG +GP PG P P + +AGE
Sbjct: 209 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG---KPGKAGE 265
Query: 72 RRMDRTQAREVRPETGSLP 90
R Q P T LP
Sbjct: 266 RGPPGPQGARGFPGTPGLP 284
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 2 RAER--PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSH 59
R ER PG+R SP G G G P PG G GP PG PP L+
Sbjct: 698 RGERGFPGERG----SPGAQGLQGPR--GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 751
Query: 60 RRSHLRGEEAGERRMDRTQAREVRPE 85
AG + DR E PE
Sbjct: 752 PGERGAAGIAGPKG-DRGDVGEKGPE 776
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRG---EEAG 70
G P PGNPG P PG P PP L + + + G E+AG
Sbjct: 153 GEPGTPGNPG------PPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 192
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 20 GTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G G S F G P PG PGEG G PG P L
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 694
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 19 SGTSGSSDFGFPVDPGNP----GEGRGVGPGHGPGGPRPP 54
SG G++ P+ P P GE GP PG P PP
Sbjct: 1172 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1211
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 16 PSWSGTSGSSDF----GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P G G F G P PG G+ GP GP GPR P
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA-GPSGPRGP 1165
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
PG+R R P+ + + +D G P G PG VGP GPG P P +
Sbjct: 329 PGERG--RTGPAGAAGARGND-GQPGPAGPPGP---VGPAGGPGFPGAPGAK 374
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 34 GNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
G PG+ + + GP GP+ PA R RG++ GE+ + R+ P T P
Sbjct: 107 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGD-RGDK-GEKGAPGPRGRDGEPGTPGNP 161
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 13 RCSPSWSGTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGE 71
R P +G G F G P +PG PG +GP PG P P + +AGE
Sbjct: 140 RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG---KPGKAGE 196
Query: 72 RRMDRTQAREVRPETGSLP 90
R Q P T LP
Sbjct: 197 RGPPGPQGARGFPGTPGLP 215
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 2 RAER--PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSH 59
R ER PG+R SP G G G P PG G GP PG PP L+
Sbjct: 629 RGERGFPGERG----SPGAQGLQGPR--GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM 682
Query: 60 RRSHLRGEEAGERRMDRTQAREVRPE 85
AG + DR E PE
Sbjct: 683 PGERGAAGIAGPKG-DRGDVGEKGPE 707
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRG---EEAG 70
G P PGNPG P PG P PP L + + + G E+AG
Sbjct: 84 GEPGTPGNPG------PPGPPGPPGPPGLGGNFAAQMAGGFDEKAG 123
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 20 GTSGSSDF-GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G G S F G P PG PGEG G PG P L
Sbjct: 588 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 625
Score = 28.1 bits (61), Expect = 1.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 19 SGTSGSSDFGFPVDPGNP----GEGRGVGPGHGPGGPRPP 54
SG G++ P+ P P GE GP PG P PP
Sbjct: 1103 SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 16 PSWSGTSGSSDF----GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P G G F G P PG G+ GP GP GPR P
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPA-GPSGPRGP 1096
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
PG+R R P+ + + +D G P G PG VGP GPG P P +
Sbjct: 260 PGERG--RTGPAGAAGARGND-GQPGPAGPPGP---VGPAGGPGFPGAPGAK 305
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 34 GNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
G PG+ + + GP GP+ PA R RG++ GE+ + R+ P T P
Sbjct: 38 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGD-RGDK-GEKGAPGPRGRDGEPGTPGNP 92
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 32.3 bits (72), Expect = 0.082
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 10 PVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEE 68
P + SP G G + GFP DPGNPG+ + G G + RS ++ ++G
Sbjct: 1490 PGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNNIKGQKGSKGEQGRQGRSGQKG-VQGSP 1548
Query: 69 AGERRMDRTQAREVRPETG 87
+ R R +R +G
Sbjct: 1549 SSRGSRGREGQRGLRGVSG 1567
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRS-HLRGEE 68
GFP D G G+ +G PGGP P R + L+GEE
Sbjct: 1671 GFPGDAGQKGD---IGNPGIPGGPGPKGFRGLALTVGLKGEE 1709
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 32.3 bits (72), Expect = 0.082
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPG-GPRPPALRSH 59
GFP G G G G GPG GP GP PA H
Sbjct: 125 GFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRH 157
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 16 PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + GT G G P +PG PGE VG G PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 6 PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
