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Search of human proteins with 239756247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756247 PREDICTED: hypothetical protein [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756247 PREDICTED: hypothetical protein [Homo sapiens] 372 e-104
gi|239750790 PREDICTED: hypothetical protein XP_002347558 [Homo ... 361 e-100
gi|239745150 PREDICTED: hypothetical protein XP_002343411 [Homo ... 361 e-100
gi|239745134 PREDICTED: hypothetical protein XP_002343399 [Homo ... 361 e-100
gi|239745119 PREDICTED: hypothetical protein XP_002343397 [Homo ... 361 e-100
gi|239745116 PREDICTED: hypothetical protein XP_002343387 [Homo ... 361 e-100
gi|38201702 telomerase reverse transcriptase isoform 2 [Homo sap... 39 0.002
gi|109633031 telomerase reverse transcriptase isoform 1 [Homo sa... 39 0.002
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 39 0.003
gi|18959210 WIRE protein [Homo sapiens] 39 0.003
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 38 0.005
gi|190343021 Sec24-related protein D [Homo sapiens] 37 0.007
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.011
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 35 0.025
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 35 0.025
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 35 0.025
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 35 0.025
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 35 0.025
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 35 0.025
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 35 0.033
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 35 0.033
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.043
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 34 0.057
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 34 0.074
gi|64084766 fidgetin [Homo sapiens] 33 0.097
gi|24497589 aristaless related homeobox [Homo sapiens] 33 0.097
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.097
gi|124378039 SEC16 homolog A [Homo sapiens] 33 0.13
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 33 0.13
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 33 0.13
>gi|239756247 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 372 bits (956), Expect = e-104
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRSVTGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL
Sbjct: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
>gi|239750790 PREDICTED: hypothetical protein XP_002347558 [Homo
sapiens]
Length = 175
Score = 361 bits (926), Expect = e-100
Identities = 167/175 (95%), Positives = 169/175 (96%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPF KQPSPCPRQSPQGDFGWV+P
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPLGYPHQSFVSQPHPFSKQPSPCPRQSPQGDFGWVSP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRS+TGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPG PCCRLCPPLLL
Sbjct: 61 GASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGLVTPGTPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRL HGADMVPPPDQEEWNVVMSQ T
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLGHGADMVPPPDQEEWNVVMSQST 175
>gi|239745150 PREDICTED: hypothetical protein XP_002343411 [Homo
sapiens]
Length = 175
Score = 361 bits (926), Expect = e-100
Identities = 167/175 (95%), Positives = 169/175 (96%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPF KQPSPCPRQSPQGDFGWV+P
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPLGYPHQSFVSQPHPFSKQPSPCPRQSPQGDFGWVSP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRS+TGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPG PCCRLCPPLLL
Sbjct: 61 GASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGLVTPGTPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRL HGADMVPPPDQEEWNVVMSQ T
