Guide to the Human Genome
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Name: LOC100289723 Sequence: fasta or formatted (152aa) NCBI GI: 239747205
Description:

PREDICTED: hypothetical protein XP_002346408

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.8         27           2
 C cysteine            2.0          3           1
 D aspartate           5.9          9           3
 E glutamate           2.0          3           2
 F phenylalanine       2.0          3           1
 G glycine            15.8         24           3
 H histidine           0.0          0           0
 I isoleucine          1.3          2           1
 K lysine              2.0          3           1
 L leucine             8.6         13           3
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline             7.2         11           1
 Q glutamine           3.9          6           1
 R arginine           13.2         20           2
 S serine              3.3          5           1
 T threonine           2.0          3           1
 V valine              9.9         15           2
 W tryptophan          2.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346408 
LOC100293554          0.543   PREDICTED: hypothetical protein 
LOC100288202          0.543   PREDICTED: hypothetical protein XP_002342060 
ARTN                  0.028   neurotrophic factor artemin isoform 2 
ARTN                  0.028   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.028   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.028   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.028   neurotrophic factor artemin isoform 3 precursor [Ho...
LOC123855             0.028   PREDICTED: similar to hCG2042536 
LOC123855             0.028   PREDICTED: similar to hCG2042536 
LOC100134240          0.025   PREDICTED: hypothetical protein 
LOC339742             0.025   PREDICTED: hypothetical protein 
LOC100133636          0.025   PREDICTED: similar to hCG1806822 
C9orf4                0.025   hypothetical protein LOC23732 
LOC100292143          0.025   PREDICTED: hypothetical protein 
LOC100133885          0.025   PREDICTED: hypothetical protein 
LOC100133638          0.025   PREDICTED: hypothetical protein 
LOC100132261          0.025   PREDICTED: similar to hCG2023245 
TCF23                 0.025   transcription factor 23 
SAMD11                0.025   sterile alpha motif domain containing 11 
LOC339742             0.021   PREDICTED: hypothetical protein 
BSN                   0.021   bassoon protein 
SRF                   0.021   serum response factor (c-fos serum response element-b...
LOC388079             0.021   PREDICTED: similar to hCG2042704 
LOC727804             0.021   PREDICTED: hypothetical protein 
PRDM15                0.021   PR domain containing 15 isoform 1 
LOC100134365          0.018   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
C17orf96              0.018   hypothetical protein LOC100170841 
GNAS                  0.018   GNAS complex locus XLas 
LOC651986             0.018   PREDICTED: similar to forkhead box L2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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