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Search of human proteins with 239755457
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755457 PREDICTED: similar to patatin-like phospholipase
domain containing 2 [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755457 PREDICTED: similar to patatin-like phospholipase do... 467 e-132
gi|32698724 patatin-like phospholipase domain containing 2 [Homo... 318 3e-87
gi|17196626 patatin-like phospholipase domain containing 3 [Homo... 75 6e-14
gi|20304127 patatin-like phospholipase domain containing 5 [Homo... 66 3e-11
gi|215422355 patatin-like phospholipase domain containing 4 [Hom... 55 4e-08
gi|42415471 patatin-like phospholipase domain containing 4 [Homo... 55 4e-08
gi|238776840 patatin-like phospholipase domain containing 1 isof... 44 9e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 39 0.005
gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase ... 39 0.005
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 37 0.011
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 35 0.040
gi|154146231 DMRT-like family A2 [Homo sapiens] 35 0.052
gi|148612811 ubiquitin specific protease 43 [Homo sapiens] 35 0.052
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 35 0.052
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.12
gi|9945318 MAX binding protein [Homo sapiens] 34 0.12
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 33 0.15
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 33 0.15
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 33 0.15
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 33 0.15
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 33 0.15
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 33 0.15
gi|33286436 gametogenetin [Homo sapiens] 33 0.15
gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo ... 33 0.20
gi|55741677 SET domain containing 1A [Homo sapiens] 33 0.20
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 33 0.20
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 33 0.20
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 33 0.20
gi|9951913 G protein-coupled receptor 162 isoform 2 [Homo sapiens] 33 0.20
gi|7656843 G protein-coupled receptor 162 isoform 1 [Homo sapiens] 33 0.20
>gi|239755457 PREDICTED: similar to patatin-like phospholipase
domain containing 2 [Homo sapiens]
Length = 226
Score = 467 bits (1201), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV
Sbjct: 1 MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
Query: 61 CLVPERAARPVPSLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPSRLPEQVE 120
CLVPERAARPVPSLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPSRLPEQVE
Sbjct: 61 CLVPERAARPVPSLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPSRLPEQVE 120
Query: 121 LRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEA 180
LRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEA
Sbjct: 121 LRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEA 180
Query: 181 LRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGALGL 226
LRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGALGL
Sbjct: 181 LRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGALGL 226
>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
sapiens]
Length = 504
Score = 318 bits (814), Expect = 3e-87
Identities = 158/174 (90%), Positives = 160/174 (91%)
Query: 53 ATALVTGVCLVPERAARPVPSLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLP 112
ATA++ L E A LLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLP
Sbjct: 331 ATAMMVPYTLPLESALSFTIRLLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLP 390
