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Search of human proteins with 239755109
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo ... 230 2e-61
gi|239749625 PREDICTED: hypothetical protein XP_002347104 [Homo ... 172 5e-44
gi|239743897 PREDICTED: hypothetical protein XP_002342987 [Homo ... 172 5e-44
gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens] 32 0.14
gi|110349799 testis-specific protein kinase 2 [Homo sapiens] 30 0.31
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 29 0.92
gi|10801345 eukaryotic translation initiation factor 3, subunit ... 28 2.0
gi|60499001 pipecolic acid oxidase [Homo sapiens] 27 2.7
gi|209969680 Fzr1 protein isoform 1 [Homo sapiens] 27 2.7
gi|209969678 Fzr1 protein isoform 3 [Homo sapiens] 27 2.7
gi|33620742 Fzr1 protein isoform 2 [Homo sapiens] 27 2.7
gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo ... 27 3.5
gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo ... 27 3.5
gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo ... 27 3.5
gi|11321636 tryptase delta 1 [Homo sapiens] 26 5.9
gi|4826798 potassium inwardly-rectifying channel J4 [Homo sapiens] 26 5.9
gi|23110984 potassium inwardly-rectifying channel J4 [Homo sapiens] 26 5.9
>gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo
sapiens]
Length = 115
Score = 230 bits (587), Expect = 2e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MEWLFLGSLLQEVPAHLALLKAVPNLPLSQSVVASGGGQIFESSQEDQELLLAMQILDLL 60
MEWLFLGSLLQEVPAHLALLKAVPNLPLSQSVVASGGGQIFESSQEDQELLLAMQILDLL
Sbjct: 1 MEWLFLGSLLQEVPAHLALLKAVPNLPLSQSVVASGGGQIFESSQEDQELLLAMQILDLL 60
Query: 61 LFAHFCLFSEALERRFPPQILAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 115
LFAHFCLFSEALERRFPPQILAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 61 LFAHFCLFSEALERRFPPQILAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 115
>gi|239749625 PREDICTED: hypothetical protein XP_002347104 [Homo
sapiens]
Length = 95
Score = 172 bits (436), Expect = 5e-44
Identities = 85/87 (97%), Positives = 86/87 (98%)
Query: 29 SQSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 88
+ SVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS
Sbjct: 9 ASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 68
Query: 89 RPRSTGIRTPRRLPWEIRLFRAGGRSC 115
RPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 69 RPRSTGIRTPRRLPWEIRLFRAGGRSC 95
>gi|239743897 PREDICTED: hypothetical protein XP_002342987 [Homo
sapiens]
Length = 95
Score = 172 bits (436), Expect = 5e-44
Identities = 85/87 (97%), Positives = 86/87 (98%)
Query: 29 SQSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 88
+ SVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS
Sbjct: 9 ASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 68
Query: 89 RPRSTGIRTPRRLPWEIRLFRAGGRSC 115
RPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 69 RPRSTGIRTPRRLPWEIRLFRAGGRSC 95
>gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo
sapiens]
Length = 294
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 2 EWLFLGSLLQEVPAHLAL---LKAVPNLPLSQSVVASGGGQIFESSQED 47
EW FLGSLL V L L V L V+A+ GG +FE QE+
Sbjct: 3 EWAFLGSLLDAVQLQSPLVGRLWLVVMLIFRILVLATVGGAVFEDEQEE 51
>gi|110349799 testis-specific protein kinase 2 [Homo sapiens]
Length = 571
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 75 RFPPQILAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGR 113
R PP+ ++V D RPR RTP+ P+ R GG+
Sbjct: 374 RKPPRTVSVLDPYYRPRDGAARTPKVNPFSARQDLMGGK 412
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 28.9 bits (63), Expect = 0.92
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 43/135 (31%)
Query: 14 PAHLALLKAVPNLPLSQSVVASGGGQIFESSQEDQEL----------------------- 50
P H+A + L L + + A G GQ++ ++ + QE+