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLGHGADMVPPPDQEEWNVVMSQST 175
>gi|239745134 PREDICTED: hypothetical protein XP_002343399 [Homo
sapiens]
Length = 175
Score = 361 bits (926), Expect = e-100
Identities = 167/175 (95%), Positives = 169/175 (96%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPF KQPSPCPRQSPQGDFGWV+P
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPLGYPHQSFVSQPHPFSKQPSPCPRQSPQGDFGWVSP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRS+TGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPG PCCRLCPPLLL
Sbjct: 61 GASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGLVTPGTPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRL HGADMVPPPDQEEWNVVMSQ T
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLGHGADMVPPPDQEEWNVVMSQST 175
>gi|239745119 PREDICTED: hypothetical protein XP_002343397 [Homo
sapiens]
Length = 175
Score = 361 bits (926), Expect = e-100
Identities = 167/175 (95%), Positives = 169/175 (96%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPF KQPSPCPRQSPQGDFGWV+P
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPLGYPHQSFVSQPHPFSKQPSPCPRQSPQGDFGWVSP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRS+TGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPG PCCRLCPPLLL
Sbjct: 61 GASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGLVTPGTPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRL HGADMVPPPDQEEWNVVMSQ T
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLGHGADMVPPPDQEEWNVVMSQST 175
>gi|239745116 PREDICTED: hypothetical protein XP_002343387 [Homo
sapiens]
Length = 175
Score = 361 bits (926), Expect = e-100
Identities = 167/175 (95%), Positives = 169/175 (96%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MTRPLPESIRLLRHTGLVPPTPVP GYPHQSFVSQPHPF KQPSPCPRQSPQGDFGWV+P
Sbjct: 1 MTRPLPESIRLLRHTGLVPPTPVPLGYPHQSFVSQPHPFSKQPSPCPRQSPQGDFGWVSP 60
Query: 61 GASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLL 120
GASRS+TGPSSPAAPSLISLGSLGSHL GARPHPRQSSLGDFGLVTPG PCCRLCPPLLL
Sbjct: 61 GASRSITGPSSPAAPSLISLGSLGSHLQGARPHPRQSSLGDFGLVTPGTPCCRLCPPLLL 120
Query: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQPT 175
PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRL HGADMVPPPDQEEWNVVMSQ T
Sbjct: 121 PQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLGHGADMVPPPDQEEWNVVMSQST 175
>gi|38201702 telomerase reverse transcriptase isoform 2 [Homo
sapiens]
Length = 1120
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/149 (28%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 12 LRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQP----SPCPRQSPQGDFGWVTPGASRSVT 67
+R G+ P P S+ P K+P +P P ++P G W PG +R
Sbjct: 207 VREAGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTR--- 263
Query: 68 GPS-------SPAAPSLISLGSLGSHLXGAR-PHP---RQSSLGDFGLVTPGAPCCRLCP 116
GPS SPA P+ SL L G R HP RQ G P P CP
Sbjct: 264 GPSDRGFCVVSPARPA-EEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRPWDTPCP 322
Query: 117 PLLLPQGRPPWVLCAGVSKELGPNPVLPS 145
P+ ++ +G ++L P+ +L S
Sbjct: 323 PVYAETKH--FLYSSGDKEQLRPSFLLSS 349
>gi|109633031 telomerase reverse transcriptase isoform 1 [Homo
sapiens]
Length = 1132
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/149 (28%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 12 LRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQP----SPCPRQSPQGDFGWVTPGASRSVT 67
+R G+ P P S+ P K+P +P P ++P G W PG +R
Sbjct: 207 VREAGVPLGLPAPGARRRGGSASRSLPLPKRPRRGAAPEPERTPVGQGSWAHPGRTR--- 263
Query: 68 GPS-------SPAAPSLISLGSLGSHLXGAR-PHP---RQSSLGDFGLVTPGAPCCRLCP 116
GPS SPA P+ SL L G R HP RQ G P P CP
Sbjct: 264 GPSDRGFCVVSPARPA-EEATSLEGALSGTRHSHPSVGRQHHAGPPSTSRPPRPWDTPCP 322
Query: 117 PLLLPQGRPPWVLCAGVSKELGPNPVLPS 145
P+ ++ +G ++L P+ +L S