Query: 113 SRLPEQVELRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCT 172
SRLPEQVELRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCT
Sbjct: 391 SRLPEQVELRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCT 450
Query: 173 NVAFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGALGL 226
NVAFPPEALRMRAPADPAPAPADPASPQHQ AGPAPLLSTPAPEARPVIGALGL
Sbjct: 451 NVAFPPEALRMRAPADPAPAPADPASPQHQLAGPAPLLSTPAPEARPVIGALGL 504
Score = 131 bits (330), Expect = 4e-31
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV
Sbjct: 1 MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
Query: 61 CL 62
CL
Sbjct: 61 CL 62
>gi|17196626 patatin-like phospholipase domain containing 3 [Homo
sapiens]
Length = 481
Score = 74.7 bits (182), Expect = 6e-14
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 1 MFPREKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
M+ E+ W++SFAGCGFLG Y+VG CL EHAP L+ +A ++GASAGAL +++G+
Sbjct: 1 MYDAERGWSLSFAGCGFLGFYHVGATRCLSEHAPHLLRDARMLFGASAGALHCVGVLSGI 60
Query: 61 CL 62
L
Sbjct: 61 PL 62
Score = 34.3 bits (77), Expect = 0.089
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 61 CLVP-ERAARPVPSLLEWLPDVPEDIRWMKEQTGSICQYLVM 101
C +P E A V L+ WLPD+P+D+ W++ T + ++M
Sbjct: 358 CTLPVESAIAIVQRLVTWLPDMPDDVLWLQWVTSQVFTRVLM 399
>gi|20304127 patatin-like phospholipase domain containing 5 [Homo
sapiens]
Length = 429
Score = 65.9 bits (159), Expect = 3e-11
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 5 EKTWNISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTG 59
E WN+SF+G G+LG ++VG CLR+ AP L+ A IYG+S+GAL A ++V G
Sbjct: 7 EGRWNLSFSGAGYLGAHHVGATECLRQRAPRLLQGARRIYGSSSGALNAVSIVCG 61
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 74 LLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKL 107
L+ WLPDVP D+ WM+ ++ + R K +L
Sbjct: 362 LVVWLPDVPADLWWMQGLLRNMALEVFSRTKAQL 395
>gi|215422355 patatin-like phospholipase domain containing 4 [Homo
sapiens]
Length = 253
Score = 55.5 bits (132), Expect = 4e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 9 NISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVT 58
N+SFA CGFLG+Y++G AS L H LV + GASAG+L A+ L+T
Sbjct: 5 NLSFAACGFLGIYHLGAASALCRHGKKLVKDVKAFAGASAGSLVASVLLT 54
>gi|42415471 patatin-like phospholipase domain containing 4 [Homo
sapiens]
Length = 253
Score = 55.5 bits (132), Expect = 4e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 9 NISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVT 58
N+SFA CGFLG+Y++G AS L H LV + GASAG+L A+ L+T
Sbjct: 5 NLSFAACGFLGIYHLGAASALCRHGKKLVKDVKAFAGASAGSLVASVLLT 54
>gi|238776840 patatin-like phospholipase domain containing 1
isoform 3 [Homo sapiens]
Length = 532
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 9 NISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGV 60
+ISF+G GFL Y G LR+ AP ++ A G SAGA+ A + G+
Sbjct: 15 SISFSGSGFLSFYQAGAVDALRDLAPRMLETAHRFAGTSAGAVIAALAICGI 66
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 38.5 bits (88), Expect = 0.005
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 177 PPEALRMRAPADPAPAPADPASPQHQPAGPA---PLLSTPAP 215
PP A+ PA PAP PA +P+ +P PA P STP P
Sbjct: 520 PPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTP 561
Score = 32.0 bits (71), Expect = 0.44
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 184 RAPADPAPAPADPASPQHQPAGPAPLLSTPAP 215
R A+PA PA P++P PA P L + PAP
Sbjct: 503 RLKAEPAAPPAAPSTPAPPPAVPKELPAPPAP 534
Score = 31.6 bits (70), Expect = 0.58
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 185 APADPAPAPADPASPQHQPAGPA-PLLSTPAPEARP 219
AP+ PAP PA P+ PA PA P S P PE P
