Search of human proteins with 239755222

Search of human proteins with 239755222

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755222 PREDICTED: hypothetical protein [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755222 PREDICTED: hypothetical protein [Homo sapiens]           281   1e-76
gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo ...   281   1e-76
gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo ...   281   1e-76
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]            31   0.27 
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom...    31   0.27 
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    31   0.36 
gi|169162399 PREDICTED: hypothetical protein [Homo sapiens]            30   0.61 
gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]              30   0.79 
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            29   1.0  
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            29   1.0  
gi|14149724 mesoderm posterior 1 [Homo sapiens]                        29   1.0  
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ...    28   2.3  
gi|157384986 transducin-like enhancer protein 3 isoform b [Homo ...    28   2.3  
gi|157384984 transducin-like enhancer protein 3 isoform c [Homo ...    28   2.3  
gi|157384982 transducin-like enhancer protein 3 isoform a [Homo ...    28   2.3  
gi|163965366 nascent polypeptide-associated complex alpha subuni...    28   2.3  
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]            28   3.0  
gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo ...    28   3.0  
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            27   3.9  
gi|94400919 WD repeat domain 90 [Homo sapiens]                         27   3.9  
gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo...    27   5.1  
gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Hom...    27   5.1  
gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Hom...    27   5.1  
gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Hom...    27   5.1  
gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Hom...    27   5.1  
gi|41281612 zinc finger protein 828 [Homo sapiens]                     27   5.1  
gi|13375913 transmembrane protein 149 [Homo sapiens]                   27   5.1  
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          27   6.7  
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    27   6.7  
gi|19923345 RNA binding motif protein 12 [Homo sapiens]                27   6.7  

>gi|239755222 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  281 bits (719), Expect = 1e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60
           MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW
Sbjct: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60

Query: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120
           LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG
Sbjct: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120

Query: 121 RGRKFLGAVRGFAADI 136
           RGRKFLGAVRGFAADI
Sbjct: 121 RGRKFLGAVRGFAADI 136


>gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo
           sapiens]
          Length = 136

 Score =  281 bits (719), Expect = 1e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60
           MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW
Sbjct: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60

Query: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120
           LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG
Sbjct: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120

Query: 121 RGRKFLGAVRGFAADI 136
           RGRKFLGAVRGFAADI
Sbjct: 121 RGRKFLGAVRGFAADI 136


>gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo
           sapiens]
          Length = 136

 Score =  281 bits (719), Expect = 1e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60
           MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW
Sbjct: 1   MGTLTIMVTTARKQQLQQKRKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTW 60

Query: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120
           LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG
Sbjct: 61  LPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFSRADQNFANGVGGKLG 120

Query: 121 RGRKFLGAVRGFAADI 136
           RGRKFLGAVRGFAADI
Sbjct: 121 RGRKFLGAVRGFAADI 136


>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 23/99 (23%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRW 94
           PA   V P HP         ISL+ +     AA LP  G   G     LR      RR  
Sbjct: 70  PAKASVQPRHPARY------ISLLRY--SEAAAPLPRGGGGRGGQDISLRA-----RRGG 116

Query: 95  RRGGDRGAQFSRADQNFANGVGGK----------LGRGR 123
            R GDRGA+ +R     A G+G            LGRGR
Sbjct: 117 TRTGDRGAELTRPQSLLARGLGPNWLAAAAANQGLGRGR 155


>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
           sapiens]
          Length = 146

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 45  PPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLR 84
           PPPA     ++    W   SP AH+ W G  P H++P LR
Sbjct: 87  PPPAPALAASVGK-RWA--SPQAHIEWLGNPPPHSSPTLR 123


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 30.8 bits (68), Expect = 0.36
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 46  PPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGAQFS 105
           PP  GG           R PA+H+   GQLP ++ PQL R    +  + +    R AQF 
Sbjct: 901 PPMYGG-----------RGPASHMQHPGQLPVYSRPQLLRQQELYALQQQ----RAAQFQ 945

Query: 106 RADQN 110
           R  ++
Sbjct: 946 RKPED 950


>gi|169162399 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 392

 Score = 30.0 bits (66), Expect = 0.61
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRW 94
           PA   V P HP         ISL+ +     AA LP  G   G     LR      RR  
Sbjct: 70  PAKASVQPRHPARY------ISLLRY--SEAAAPLPRGGGGRGGQDISLRA-----RRGG 116

Query: 95  RRGGDRGAQFSRADQNFANGVG 116
            R GDRGA+ +R     A G+G
Sbjct: 117 TRTGDRGAELTRPQSLLARGLG 138


>gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]
          Length = 921

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 36  AAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGH 78
           A  + A  HP   +  G+AI +   LP  P AHL W  ++P H
Sbjct: 854 ALARAAREHPSLELLQGVAIQMCWKLPLLPYAHL-WTPRMPSH 895