PG++ P ++ P G G++ G P PG PGE RG GP G P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 10 PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
P R P G +G G P DPG PGE GR G G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G G FG P PG PG G G PG P P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
PGD P P + G G D G P PG G GP G P PP S
Sbjct: 1411 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1463
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 16 PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
P + G G D GFP PG PG VGP PG PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 6 PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P P + P G GS D G P PG PG G PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 16 PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + G G F G P PG PG +GP G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 16 PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
P G SG + G P DPG PG G+ GP PG P P L
Sbjct: 972 PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G P PGNPG VG PG P P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P G GS GFP G G+ GP PG P P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
PG P G G D G P DPG PG+ G PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
P +GT G GFP PG PG GP PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
G + + G P +PG PG +G PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
P G G G P PGNPG VG PG P P +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 16 PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + GT G G P +PG PGE VG G PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 6 PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
PG++ P ++ P G G++ G P PG PGE RG GP G P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 10 PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
P R P G +G G P DPG PGE GR G G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G G FG P PG PG G G PG P P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
PGD P P + G G D G P PG G GP G P PP S
Sbjct: 1405 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1457
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 16 PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
P + G G D GFP PG PG VGP PG PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 6 PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P P + P G GS D G P PG PG G PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 16 PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + G G F G P PG PG +GP G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 16 PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
P G SG + G P DPG PG G+ GP PG P P L
Sbjct: 972 PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G P PGNPG VG PG P P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P G GS GFP G G+ GP PG P P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
PG P G G D G P DPG PG+ G PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
P +GT G GFP PG PG GP PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
G + + G P +PG PG +G PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
P G G G P PGNPG VG PG P P +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 16 PSWSGTSGSSD----FGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + GT G G P +PG PGE VG G PG P PP
Sbjct: 1121 PGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 6 PGDR-----PVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGG---PRPPAL 56
PG++ P ++ P G G++ G P PG PGE RG GP G P PP L
Sbjct: 367 PGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGE-RGQKGDEGPPGISIPGPPGL 424
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 10 PVMRCSPSWSGTSGSSDF-GFPVDPGNPGE-GRGVGPGH--GPGGPRPPAL 56
P R P G +G G P DPG PGE GR G G P PP L
Sbjct: 294 PGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGL 344
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G G FG P PG PG G G PG P P L
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGL 1218
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS 58
PGD P P + G G D G P PG G GP G P PP S
Sbjct: 1408 PGD-PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPPGTSS 1460
Score = 28.1 bits (61), Expect = 1.5
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 16 PSWSGTSG-SSDFGFPVDPGNPGEG---------RGVGPGHGPGGPRPPAL 56
P + G G D GFP PG PG VGP PG PP L
Sbjct: 765 PGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 6 PGDRPVMRCSPSWSGTSGS-SDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P P + P G GS D G P PG PG G PG P PP
Sbjct: 1081 PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP 1130
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 16 PSWSGTSGSSDF---GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P + G G F G P PG PG +GP G P PP
Sbjct: 742 PGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPP 783