Sbjct: 514 APSTPAP---PPAVPKELPAPPAPPPASAPTPETEP 546
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 187 ADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGALG 225
A P P P P P A PAP P P+A GALG
Sbjct: 672 APPTPVPPSPPQPVTLGAVPAPQAPPPPPKAL-YPGALG 709
>gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase 6
[Homo sapiens]
Length = 311
Score = 38.5 bits (88), Expect = 0.005
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 165 LLLGLFCTNVA---FPPEALRMRAPADPAPAPADPASPQHQPAGPA-PLLSTPAPEARP 219
L+LG +C PP A RAPA PAPAP++P+S H+P P PL S P P
Sbjct: 6 LVLGAYCLCALPGRCPPAA---RAPA-PAPAPSEPSSSVHRPGAPGLPLASGPGRRRFP 60
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 37.4 bits (85), Expect = 0.011
Identities = 54/200 (27%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 60 VCLVPERAARPVPS------LLEWLPDVPEDIRWMKEQTGSICQYLVMRAKRKLGRHLPS 113
+C V E A P L P+ +D K+Q S Q + +++ L + PS
Sbjct: 1315 ICPVAEHPAPEAPESSPPLPLSSLPPEASQDSAPYKDQLSSKEQPSFLASQQLLSQAGPS 1374
Query: 114 RLPEQVELRRVQSLPSV-----------------PLSCAAYREALPGW---MRNNLSLGD 153
P S P V P S A + PG + + L
Sbjct: 1375 NPPGAPPAPLAPSSPPVTALPQDGAAPATSTMPEPASGTASQAGGPGTPQGLTSELETSQ 1434
Query: 154 ALAKWEECQ---RQLLLGLF-CTNVAFPPEALRMR---APADPAPAPADPASPQHQPAGP 206
LA+ E + L++GL CT PEA R AP +P P PA SP P
Sbjct: 1435 PLAETHEAPLAVQPLVVGLAPCTPA---PEAASTRDASAPREPLPPPAPEPSPHS--GTP 1489
Query: 207 APLLSTPAPEARPVIGALGL 226
P L PAP +GA+ L
Sbjct: 1490 QPALGQPAPLLPAAVGAVSL 1509
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 35.4 bits (80), Expect = 0.040
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 139 EALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEALRMRA-PADPAPAPADPA 197
E LPG +R + ++ + +E LL G F + + R P P AP P
Sbjct: 783 EKLPGSLRKGIPRTKSVGE-DEKLASLLEGRFPRSTSMQDPVREGRGIPPPPQTAPPPPP 841
Query: 198 SPQHQPAGPAPLLSTPAPEAR 218
+P + +GP P S P P R
Sbjct: 842 APYYFDSGPPPAFSPPPPPGR 862
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 35.0 bits (79), Expect = 0.052
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 176 FPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGA 223
FP L+ P P P P P SP +GP T +PE RP G+
Sbjct: 196 FPKTLLQAGRPGSPLPPPVKPLSPDGADSGP----GTSSPEVRPGSGS 239
>gi|148612811 ubiquitin specific protease 43 [Homo sapiens]
Length = 1123
Score = 35.0 bits (79), Expect = 0.052
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 189 PAPAPADPASP-QHQPAGPAPLLSTPAPEARPVIGALGL 226
P P PA P SP + +P GP P L PA + GA GL
Sbjct: 65 PGPVPAAPGSPGEERPPGPQPQLQLPAGDGARPPGAQGL 103
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 35.0 bits (79), Expect = 0.052
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 178 PEALRMRAPADPAP-APADPASPQHQ-PAGPAPLLSTPAPEARPVIGALGL 226
PEA + P +P P AP+ SP+ PA LS+P P + PV G LGL
Sbjct: 470 PEAAPILGPGEPGPQAPSRTPSPRSPAPARVKAELSSPTPGSSPVPGELGL 520
Score = 31.6 bits (70), Expect = 0.58
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 169 LFCTNVAFPPEALRMRAP-ADPAPAPADPASPQHQPAGPAPLLSTPAPEAR 218
L+C+ P +A R P A P PA A P QPA P S+P P AR
Sbjct: 598 LYCSGRRAPEDAPAARRPKAPPGPARAPPG----QPAEPDAPRSSPGPGAR 644
Score = 31.2 bits (69), Expect = 0.75
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 184 RAPAD--PAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
R PAD P+PAPA ASPQ GP L P P+ P
Sbjct: 893 RTPADRGPSPAPAPAASPQPGSRGPRDGLG-PEPQEPP 929
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.9 bits (76), Expect = 0.12
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGP---APLLSTPA 214
A P A AP P PAPA A P PAGP AP + PA
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPA 301
Score = 30.8 bits (68), Expect = 0.98
