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Search of human proteins with 239755881
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755881 PREDICTED: hypothetical protein XP_002344730 [Homo
sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755881 PREDICTED: hypothetical protein XP_002344730 [Homo ... 193 3e-50
gi|239750407 PREDICTED: hypothetical protein XP_002347415 [Homo ... 193 3e-50
gi|239744707 PREDICTED: hypothetical protein XP_002343200 [Homo ... 193 3e-50
gi|74024893 low density lipoprotein receptor class A domain cont... 35 0.017
gi|4503079 colony stimulating factor 3 isoform a precursor [Homo... 31 0.18
gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] 30 0.53
gi|157502197 hypothetical protein LOC9772 [Homo sapiens] 28 1.2
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 28 1.6
gi|46250735 keratin associated protein 10-2 [Homo sapiens] 27 2.6
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens] 27 3.5
gi|27437049 colony stimulating factor 3 isoform b precursor [Hom... 27 3.5
gi|188536004 zinc finger protein 469 [Homo sapiens] 27 3.5
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 27 3.5
gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens] 27 4.5
gi|169162399 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|157502181 two pore segment channel 2 [Homo sapiens] 27 4.5
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 27 4.5
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 26 5.9
gi|239753625 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo ... 26 5.9
gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo ... 26 5.9
gi|47078292 integrin beta chain, beta 3 precursor [Homo sapiens] 26 7.7
gi|169215908 PREDICTED: family with sequence similarity 108, mem... 26 7.7
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 26 7.7
gi|239756045 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens] 26 7.7
gi|239755404 PREDICTED: hypothetical protein XP_002344554 [Homo ... 26 7.7
gi|169215726 PREDICTED: family with sequence similarity 108, mem... 26 7.7
gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens] 26 7.7
>gi|239755881 PREDICTED: hypothetical protein XP_002344730 [Homo
sapiens]
Length = 87
Score = 193 bits (490), Expect = 3e-50
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS
Sbjct: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
Query: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
CTPPAPPYQASSGVLRLAPCHCCLCAG
Sbjct: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|239750407 PREDICTED: hypothetical protein XP_002347415 [Homo
sapiens]
Length = 87
Score = 193 bits (490), Expect = 3e-50
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS
Sbjct: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
Query: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
CTPPAPPYQASSGVLRLAPCHCCLCAG
Sbjct: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|239744707 PREDICTED: hypothetical protein XP_002343200 [Homo
sapiens]
Length = 87
Score = 193 bits (490), Expect = 3e-50
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS
Sbjct: 1 MSLVYKEHMKFCHGPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPS 60
Query: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
CTPPAPPYQASSGVLRLAPCHCCLCAG
Sbjct: 61 CTPPAPPYQASSGVLRLAPCHCCLCAG 87
>gi|74024893 low density lipoprotein receptor class A domain
containing 1 [Homo sapiens]
Length = 205
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 17 AEPESLAGGSRGGGHV-------ALAQALLFVCATFCLCCSLTLLPLGGPSCTPPA 65
AE ++ GG GGGH+ L+ +LL + AT +L + LG PSCTP A
Sbjct: 15 AESKAHPGGEAGGGHLCCSRRGACLSASLLLLLATVAALIALVTI-LGLPSCTPGA 69
>gi|4503079 colony stimulating factor 3 isoform a precursor [Homo
sapiens]
Length = 207
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 29 GGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
G AL + L+ CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 56 GDGAALQEKLVSECATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 114
>gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens]
Length = 504
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 13 HGPPAEPESLAGGSRG--GGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQA 70
H P EPE+ G G V L LL++ A C CC P P A
Sbjct: 372 HFPRPEPEAFNTGFTTLLGCAVGLVLVLLYLFAPPCRCCRRACRCRRWPQTPSPLQELSA 431
Query: 71 SSGVLRLAP 79
S VL P
Sbjct: 432 QSSVLSTTP 440
>gi|157502197 hypothetical protein LOC9772 [Homo sapiens]
Length = 1356
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 42 CATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHC 82
C F L C LTL+ + SC PP +++ +L L+ C C
Sbjct: 1092 CFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLS-CFC 1131
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 19 PESLAGGSRGGGHVALAQALLFVCATFCLCC 49
P AGG RGGGH +Q + C CC
Sbjct: 20 PRGGAGGRRGGGHGRGSQCGSTTLSYTCYCC 50
>gi|46250735 keratin associated protein 10-2 [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 34 LAQALLFVCATFCL-----------CCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHC 82
+A + + +C++ C CC L P G PSC PAP + C
Sbjct: 1 MAASTMSICSSACTNSWQVDDCPESCCEL---PCGTPSCCAPAPCLTLVCTPVSCVSSPC 57
Query: 83 CLCA 86
C A
Sbjct: 58 CQAA 61
>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
Length = 200