Sbjct: 323 PVYAETKH--FLYSSGDKEQLRPSFLLSS 349
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 19 PPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAAPSLI 78
PPTP P V Q R SP + P+G PG SRS P +P P
Sbjct: 706 PPTPAPLLLDLGIPVGQ----RSAKSPRREEEPRGGTVSPPPGTSRSA--PGTPGTPRSP 759
Query: 79 SLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQGRPPWVL 129
LG + RP P +S + + V+ G L P P+ R PW L
Sbjct: 760 PLGLISR----PRPSPLRSRIDPWSFVSAGPRPSPLPSPQPAPR-RAPWTL 805
Score = 34.3 bits (77), Expect = 0.057
Identities = 47/165 (28%), Positives = 58/165 (35%), Gaps = 34/165 (20%)
Query: 3 RPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGA 62
R L LL GL P G + S P P+PCP + P +P
Sbjct: 643 RALLRGTALLASLGLGRDLQPPGGPGRERGESPTTPPTPTPAPCPTEPPP------SPLI 696
Query: 63 SRSVTGPSSP--AAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVT---------PGAPC 111
S+ P SP AP L+ LG P + G G V+ PG P
Sbjct: 697 CFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRG--GTVSPPPGTSRSAPGTPG 754
Query: 112 CRLCPPL-LLPQGRP--------PWVLCAGVSKELGPNP-VLPSP 146
PPL L+ + RP PW + GP P LPSP
Sbjct: 755 TPRSPPLGLISRPRPSPLRSRIDPWSFVSA-----GPRPSPLPSP 794
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/150 (30%), Positives = 55/150 (36%), Gaps = 21/150 (14%)
Query: 18 VPPTPVPXGYPHQSFVSQPHPFRKQPSPCP-RQSPQGDFGWVTPGASRS----VTGPSSP 72
+PPTP +P + P P + PSP R P G P R GPSSP
Sbjct: 209 LPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSP 268
Query: 73 AAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQGRPPWVLCAG 132
S L + L P P + GL P P P LL + PP A
Sbjct: 269 TNESAPELPQRHNSLHRKTPGPVR------GLAPP--PPTSASPSLLSNRPPPP----AR 316
Query: 133 VSKELGPNPVLPSPIVEQRLRHGADMVPPP 162
G P P P++ R+GA PPP
Sbjct: 317 DPPSRGAAPPPPPPVI----RNGARDAPPP 342
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 37.7 bits (86), Expect = 0.005
Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 19 PPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPG-ASRSVTGPSSP----- 72
PP P P P ++P P ++ P P R P G PG A S P+ P
Sbjct: 1103 PPPPRPVAPP-----TRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGV 1157
Query: 73 -AAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLP----QGRPPW 127
+AP + S G ++ ++S G L P P P LP + + P
Sbjct: 1158 ISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPL 1217
Query: 128 VLCAGVSKELGPNPVLPSP 146
V A + GP P L +P
Sbjct: 1218 VPVAAPMPQSGPQPNLETP 1236
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 37.4 bits (85), Expect = 0.007
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 16 GLVPPTPVPXGYPHQ----SFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSS 71
G++PP P P G PHQ + HP ++ P P P + P A S GP S
Sbjct: 55 GMLPPGPPPPG-PHQFGQNGAHATGHPPQRFPGPPPVNNVASSHAPYQPSAQSSYPGPIS 113
Query: 72 PAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQGRPPWVLCA 131
+ S+ LGS L + + S + AP P PP L A
Sbjct: 114 TS-----SVTQLGSQLSAMQINSYGSGM---------AP----------PSQGPPGPLSA 149
Query: 132 GVSKELGPNPVLPSPIVEQRLRHGADMVPPP 162
S + P P PS L+ G+ ++PPP
Sbjct: 150 -TSLQTPPRPPQPS-----ILQPGSQVLPPP 174
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.6 bits (83), Expect = 0.011
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 43 PSPCPRQSPQGDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDF 102
P+PCP Q+P P S+ P A P+L S G P P S L
Sbjct: 564 PAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQG------LPSPPLSPL--- 614
Query: 103 GLVTPGAPCCRLCPPLLLPQGRPPWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPP 162
P AP PPL P P +S P+P P+ + L+ A PPP
Sbjct: 615 ATPPPQAPPXLALPPLQAPPSPP---ASPPLSPLATPSPQAPNALAVHLLQ--APFSPPP 669
Score = 30.4 bits (67), Expect = 0.82
Identities = 45/170 (26%), Positives = 61/170 (35%), Gaps = 24/170 (14%)
Query: 18 VPPTPVPXGYPHQSFVSQPH---------PFRKQPSPCPRQSPQGDFGWVTPGASRSVTG 68