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPVIGA 223
A PP PA PAPA A A+P P PA L P A P A
Sbjct: 247 AAPPAPAAPSPPAAPAPA-APAAAPPPPPPAPATLARPPGHPAGPPTAA 294
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 187 ADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
A P PAPA PA +PAGPA L + P P
Sbjct: 148 AGPEPAPAGPA----KPAGPAALAARAGPGPGP 176
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 172 TNVAFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
T + PP PA AP+P +P A P P PA ARP
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARP 283
Score = 27.7 bits (60), Expect = 8.3
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 177 PPEALRMRAPADPAPAPA----DPASPQHQPAGPAPLLSTPAP 215
PP A + A APAPA PA QP GP + PAP
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP-GPGAAAAAPAP 340
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/39 (46%), Positives = 19/39 (48%)
Query: 177 PPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAP 215
P E RM AP P PA P +P A PAPL P P
Sbjct: 54 PVEEPRMEAPPLPLSPPAPPPAPPPPLATPAPLTVIPIP 92
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 177 PPEALRMRAPADPAPAPADPASPQH-QPAGPAPLLSTP---APEARPVIGALGL 226
PP L AP P P SPQ P P P + P AP ++GA GL
Sbjct: 76 PPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQPALVGAPGL 129
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 184 RAPADPAP---APADPASPQHQPAGPAPLLSTPAPEARP 219
+APA PAP APA PA Q PA PAP A A P
Sbjct: 451 KAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASP 489
Score = 32.0 bits (71), Expect = 0.44
Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 177 PPEALR--MRAPADPAP---APADPASPQHQPAGPAPLLSTPA 214
PP L +APA AP APA PA Q PA PAP PA
Sbjct: 432 PPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPA 474
Score = 30.8 bits (68), Expect = 0.98
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 184 RAPADPAP---APADPASPQHQPAGPAPLLSTPAPEAR 218
+APA PAP A A ASP+ A PAP TP P +
Sbjct: 471 KAPAIPAPSRKASAASASPRKASAVPAPPQKTPPPSQK 508
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
A P + + APA PAPAPA A+P P A L PAP P
Sbjct: 134 ASTPPPVPVLAPA-PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAP 177
Score = 32.0 bits (71), Expect = 0.44
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 178 PEALRMRAPAD-PAPAPADPASPQHQPA-GPAPL-----LSTPAPEARP 219
P A+ + APA PAPAPA +P PA PAP PAP+A P
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAP 209
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 174 VAFPPEALRMRAPADPAPAPADPASPQHQP-AGPAPLLSTPAPEARP 219
VA P A A PAPAPA +P P A PAP PAP P
Sbjct: 154 VAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP---APAPAPAP 197
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
A P + + APA PAPAPA A+P P A L PAP P
Sbjct: 134 ASTPPPVPVLAPA-PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAP 177
Score = 32.0 bits (71), Expect = 0.44
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 178 PEALRMRAPAD-PAPAPADPASPQHQPA-GPAPL-----LSTPAPEARP 219
P A+ + APA PAPAPA +P PA PAP PAP+A P
Sbjct: 161 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAP 209
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 174 VAFPPEALRMRAPADPAPAPADPASPQHQP-AGPAPLLSTPAPEARP 219
VA P A A PAPAPA +P P A PAP PAP P
Sbjct: 154 VAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP---APAPAPAP 197
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
A P + + APA PAPAPA A+P P A L PAP P
Sbjct: 145 ASTPPPVPVLAPA-PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAP 188
Score = 32.0 bits (71), Expect = 0.44
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 178 PEALRMRAPAD-PAPAPADPASPQHQPA-GPAPL-----LSTPAPEARP 219