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 16 PSWSGTSGSSDF-GFPVDPGNPG-EGR-----GVGPGHGPGGPRPPAL 56
P G SG + G P DPG PG G+ GP PG P P L
Sbjct: 972 PGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGL 1019
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
G P PGNPG VG PG P P L
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGL 691
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P G GS GFP G G+ GP PG P P
Sbjct: 499 PGLPGPPGS--LGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGE----------GRGVGPGHG-PGGPRP 53
PG P G G D G P DPG PG+ G PG G PG P P
Sbjct: 655 PGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGP 714
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG 49
P +GT G GFP PG PG GP PG
Sbjct: 122 PGCNGTKGER--GFPGSPGFPGLQGPPGPPGIPG 153
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 20 GTSGSSDFGFPVDPGNPGEGRGVG----PGHGPGGP 51
G + + G P +PG PG +G PG GP GP
Sbjct: 595 GITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGP 630
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 16 PSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
P G G G P PGNPG VG PG P P +
Sbjct: 1076 PGLPGPKGEP--GLPGYPGNPGIKGSVGDPGLPGLPGTPGAK 1115
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 6 PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
PG RP +R +P W G GS + G P PG+PG G PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 19 SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
SG G D G P DPG+PG GP PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 15 SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+P + G G+S G P PG PG GP PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 15 SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
+P G G F GFP + GNPG +GP GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
GFP PG+PG+ GP GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+PG P + P+ + G GFP + GN GE +G PG P P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
RPG P P G G G PG PG GP PG P P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 6 PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
PG RP +R +P W G GS + G P PG+PG G PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 19 SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
SG G D G P DPG+PG GP PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 15 SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+P + G G+S G P PG PG GP PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 15 SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
+P G G F GFP + GNPG +GP GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
GFP PG+PG+ GP GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+PG P + P+ + G GFP + GN GE +G PG P P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
RPG P P G G G PG PG GP PG P P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 6 PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
PG RP +R +P W G GS + G P PG+PG G PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 19 SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
SG G D G P DPG+PG GP PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 15 SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+P + G G+S G P PG PG GP PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 15 SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
+P G G F GFP + GNPG +GP GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
GFP PG+PG+ GP GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+PG P + P+ + G GFP + GN GE +G PG P P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
RPG P P G G G PG PG GP PG P P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 6 PGD-RPVMRCSPSWSGTSGSS-DFGFPVD-----PGNPGEGRGVGPGHGPGGPRPP 54
PG RP +R +P W G GS + G P PG+PG G PG P PP
Sbjct: 383 PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPP 438
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 19 SGTSGSSDFGFPVDPGNPGEGRGVGPGHGPG-GPR 52
SG G D G P DPG+PG GP PG GP+
Sbjct: 589 SGEKG--DQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 15 SPSWSGTSGSSDF-------GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+P + G G+S G P PG PG GP PG P PP
Sbjct: 754 TPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQPGPP 800
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 15 SPSWSGTSGSSDF-GFPV---DPGNPGEGRGVGPGHGPGGPR-PPALR 57
+P G G F GFP + GNPG +GP GP GP+ PP +R
Sbjct: 1299 TPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-PGPIGPKGPPGVR 1345
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 28 GFPVDPGNPGEGRGVGPG--HGPGGPR 52
GFP PG+PG+ GP GP GP+
Sbjct: 52 GFPGPPGSPGQKGFTGPEGLPGPQGPK 78
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
+PG P + P+ + G GFP + GN GE +G PG P P
Sbjct: 734 KPG-LPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTP 782
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 RPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPAL 56