VPP+P P P + P P + PSP P P ++P A
Sbjct: 737 VPPSP-PASPPMSPSATPPPRVPPLLAAPPLQVPPSP-PASLP------MSPLAKPPPQA 788
Query: 69 PSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVT--PGAPCCRLCPPLLLPQGRP- 125
P + A P L +L S + G P +SL L T P AP P L +P P
Sbjct: 789 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 848
Query: 126 -PWVLCAGVSKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVVMSQP 174
P + GP+ + P + L G PPP + +S P
Sbjct: 849 SPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP---PPPPSRSPSSTLSGP 895
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 35.4 bits (80), Expect = 0.025
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 11 LLRHTGLVPPTPVPXGYPHQ---------SFVSQPHPFRKQPSPCP-RQSPQGDFGWVTP 60
L R+ PP P P P S PHP ++P+P R P G GWV+
Sbjct: 77 LQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSI 136
Query: 61 GASRSVTGPSSPAAPSLISLGS 82
S P +PAAP+ SLG+
Sbjct: 137 ALGGSAA-PGNPAAPASPSLGA 157
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 35.4 bits (80), Expect = 0.025
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 11 LLRHTGLVPPTPVPXGYPHQ---------SFVSQPHPFRKQPSPCP-RQSPQGDFGWVTP 60
L R+ PP P P P S PHP ++P+P R P G GWV+
Sbjct: 77 LQRNASEDPPPPGPFRAPSPGSPRCQRPASPAPHPHPTLERPAPRGVRCFPAGTRGWVSI 136
Query: 61 GASRSVTGPSSPAAPSLISLGS 82
S P +PAAP+ SLG+
Sbjct: 137 ALGGSAA-PGNPAAPASPSLGA 157
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 35.4 bits (80), Expect = 0.025
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 20 PTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGP-SSPAAPSLI 78
PTP P P + + P P P+P P +P G G PG G PA P L
Sbjct: 26 PTPTPAPSPASAPIPTPTP---APAPAPAAAPAGSTGTGGPGVGSGGAGSGGDPARPGLS 82
Query: 79 SLGSLGSHLXGARPHPRQSSLGDFGL 104
R PR L G+
Sbjct: 83 QQQRASQRKAQVRGLPRAKKLEKLGV 108
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 35.4 bits (80), Expect = 0.025
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 19 PPTPVPXGYPHQSFVSQ---PHPFRKQPSPCPRQSP-QGDFGWVTPGASRSVTGPSSPAA 74
PP+ P Y P PF+K P P +G G +PG P P
Sbjct: 271 PPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSG--SPGPEP----PGRPDG 324
Query: 75 PSLI--------SLGSLGSHLXGAR--PHPRQSSLGDFGLVTPGAPCCRLCPPLLLP 121
PSL+ LGS G L R P R G V+PG P L PP P
Sbjct: 325 PSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPRYP 381
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 35.4 bits (80), Expect = 0.025
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 19 PPTPVPXGYPHQSFVSQ---PHPFRKQPSPCPRQSP-QGDFGWVTPGASRSVTGPSSPAA 74
PP+ P Y P PF+K P P +G G +PG P P
Sbjct: 252 PPSAGPAAYKEPPLALPSLPPLPFQKLEEAAPPSDPFRGGSG--SPGPEP----PGRPDG 305
Query: 75 PSLI--------SLGSLGSHLXGAR--PHPRQSSLGDFGLVTPGAPCCRLCPPLLLP 121
PSL+ LGS G L R P R G V+PG P L PP P
Sbjct: 306 PSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGGPPLGLAPPPRYP 362
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 35.4 bits (80), Expect = 0.025
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 16 GLVPPTPVPXGYPH--QSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPA 73
G VPP P G PH F +Q P P P G G G + P P
Sbjct: 1034 GAVPPGVPPPG-PHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPP 1092
Query: 74 APSLISLGSLGSHLXGARPHP 94
APS+I GSL + P P
Sbjct: 1093 APSIIPFGSLADSISINLPAP 1113
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.0 bits (79), Expect = 0.033
Identities = 54/184 (29%), Positives = 61/184 (33%), Gaps = 19/184 (10%)
Query: 4 PLPESIRLLRHTGLVPP-------TPVPXGYPHQSFVSQ-----PHPFRKQPSPCPRQSP 51
P P R H VPP PVP P S SQ P P R P P P S
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPVP-STPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 52 QGDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPC 111
D P + S++ S+P PS G L P P + G G + P P
Sbjct: 327 GNDETPRLPQRNLSLSS-STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV 385
