Guide to the Human Genome
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Name: LOC100287858 Sequence: fasta or formatted (95aa) NCBI GI: 239743897
Description:

PREDICTED: hypothetical protein XP_002342987

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5          9           2
 C cysteine            3.2          3           1
 D aspartate           4.2          4           1
 E glutamate           6.3          6           1
 F phenylalanine       6.3          6           1
 G glycine             7.4          7           3
 H histidine           1.1          1           1
 I isoleucine          6.3          6           1
 K lysine              0.0          0           0
 L leucine            13.7         13           3
 M methionine          2.1          2           1
 N asparagine          0.0          0           0
 P proline             5.3          5           2
 Q glutamine           5.3          5           1
 R arginine           11.6         11           2
 S serine             11.6         11           2
 T threonine           2.1          2           1
 V valine              3.2          3           2
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342987 
LOC100289889          1.000   PREDICTED: hypothetical protein XP_002347104 
LOC100292027          0.896   PREDICTED: hypothetical protein XP_002346219 
TESK2                 0.030   testis-specific protein kinase 2 
PIPOX                 0.012   pipecolic acid oxidase 
KIAA1804              0.012   mixed lineage kinase 4 
LOC100291800          0.012   PREDICTED: hypothetical protein XP_002345937 
LOC100290644          0.012   PREDICTED: hypothetical protein XP_002346805 
LOC100289039          0.012   PREDICTED: hypothetical protein XP_002342675 
TPSD1                 0.006   tryptase delta 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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