Sbjct: 116 PVHVAFER----LELKELIGAGGFGQVYRATWQGQEVAVKAARQDPEQDAAAAAESVRRE 171
Query: 51 --LLAM----QILDL----LLFAHFCLFSEALERRFPPQILAVCDASSRPRSTGIRTPRR 100
L AM I++L L H CL E + LA +A+ PR+ G R RR
Sbjct: 172 ARLFAMLRHPNIIELRGVCLQQPHLCLVLEFARGGALNRALAAANAAPDPRAPGPRRARR 231
Query: 101 LP------WEIRLFR 109
+P W +++ R
Sbjct: 232 IPPHVLVNWAVQIAR 246
>gi|10801345 eukaryotic translation initiation factor 3, subunit 12
[Homo sapiens]
Length = 218
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 19 LLKAVPNLPLSQSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALE 73
LLKA+ NLP + + I ++ QE++ + + + DLL HF F +AL+
Sbjct: 70 LLKALTNLPHTDFTLCKC--MIDQAHQEERPIRQILYLGDLLETCHFQAFWQALD 122
>gi|60499001 pipecolic acid oxidase [Homo sapiens]
Length = 390
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 38 GQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFP 77
G + +E+QEL L H CL SE L++RFP
Sbjct: 91 GLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFP 130
>gi|209969680 Fzr1 protein isoform 1 [Homo sapiens]
Length = 496
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 8 SLLQEVPAHLALLKAVPNLPLSQSVVASGGG 38
S +Q+ HLA +KA+ P ++ASGGG
Sbjct: 346 SPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376
>gi|209969678 Fzr1 protein isoform 3 [Homo sapiens]
Length = 404
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 8 SLLQEVPAHLALLKAVPNLPLSQSVVASGGG 38
S +Q+ HLA +KA+ P ++ASGGG
Sbjct: 257 SPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 287
>gi|33620742 Fzr1 protein isoform 2 [Homo sapiens]
Length = 493
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 8 SLLQEVPAHLALLKAVPNLPLSQSVVASGGG 38
S +Q+ HLA +KA+ P ++ASGGG
Sbjct: 346 SPVQQYTEHLAAVKAIAWSPHQHGLLASGGG 376
>gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo
sapiens]
Length = 105
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 45 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 82
Q+ QELL Q+ DLLL H L + E P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50
>gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo
sapiens]
Length = 105
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 45 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 82
Q+ QELL Q+ DLLL H L + E P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50
>gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo
sapiens]
Length = 105
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 45 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 82
Q+ QELL Q+ DLLL H L + E P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50
>gi|11321636 tryptase delta 1 [Homo sapiens]
Length = 242
Score = 26.2 bits (56), Expect = 5.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 50 LLLAMQILDLLLFAHFCLFSEALERRFPPQIL---AVCDASSRPRSTGIRTPRRLPWEIR 106
LLLA Q+L LLL A L S A P Q L + PRS + PW++
Sbjct: 2 LLLAPQMLSLLLLALPVLASPAYVAPAPGQALQQTGIVGGQEAPRS-------KWPWQVS 54
Query: 107 L 107
L
Sbjct: 55 L 55
>gi|4826798 potassium inwardly-rectifying channel J4 [Homo sapiens]
Length = 445
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 MEWLFLGSLLQEVPAHLALLKAVPNLPLSQSVVASGGG 38
+ WLF G L + L+A P +P + A GGG
Sbjct: 68 VSWLFFGLLFWCIAFFHGDLEASPGVPAAGGPAAGGGG 105
>gi|23110984 potassium inwardly-rectifying channel J4 [Homo sapiens]
Length = 445
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 MEWLFLGSLLQEVPAHLALLKAVPNLPLSQSVVASGGG 38
+ WLF G L + L+A P +P + A GGG
Sbjct: 68 VSWLFFGLLFWCIAFFHGDLEASPGVPAAGGPAAGGGG 105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,510,338
Number of Sequences: 37866
Number of extensions: 166113
Number of successful extensions: 561
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 18
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.