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 31  GVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQ---------LPGHATP 81
           G   PAA   A   P   +    A+SL   L RSP    P  G          L G   P
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303

Query: 82  QLRRFPAQFRRRWRRG-GDRGAQFSRADQNFANGVGGKLGRG---RKFLGAVRGFA 133
            L  FP + RRR  R     G    R+       VG +  RG   R+  G  +G A
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCA 359


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 31  GVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQ---------LPGHATP 81
           G   PAA   A   P   +    A+SL   L RSP    P  G          L G   P
Sbjct: 244 GAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSRAP 303

Query: 82  QLRRFPAQFRRRWRRG-GDRGAQFSRADQNFANGVGGKLGRG---RKFLGAVRGFA 133
            L  FP + RRR  R     G    R+       VG +  RG   R+  G  +G A
Sbjct: 304 SLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCA 359


>gi|14149724 mesoderm posterior 1 [Homo sapiens]
          Length = 268

 Score = 29.3 bits (64), Expect = 1.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLP 70
           P    + P  P P + G +   L TW+P SP   LP
Sbjct: 229 PEGQAMEPSPPSPLLPGDVLALLETWMPLSPLEWLP 264


>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
          sapiens]
          Length = 152

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 41 APVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHAT-PQLRR 85
          +P  P P  GGG    L+  L R+P A  PW     G A  P+ RR
Sbjct: 19 SPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRR 64


>gi|157384986 transducin-like enhancer protein 3 isoform b [Homo
           sapiens]
          Length = 769

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAA 67
           PA  +V+P H PP  G   A SL    P SPA+
Sbjct: 257 PATPRVSPAHSPPENGLDKARSLKKDAPTSPAS 289


>gi|157384984 transducin-like enhancer protein 3 isoform c [Homo
           sapiens]
          Length = 760

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAA 67
           PA  +V+P H PP  G   A SL    P SPA+
Sbjct: 257 PATPRVSPAHSPPENGLDKARSLKKDAPTSPAS 289


>gi|157384982 transducin-like enhancer protein 3 isoform a [Homo
           sapiens]
          Length = 772

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAA 67
           PA  +V+P H PP  G   A SL    P SPA+
Sbjct: 257 PATPRVSPAHSPPENGLDKARSLKKDAPTSPAS 289


>gi|163965366 nascent polypeptide-associated complex alpha subunit
           isoform a [Homo sapiens]
          Length = 2078

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 35  PAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFP 87
           P      P   PP+  GG A     W P  PAA  P      G ATP  +  P
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPP--SPKGGPATPSPKGAP 986



 Score = 28.1 bits (61), Expect = 2.3
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 34   FPAAVKVAPVHPPPAVGGGIAIS-LVTWLPRSPAAHLPWRGQLPGHATPQLRRFP 87
            FP      P   PP+  G  A + L    P +PAA LP      G ATP L+  P
Sbjct: 1028 FPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLP--SPKGGPATPSLKGAP 1080


>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 21  KTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRS---PA-AHLPWRGQLP 76
           + L S  LS  +   A+++  P  PP  V  G   S V         PA A   WRG L 
Sbjct: 14  RPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR 73

Query: 77  GHATPQLRRFPAQFRRRWRRGGDRGAQ----FSRADQNFANGVGGKLGRGRKFLGAVRGF 132
           G   P   R  +  RRR    G RG Q       ++++   G+ G  GR    L   RG 
Sbjct: 74  GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR----LAPARGG 129

Query: 133 AA 134
           AA
Sbjct: 130 AA 131


>gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
           sapiens]
          Length = 285

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 21  KTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRS---PA-AHLPWRGQLP 76
           + L S  LS  +   A+++  P  PP  V  G   S V         PA A   WRG L 
Sbjct: 14  RPLPSPVLSAAMVSRASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR 73

Query: 77  GHATPQLRRFPAQFRRRWRRGGDRGAQ----FSRADQNFANGVGGKLGRGRKFLGAVRGF 132
           G   P   R  +  RRR    G RG Q       ++++   G+ G  GR    L   RG 
Sbjct: 74  GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR----LAPARGG 129

Query: 133 AA 134
           AA
Sbjct: 130 AA 131


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 62  PRSPAAHLP-WRGQLPGHATPQLRRFPAQFRRRWR-----RGGDRGAQFSRADQNFANGV 115
           P  P+   P  RG+ P    PQL R P   RR  R     +GGDR A          +G 
Sbjct: 118 PLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGP 177