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 41 VCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
+CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 61 LCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 107
>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
sapiens]
Length = 204
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 41 VCATFCLCCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
+CAT+ LC L+ LG P AP S L+LA C L +G
Sbjct: 65 LCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSG 111
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 15 PPAEPESLAGGSRGGG 30
PPAEPE + GSR GG
Sbjct: 251 PPAEPEPIPKGSRPGG 266
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 55 PLGGPSCTPPAPPYQA 70
P GPSC PP PY A
Sbjct: 89 PPSGPSCPPPGGPYPA 104
>gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens]
Length = 293
Score = 26.6 bits (57), Expect = 4.5
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 14 GPPAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLT-----LLPLGGP-SCTPPAPP 67
G A P +L G VAL + L +C LCC L L G P SC P + P
Sbjct: 143 GSEASP-ALPGLKLSADQVALVYSTLGLCLCAVLCCFLVAVACFLKKRGDPCSCQPRSRP 201
Query: 68 YQA 70
Q+
Sbjct: 202 RQS 204
>gi|169162399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 392
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 15 PPAEPESL---AGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQAS 71
PP +P L + G +GG A ++ A L SL L P PP PP +AS
Sbjct: 15 PPQDPTGLTCPSPGRKGGAWQVAAWPVVSGGAGHPLFSSLLLDSPPWPPACPPTPPAKAS 74
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 15 PPAEPESL---AGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAPPYQAS 71
PP +P L + G +GG A ++ A L SL L P PP PP +AS
Sbjct: 15 PPQDPTGLTCPSPGRKGGAWQVAAWPVVSGGAGHPLFSSLLLDSPPWPPACPPTPPAKAS 74
>gi|157502181 two pore segment channel 2 [Homo sapiens]
Length = 752
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 15 PPAEPESLAGGSRGGG 30
P AE E L GG+RGGG
Sbjct: 4 PQAESEPLLGGARGGG 19
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 55 PLGGPSCTPPAPPYQASSGVLRLAPCHCCLCAG 87
P G S P P G APC CC C G
Sbjct: 44 PAGRQSPAKPEEP-----GAPEAAPCACCCCCG 71
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 29 GGHVALAQALLFV------CATFCLCCSLTLLPLGGPSCTPPAP 66
GG VA ++ L CA+ CL C L GP+C+ PAP
Sbjct: 7895 GGAVAFLRSTLCAQPWGRPCASSCLQCPW--LTEEGPACSRPAP 7936
>gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 2 SLVYKEHMKFCHGPPAEPESLAG 24
+ V + H + GP EPE+LAG
Sbjct: 15 AFVLRPHAEHAQGPAGEPEALAG 37
>gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 2 SLVYKEHMKFCHGPPAEPESLAG 24
+ V + H + GP EPE+LAG
Sbjct: 15 AFVLRPHAEHAQGPAGEPEALAG 37
>gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo
sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 2 SLVYKEHMKFCHGPPAEPESLAG 24
+ V + H + GP EPE+LAG
Sbjct: 15 AFVLRPHAEHAQGPAGEPEALAG 37
>gi|47078292 integrin beta chain, beta 3 precursor [Homo sapiens]
Length = 788
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 21 SLAGGSRGGGHVALAQAL-----LFVCATFCLCCSLTLLPLGGPSC 61
+LAG GG ++ + + + C CS LPLG P C
Sbjct: 19 ALAGVGVGGPNICTTRGVSSCQQCLAVSPMCAWCSDEALPLGSPRC 64
>gi|169215908 PREDICTED: family with sequence similarity 108, member
A5 [Homo sapiens]
Length = 403
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 16 PAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAP 66
PA P + GG GGG A A+ + + LCC C PP P
Sbjct: 74 PARPGGVVGGGPGGGPAREAPAMNGLSLSE-LCCLF---------CYPPCP 114
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 50 SLTLLPLGGPSCTPPAPPYQASSG 73
S L G P PPAPP+ A+ G
Sbjct: 32 SARFLSFGPPFPAPPAPPFPAAPG 55
>gi|239756045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 48 CCSLTLLPLGGPSCTPPAPPYQASSGVLRLAPCHCCLCA 86
C L L L G PP P G A HCCLC+
Sbjct: 85 CLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCCLCS 123
>gi|239755460 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 1064
Score = 25.8 bits (55), Expect = 7.7
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 12 CHGPPAEPESLAGGSRGGGHVALAQALLFVC--ATFCLCCSLTLLPLGGPSCTPPA-PPY 68
C GP EP + GH C AT+ L C L PL P+C P P
Sbjct: 688 CLGPHGEPVKV-------GHTVGMDCQECTCEAATWTLTCRPKLCPL-PPACPLPGFVPV 739
Query: 69 QASSGVLRLAPCHCCLC 85
A+ + P + C C
Sbjct: 740 PAAPQAGQCCPQYSCAC 756
>gi|239755404 PREDICTED: hypothetical protein XP_002344554 [Homo
sapiens]
Length = 171
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 46 CLCCSLTLLPLGGPSC----TPPAPPYQASSG 73
CLCCS + +P+ C TP AP + +G
Sbjct: 82 CLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAG 113
>gi|169215726 PREDICTED: family with sequence similarity 108, member
A5 [Homo sapiens]
Length = 403
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 16 PAEPESLAGGSRGGGHVALAQALLFVCATFCLCCSLTLLPLGGPSCTPPAP 66
PA P + GG GGG A A+ + + LCC C PP P
Sbjct: 74 PARPGGVVGGGPGGGPAREAPAMNGLSLSE-LCCLF---------CYPPCP 114
>gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 50 SLTLLPLGGPSCTPPAPPYQASSG 73
S L G P PPAPP+ A+ G
Sbjct: 84 SARFLSFGPPFPAPPAPPFPAAPG 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.498
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,773,435
Number of Sequences: 37866
Number of extensions: 212848
Number of successful extensions: 1643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 43
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.