RPG P P G G G PG PG GP PG P P L
Sbjct: 1063 RPGP-PGPTGDPGLPGDMGKK--GEMGQPGPPGHLGPAGPEGAPGSPGSPGL 1111
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 2 RAERPGDRPVMRCSPSWSGTSGSSDF-GFPVD------PGNPGEGRGVGPGHGPGGPRPP 54
R E P P C P + G G+ F GFP PG+PG +G PG P P
Sbjct: 107 RREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQ 166
Query: 55 ALRSHR 60
+ +
Sbjct: 167 GQKGEK 172
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 2 RAERPGDRPVMRCSPSWSGTSGSSDF-GFPVD------PGNPGEGRGVGPGHGPGGPRPP 54
R E P P C P + G G+ F GFP PG+PG +G PG P P
Sbjct: 107 RREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQ 166
Query: 55 ALRSHR 60
+ +
Sbjct: 167 GQKGEK 172
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/63 (33%), Positives = 22/63 (34%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPETG 87
GF PG PGE GP G P PP + GER Q P T
Sbjct: 200 GFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 259
Query: 88 SLP 90
LP
Sbjct: 260 GLP 262
Score = 28.9 bits (63), Expect = 0.90
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 GFPVDPGNPGEGRGVGPGHGPGGPRPP 54
G P PG+PGE +G GP GPR P
Sbjct: 1118 GPPGPPGSPGE-QGPSGASGPAGPRGP 1143
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 6 PGDRPVMRCSPSWSGTSG-SSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P P +P G +G G P G G+ VGP PG P PP
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPP 1189
Score = 26.2 bits (56), Expect = 5.9
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 28 GFPVDPGNPGEGRGVGPG-----HGPGGPR-PPALR----SHRRSHLRGEEAGERRMDRT 77
GFP PG GE GP GP GP PP L R G E R
Sbjct: 971 GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Query: 78 QAREVRPETG 87
A+ R ETG
Sbjct: 1031 GAKGDRGETG 1040
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 3 AERPGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALR 57
A RPG+ + P G +GS G P G G G PG P PP R
Sbjct: 526 AGRPGEAGL----PGAKGLTGSP--GSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 30 PVDPGNPGEGRGVGPGHGPGGPRPPA 55
P+ PG G G G GPG GPG +PP+
Sbjct: 15 PLPPG--GAGPGPGPGPGPGAGKPPS 38
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 33 PGNPGEGRGVGPGHGPGG------PRPPALRSHRRSHLRGEEAGERRMDRTQAREVRPE 85
P PG G G GPG GPG P+ P L + R + ++A RE R +
Sbjct: 58 PPVPGPGPGPGPGPGPGSTSRRLDPKEP-LGNQRAASPTPKQASATTPGHESPRETRAQ 115
>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
Length = 485
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 15 SPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPA 55
S S SG S G PG PG G G GPGHG G PA
Sbjct: 157 SGSGSGPGCGSVPGSGSGPG-PGSGPGSGPGHGSGSHPGPA 196
>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
Length = 501
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 15 SPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPA 55
S S SG S G PG PG G G GPGHG G PA
Sbjct: 157 SGSGSGPGCGSVPGSGSGPG-PGSGPGSGPGHGSGSHPGPA 196
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 13 RCSPSWSGTSGSSDFGFPVDPGN---PGEGRGVGPGHGPGG 50
+CS GT+G G PG G G+G G GHG GG
Sbjct: 544 QCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGPGDGHGSGG 584
Score = 25.4 bits (54), Expect = 10.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 13 RCSPSWSGTSGSSDFGFPVDPGNP--GEGRGVGPGHGPGGPRPP 54
+CS G+ G GN +G+G GHG GG + P
Sbjct: 521 QCSGEGQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRP 564
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 6 PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPP 54
P P P ++GTS S + +P P VG G+ PGG PP
Sbjct: 224 PPPPPPPALVPGYNGTSNLSSYSYPSASYPP--QTAVGSGYSPGGAPPP 270
>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo
sapiens]
Length = 454
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%)
Query: 6 PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS------- 58
PG +P + +P G P P +G+G P GPG P P A ++
Sbjct: 3 PGQQPPPQPAPQGQGQP----------PSQPPQGQG--PPSGPGQPAPAATQAAPQAPPA 50
Query: 59 -HRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
H+ H+RG+ E ++ + P+T ++P
Sbjct: 51 GHQIVHVRGD--SETDLEALFNAVMNPKTANVP 81
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 31.2 bits (69), Expect = 0.18
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 22/93 (23%)
Query: 6 PGDRPVMRCSPSWSGTSGSSDFGFPVDPGNPGEGRGVGPGHGPGGPRPPALRS------- 58
PG +P + +P G P P +G+G P GPG P P A ++
Sbjct: 3 PGQQPPPQPAPQGQGQP----------PSQPPQGQG--PPSGPGQPAPAATQAAPQAPPA 50
Query: 59 -HRRSHLRGEEAGERRMDRTQAREVRPETGSLP 90
H+ H+RG+ E ++ + P+T ++P
Sbjct: 51 GHQIVHVRGD--SETDLEALFNAVMNPKTANVP 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,834,217
Number of Sequences: 37866
Number of extensions: 391393
Number of successful extensions: 3746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 257
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 1708
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.