Query: 112 CRLCPPLLLPQGRPPWVLCAGV-SKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVV 170
R P +GV S GP P LP R GA PPP N
Sbjct: 386 SRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLP----PDRPSAGAPPPPPPSTSIRNGF 441
Query: 171 MSQP 174
P
Sbjct: 442 QDSP 445
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.0 bits (79), Expect = 0.033
Identities = 54/184 (29%), Positives = 61/184 (33%), Gaps = 19/184 (10%)
Query: 4 PLPESIRLLRHTGLVPP-------TPVPXGYPHQSFVSQ-----PHPFRKQPSPCPRQSP 51
P P R H VPP PVP P S SQ P P R P P P S
Sbjct: 268 PPPVGNRPSIHREAVPPPPPQNNKPPVP-STPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 52 QGDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPC 111
D P + S++ S+P PS G L P P + G G + P P
Sbjct: 327 GNDETPRLPQRNLSLSS-STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV 385
Query: 112 CRLCPPLLLPQGRPPWVLCAGV-SKELGPNPVLPSPIVEQRLRHGADMVPPPDQEEWNVV 170
R P +GV S GP P LP R GA PPP N
Sbjct: 386 SRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLP----PDRPSAGAPPPPPPSTSIRNGF 441
Query: 171 MSQP 174
P
Sbjct: 442 QDSP 445
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 34.7 bits (78), Expect = 0.043
Identities = 45/141 (31%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 16 GLVPPTPVPX-GYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWV---------TPGASRS 65
GL P+ + G P V P F+ +P P P GD G PGA
Sbjct: 162 GLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQ 221
Query: 66 VTGPSSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQGRP 125
P P P LG G L G P G+ G PG P R P + P+G P
Sbjct: 222 GGAPGPPGLPGPAGLGKPG--LDGLPGAP--GDKGESG--PPGVPGPRGEPGAVGPKG-P 274
Query: 126 PWVLCAGVSKELG-PNPVLPS 145
P V GV G P P PS
Sbjct: 275 PGVDGVGVPGAAGLPGPQGPS 295
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 34.3 bits (77), Expect = 0.057
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 34 SQPHPFRKQPS-PCPRQSPQ--GDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGA 90
S H P+ PC +P D P AS S + P+SPAA SL H A
Sbjct: 1109 SPTHSLSPSPTTPCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSL--HGLAA 1166
Query: 91 RPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQGRPPWVLCAGVSKELGPNPVLPSPIVEQ 150
+ P + G + P CPP+ P R P L +P P+P
Sbjct: 1167 KLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSP--------SPLPGHP--PAPARSP 1216
Query: 151 RLRHG 155
RLR G
Sbjct: 1217 RLRRG 1221
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 33.9 bits (76), Expect = 0.074
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 70 SSPAAPSLISLGSLGSHLXGARPHPRQSSLGDFGLVTPGAP--CCRLCPPLLLPQGRPPW 127
+ P + + + LG + GA+PH R ++ G +TP P C L P LPQ PP
Sbjct: 596 TEPDSRQQVYISHLGHGVRGAQPHGRATA-GRSRELTPFHPAHCACLEPTDGLPQSEPPH 654
Query: 128 VLCA 131
LCA
Sbjct: 655 QLCA 658
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 33.5 bits (75), Expect = 0.097
Identities = 39/147 (26%), Positives = 55/147 (37%), Gaps = 28/147 (19%)
Query: 14 HTGLVPPTPVPX---GYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPS 70
H GL P Y H ++ SQP P P P P S G + P P
Sbjct: 177 HAGLPSQEYAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSS----GLLQP-------PPP 225
Query: 71 SPAAPSLI----SLGSLGSHLXGARPHPRQSSLGDFGLVTPGAPCCRLCPPLLLPQG--- 123
P P+L+ +L S+ + +P Q+++G G GAP P LP G
Sbjct: 226 PPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGS-GYSPGGAP---PPPSAYLPSGIPA 281
Query: 124 ---RPPWVLCAGVSKELGPNPVLPSPI 147
PP + + G P+ PS +
Sbjct: 282 PTPLPPTTVPGYTYQGHGLTPIAPSAL 308
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 33.5 bits (75), Expect = 0.097
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 24 PXGYPHQSFVSQPHPFRK--QPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAAPSLISLG 81
P G P +S HP SP P P D W A+ + PS P P SL