Query: 116 GGKLG----RGRKF 125
            G  G    R RKF
Sbjct: 178 PGASGVGSERDRKF 191


>gi|94400919 WD repeat domain 90 [Homo sapiens]
          Length = 1748

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 20   RKTLSSDCLSFGVNFPAAVKVAP-----VHPPPAVGGGIAISLVTWLPRSPAAHLPWR 72
            R T  + C +F    PA V  +P       PPPA GG + +  V     +  A++ WR
Sbjct: 1073 RTTYLASCKAFT---PARVSCSPHSAKGTCPPPASGGWLRLKAVVGYSGNGRANMVWR 1127


>gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 1429

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 62  PRSPAAHLPWRGQLPGHATP-----QLRRFPAQFRRRWR 95
           P S A  +PW  +LP   T       LR+ P    RRWR
Sbjct: 111 PTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSGRRWR 149


>gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Homo
           sapiens]
          Length = 1399

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 62  PRSPAAHLPWRGQLPGHATP-----QLRRFPAQFRRRWR 95
           P S A  +PW  +LP   T       LR+ P    RRWR
Sbjct: 111 PTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSGRRWR 149


>gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Homo
           sapiens]
          Length = 1375

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 62  PRSPAAHLPWRGQLPGHATP-----QLRRFPAQFRRRWR 95
           P S A  +PW  +LP   T       LR+ P    RRWR
Sbjct: 111 PTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSGRRWR 149


>gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Homo
           sapiens]
          Length = 1443

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 62  PRSPAAHLPWRGQLPGHATP-----QLRRFPAQFRRRWR 95
           P S A  +PW  +LP   T       LR+ P    RRWR
Sbjct: 111 PTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSGRRWR 149


>gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 1473

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 62  PRSPAAHLPWRGQLPGHATP-----QLRRFPAQFRRRWR 95
           P S A  +PW  +LP   T       LR+ P    RRWR
Sbjct: 111 PTSTAVLMPWIHELPAGCTQGSERRVLRQLPDTSGRRWR 149


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 34  FPAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFPA 88
           FPA V   P  P PAV  G      +W P  P +  PW+      + P     PA
Sbjct: 293 FPA-VSPEPRRPAPAVSPG------SWKPGPPGSPRPWKSNPSASSGPWKPAKPA 340


>gi|13375913 transmembrane protein 149 [Homo sapiens]
          Length = 355

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 21/69 (30%), Positives = 23/69 (33%)

Query: 20  RKTLSSDCLSFGVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHA 79
           RK  S  C   G    +      V P PA GGG         P     H P     PG  
Sbjct: 74  RKCSSGQCNPDGAELCSPCGGGAVTPTPAAGGGRTPWRCRERPVPAKGHCPLTPGNPGAP 133

Query: 80  TPQLRRFPA 88
           + Q R  PA
Sbjct: 134 SSQERSSPA 142


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 43  VHPPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLRRFPAQFRRRWRRGGDRGA 102
           +HP P  G    ++L    P    A      Q PG A P     PA   +R R GG R +
Sbjct: 281 LHPGPPAGSPPPLTLPP-TPSPATAVTAASAQPPGPAPPITLEPPAPGLKRGREGG-RAS 338

Query: 103 QFSRADQNFANGV-----GGKLGRG 122
              R    F +G+     GG  G G
Sbjct: 339 TRDRKMLKFISGIFTKSTGGPPGSG 363


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           4 [Homo sapiens]
          Length = 1039

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 62  PRSPAAHLPWRGQLPG---HATP----QLRRFPAQFRRRWRRGGDRGAQFSRADQNFANG 114
           PR+PA   PW    PG   H  P    QLR  P   R   RR G   A   R        
Sbjct: 538 PRAPAPRAPW-PPFPGVFLHPRPLPRVQLRAPPRPPRPHGRRTGGPQATQPRPPARAQAT 596

Query: 115 VGGKLGRGR 123
            GG+ G+ R
Sbjct: 597 QGGREGQAR 605


>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
          Length = 932

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 21/110 (19%)

Query: 29  SFGVNFPAAVKVAPVHPPPAVGGGIAISLVTWLPRSPAAHLPWRG-QLPGH-ATPQLRRF 86
           +F  NF  +    P  PPP +GGG        +P    + LP  G  +PG    P     
Sbjct: 722 NFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSG 781

Query: 87  PAQFRRRWRRGGDRGAQFSRADQNFANGVGG-----KLGRGRKFLGAVRG 131
           P+ F      GG          QNF NG G        G G   LG+  G
Sbjct: 782 PSGF------GG--------GPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,824,586
Number of Sequences: 37866
Number of extensions: 293095
Number of successful extensions: 1161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 61
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.