P A+ + APA PAPAPA +P PA PAP PAP+A P
Sbjct: 172 PVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAP 220
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 174 VAFPPEALRMRAPADPAPAPADPASPQHQP-AGPAPLLSTPAPEARP 219
VA P A A PAPAPA +P P A PAP PAP P
Sbjct: 165 VAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAP---APAPAPAP 208
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 177 PPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAP 215
PPEA PA P P P P P QP P P L PAP
Sbjct: 1403 PPEA----PPAQPPPPPPPPPPPPQQPLPPPPNLE-PAP 1436
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 33.5 bits (75), Expect = 0.15
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 112 PSRLPEQVELRRVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFC 171
P+ LP V +PS P S A + P + L Q L + C
Sbjct: 659 PAPLPAAV-------VPSTPTSAPAPTQPAPTPTSGPIGL--------RILAQQPLSVTC 703
Query: 172 TNVAFP-PEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
++A P P A+ + +PA PAPAP+ + PA PAP A P
Sbjct: 704 FSLALPSPPAVAVASPA-PAPAPSPAPARAQAPASARDPAPAPAPVAGP 751
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 175 AFPPEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPV 220
A PP +APA P+PAPA A P+P +S PAP A P+
Sbjct: 483 ALPPALAADQAPA-PSPAPAPTV------AEPSPPVSAPAPAAAPI 521
>gi|239754211 PREDICTED: hypothetical protein XP_002345911 [Homo
sapiens]
Length = 131
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 180 ALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARP 219
ALR A P A P++P P PAP + PAP+ RP
Sbjct: 68 ALRPSAVPGPLCPEATPSAPPTSPLHPAPPSARPAPKPRP 107
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 178 PEALRMRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEARPV 220
P + +R P PA PA P +P+ P PLL P + V
Sbjct: 1126 PPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTV 1168
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 178 PEALRMRAPADPAPAPADPASPQHQPAGPAPLLST 212
PE R P P P PA+PQ P GP PLLS+
Sbjct: 303 PEQYRELRPGSPYGVPPSPAAPQSLP-GPQPLLSS 336
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 178 PEALRMRAPADPAPAPADPASPQHQPAGPAPLLST 212
PE R P P P PA+PQ P GP PLLS+
Sbjct: 308 PEQYRELRPGSPYGVPPSPAAPQSLP-GPQPLLSS 341
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 33.1 bits (74), Expect = 0.20
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 123 RVQSLPSVPLSCAAYREALPGWMRNNLSLGDALAKWEECQRQLLLGLFCTNVAFPPEALR 182
R+ +PL + L W + + C R L LG A PP
Sbjct: 133 RIGDRDPIPLPVPSLLPRLRAWRTGKTVSPQSNSSRPTCARHLTLGTGDGGPAPPPAPSS 192
Query: 183 MRAPADPAPAPADPASPQHQPAGPAPLLSTPAPEA 217
+ P+P+ + P SP P PAP PAP A
Sbjct: 193 ASSSPSPSPSSSSP-SPPPPPPPPAP----PAPPA 222
>gi|9951913 G protein-coupled receptor 162 isoform 2 [Homo sapiens]
Length = 588
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 188 DPAPAPADPASPQHQPAGPAPL------LSTPAPEARPVIGALGL 226
D P P+ ASP H P P PL LS +PE+R V LGL
Sbjct: 510 DETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGL 554
>gi|7656843 G protein-coupled receptor 162 isoform 1 [Homo sapiens]
Length = 304
Score = 33.1 bits (74), Expect = 0.20
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 188 DPAPAPADPASPQHQPAGPAPL------LSTPAPEARPVIGALGL 226
D P P+ ASP H P P PL LS +PE+R V LGL
Sbjct: 226 DETPLPSPTASPGHSPRRPRPLGLSPRRLSLGSPESRAVGLPLGL 270
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,923,405
Number of Sequences: 37866
Number of extensions: 596070
Number of successful extensions: 7379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 5846
Number of HSP's gapped (non-prelim): 1551
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.