Sbjct: 395 PPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLP 454
Query: 82 SLGSHL 87
G+ L
Sbjct: 455 PSGAPL 460
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.5 bits (75), Expect = 0.097
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 4 PLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGAS 63
P P ++ L G+ P P P S V+ P P +P P+Q+P +P +
Sbjct: 865 PTPSAVTPLSPKGVTLP---PKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKA 921
Query: 64 RSVTGPSS-PAAPS 76
R+ P PA+PS
Sbjct: 922 RATPAPKGIPASPS 935
Score = 31.6 bits (70), Expect = 0.37
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 1 MTRPLPESIRLLRHTGLVPPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTP 60
MT P+ R +P +P P G P + P P +P P+ +P TP
Sbjct: 913 MTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP-------TP 965
Query: 61 GASRSVTGPSSPAAPS 76
A+ + PA PS
Sbjct: 966 PAATPPSPKGGPATPS 981
Score = 30.4 bits (67), Expect = 0.82
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 19 PPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAA 74
P TP P G P V+ P P K P +P G TP S GP+ PAA
Sbjct: 1324 PGTPPPKGAPTPPAVTPPSP--KGTPTLPATTPSSKGGPTTPS---SKEGPTPPAA 1374
Score = 27.7 bits (60), Expect = 5.3
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 19 PPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAA 74
P TP P G P + P P +P P+ +P TP A + SPAA
Sbjct: 977 PATPSPKGAPTPPAATPPSPKGGPATPSPKGAP-------TPPAVTPPSPKGSPAA 1025
Score = 27.7 bits (60), Expect = 5.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 17 LVPP---TPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPA 73
L+PP +P P P V+ P P + +P P+ +P VTP + + P+SPA
Sbjct: 1600 LIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP--PVTPSSLKD--SPTSPA 1655
Query: 74 A 74
+
Sbjct: 1656 S 1656
Score = 26.9 bits (58), Expect = 9.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 19 PPTPVPXGYPHQSFVSQPHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAAPS 76
P TP P P + P P +P P+ +P TP A+ + PA PS
Sbjct: 954 PATPSPKWAPTPPAATPPSPKGGPATPSPKGAP-------TPPAATPPSPKGGPATPS 1004
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/94 (35%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 37 HPFRKQPS---PCPRQSPQGDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGARPH 93
HP P P RQ+P G VTP AS PS P P L G G G +P
Sbjct: 174 HPHGNMPGLDRPLSRQNPHD--GVVTPAAS-----PSLPQ-PGLQMPGQWGPVQGGPQPS 225
Query: 94 PRQSSLGDFGLVTPGAPCCRLCP----PLLLPQG 123
+ S G V G PC P P +L QG
Sbjct: 226 GQHRSPCPEGPVPSGVPCATSVPHFPTPSILHQG 259
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 33.1 bits (74), Expect = 0.13
Identities = 32/89 (35%), Positives = 35/89 (39%), Gaps = 30/89 (33%)
Query: 44 SPCPRQSPQGDFGWVTPGASRSVTG-----PSSPAAPSLISLGSLGSHLXGARPHPRQSS 98
SP PR P G P A+R TG P PA PSL ARP + S
Sbjct: 124 SPAPR-GPCGHLECHGP-AARGDTGDTGASPPPPAGPSL------------ARPDAARPS 169
Query: 99 LGDFGLVTPGAPCCRLCPPLLLPQGRPPW 127
+ P AP C CP P G PPW
Sbjct: 170 V-------PSAPRCASCP----PHGPPPW 187
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 33.1 bits (74), Expect = 0.13
Identities = 30/100 (30%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 36 PHPFRKQPSPCPRQSPQGDFGWVTPGASRSVTGPSSPAAPSLISLGSLGSHLXGARPHPR 95
P FR +GD G P R GP P+ P + GS GS G R P
Sbjct: 337 PPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVP-GSPGSSRPGLRGAPG 395
Query: 96 QSSL----------GDFGLVTPGAPCCRLCPPLLLPQGRP 125
L G + TPG+P C P L G P
Sbjct: 396 WPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPP 435
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,904,319
Number of Sequences: 37866
Number of extensions: 761066
Number of successful extensions: 3100
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 2831
Number of HSP's gapped (non-prelim): 544
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.