Guide to the Human Genome
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Name: LOC100292027 Sequence: fasta or formatted (115aa) NCBI GI: 239755109
Description:

PREDICTED: hypothetical protein XP_002346219

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         10           1
 C cysteine            2.6          3           1
 D aspartate           2.6          3           1
 E glutamate           7.0          8           1
 F phenylalanine       6.1          7           1
 G glycine             6.1          7           3
 H histidine           1.7          2           1
 I isoleucine          4.3          5           1
 K lysine              0.9          1           1
 L leucine            18.3         21           3
 M methionine          1.7          2           1
 N asparagine          0.9          1           1
 P proline             7.0          8           2
 Q glutamine           6.1          7           1
 R arginine            8.7         10           2
 S serine              9.6         11           2
 T threonine           1.7          2           1
 V valine              4.3          5           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346219 
LOC100289889          0.717   PREDICTED: hypothetical protein XP_002347104 
LOC100287858          0.717   PREDICTED: hypothetical protein XP_002342987 
GJD3                  0.034   gap junction protein, delta 3, 31.9kDa 
TESK2                 0.024   testis-specific protein kinase 2 
KIAA1804              0.020   mixed lineage kinase 4 
EIF3K                 0.015   eukaryotic translation initiation factor 3, subunit ...
PIPOX                 0.010   pipecolic acid oxidase 
FZR1                  0.010   Fzr1 protein isoform 1 
FZR1                  0.010   Fzr1 protein isoform 3 
FZR1                  0.010   Fzr1 protein isoform 2 
LOC100291800          0.010   PREDICTED: hypothetical protein XP_002345937 
LOC100290644          0.010   PREDICTED: hypothetical protein XP_002346805 
LOC100289039          0.010   PREDICTED: hypothetical protein XP_002342675 
TPSD1                 0.005   tryptase delta 1 
KCNJ4                 0.005   potassium inwardly-rectifying channel J4 
KCNJ4                 0.005   potassium inwardly-rectifying channel J4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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