Guide to the Human Genome
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Name: LOC100293218 Sequence: fasta or formatted (185aa) NCBI GI: 239756243
Description:

PREDICTED: similar to hCG2038990

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         19           3
 C cysteine            5.4         10           1
 D aspartate           2.7          5           1
 E glutamate           4.3          8           3
 F phenylalanine       2.7          5           2
 G glycine            11.4         21           2
 H histidine           4.9          9           1
 I isoleucine          2.2          4           1
 K lysine              1.6          3           1
 L leucine            11.4         21           2
 M methionine          2.7          5           1
 N asparagine          1.1          2           1
 P proline             5.4         10           1
 Q glutamine           1.6          3           1
 R arginine            9.2         17           2
 S serine              9.7         18           2
 T threonine           3.2          6           1
 V valine              6.5         12           2
 W tryptophan          2.7          5           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038990 
LOC100291299          0.014   PREDICTED: hypothetical protein XP_002347506 
LOC100287558          0.011   PREDICTED: hypothetical protein XP_002343325 
HMX1                  0.011   homeo box (H6 family) 1 
RUFY4                 0.011   RUN and FYVE domain containing 4 
LOC100292720          0.008   PREDICTED: hypothetical protein 
LOC100286893          0.008   PREDICTED: hypothetical protein 
LOC100286893          0.008   PREDICTED: hypothetical protein XP_002342344 
NUS1                  0.008   nuclear undecaprenyl pyrophosphate synthase 1 homolo...
PNPLA6                0.008   patatin-like phospholipase domain containing 6 [Hom...
ANKRD13C              0.008   ankyrin repeat domain 13C 
LOC100287184          0.008   PREDICTED: hypothetical protein XP_002343805 
LOC100288508          0.008   PREDICTED: hypothetical protein XP_002343798 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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