Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754991
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(209 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sap... 436 e-123
gi|120587019 zinc finger protein 318 [Homo sapiens] 46 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 4e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 43 2e-04
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 43 2e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 43 2e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 43 2e-04
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 42 3e-04
gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo sap... 41 8e-04
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 41 8e-04
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.001
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.001
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 40 0.001
gi|40255047 pleckstrin homology domain containing, family H (wit... 40 0.002
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 40 0.002
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 40 0.002
gi|41352718 deltex homolog 1 [Homo sapiens] 39 0.002
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 39 0.003
gi|118402590 myosin XV [Homo sapiens] 39 0.004
gi|123173757 RAVER1 [Homo sapiens] 39 0.004
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 39 0.004
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 38 0.005
gi|239752467 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo ... 38 0.005
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 38 0.005
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.007
>gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MTTLHLIHHCTNHFAILSYKVDVGHTESEASPQHPTNFVDTEGLESDCWAESEFTSPEDL 60
MTTLHLIHHCTNHFAILSYKVDVGHTESEASPQHPTNFVDTEGLESDCWAESEFTSPEDL
Sbjct: 1 MTTLHLIHHCTNHFAILSYKVDVGHTESEASPQHPTNFVDTEGLESDCWAESEFTSPEDL 60
Query: 61 PILTHGRYNAVWLCPFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWR 120
PILTHGRYNAVWLCPFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWR
Sbjct: 61 PILTHGRYNAVWLCPFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWR 120
Query: 121 LSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA 180
LSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA
Sbjct: 121 LSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA 180
Query: 181 RASHPPGPVGVFGASSQGLAAAGGPERRF 209
RASHPPGPVGVFGASSQGLAAAGGPERRF
Sbjct: 181 RASHPPGPVGVFGASSQGLAAAGGPERRF 209
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 45.8 bits (107), Expect = 3e-05
Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 117 SGWRLSTPAVGPR-PAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSP 175
SG TPA PR P+ R +SP+ PR G+R +P SP A RGSP
Sbjct: 46 SGSSSRTPARRPRSPSGHRGRRASPSPPR-GRRVSP--------------SPPRARRGSP 90
Query: 176 ARPGARASHPPGPVGVFGASSQGLAAA 202
+ P R PPGP G F SS+G + A
Sbjct: 91 SPPRGRRLFPPGPAG-FRGSSRGESRA 116
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.1 bits (105), Expect = 4e-05
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 89 SLTNMTPHSIVTLAHPFAGS------PLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAV 142
SL N P +++ L P A P + +P P PAA AAP P
Sbjct: 216 SLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP- 274
Query: 143 PREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPP--GPVGVFGASSQGLA 200
P A PP P+G A+ + P A + + A A P GP GV G G A
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Query: 201 AA 202
AA
Sbjct: 335 AA 336
Score = 36.6 bits (83), Expect = 0.016
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 124 PAVGPRPAARRAAP--SSPAVPREGQR-------AAPPPRPSGTFAASARLSPGLAGRGS 174
PA RP A P ++PAVP AAP P P+ A PG +
Sbjct: 277 PATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAA 336
Query: 175 PARPGARASHPPGPVGVFGASSQGLAAAG 203
PG +A P V ++Q LAA+G
Sbjct: 337 APAPGVKAESPKRVVQAAPPAAQTLAASG 365
Score = 33.5 bits (75), Expect = 0.13
Identities = 34/102 (33%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 121 LSTPAVGPRPAARRAAPSSPAVPREG-QRAAPPPRPSGTFAASARLSPGLAG-------- 171
L V PA AA + PA P EG AAP P P+G R PG G
Sbjct: 58 LGNHVVSGSPAG--AAGAGPAAPAEGAPGAAPEPPPAG------RARPGGGGPQRPGPPS 109
Query: 172 ------RGSPARPGARASHPP-GPVGVFGASSQGLAAAGGPE 206
PA P A+ PP G G A A GPE
Sbjct: 110 PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPE 151
Score = 32.0 bits (71), Expect = 0.39
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 127 GPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA---RAS 183
GP P A + P P EG + P P+ A +A P AG PA P A RA
Sbjct: 118 GPAPPAAKLRP-----PPEGSAGSCAPVPAAA-AVAAGPEPAPAGPAKPAGPAALAARAG 171
Query: 184 HPPGP 188
PGP
Sbjct: 172 PGPGP 176
Score = 31.6 bits (70), Expect = 0.51
Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 103 HPFAGSPLDLVVSQSGWRLSTPAVG-------PRPAAR---------RAAPSSPAVPREG 146
H +GSP +G + PA G P PA R R P SP P
Sbjct: 61 HVVSGSP----AGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVP 116
Query: 147 QRAAPP-----PRPSGTFAASARLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAA 201
APP P P G+ + A + A P A + P GP + + G
Sbjct: 117 AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP 176
Query: 202 AGGP 205
GP
Sbjct: 177 GPGP 180
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 130 PAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGR--GSPARPGARASHPP 186
PA R+ P S A ++ Q+ PPP T A +A + R G A A PP
Sbjct: 662 PALRQLTPDSAAFIQQSQQQPPPPTSQATTALTAVVLSSSVQRTAGKTAATVTSALQPP 720
Score = 28.1 bits (61), Expect = 5.6
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 124 PAVGPRPAARRAAPSSPAVPRE-----GQRAAP--PPRPSGTFAASARLSPGLAGRGSPA 176
PA RP +A S VP G AP P +P+G A +AR PG
Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG------ 175
Query: 177 RPGARASHPPGP 188
PG PGP
Sbjct: 176 -PGPGPGPGPGP 186
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 116 QSGWRLSTPAVGPRP--AARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRG 173
QSG RL A GPRP ++ RA+P +PA P+ R AP AAS PG G+G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAPGR------AASGGSGPGSRGQG 166
Query: 174 SP---ARPGARASHPP 186
S ARP PP
Sbjct: 167 SDQVGARPSRAGGQPP 182
Score = 34.3 bits (77), Expect = 0.078
Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 135 AAPSSPAVPREGQR---AAPPPRPSGTFAASARLSPGLAGRGSPAR--PGARASHPPGPV 189
A P P+ + G R AAP PRP +SAR SP A + AR PG AS GP
Sbjct: 105 AVPPRPSQHQSGSRLRPAAPGPRPG---CSSARASPAPAAPQAAARTAPGRAASGGSGP- 160
Query: 190 GVFGASSQGLAAAGGPERR 208
G+ QG G R
Sbjct: 161 ---GSRGQGSDQVGARPSR 176
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS---PARPG----- 179
P P +R + P PR R+ P SGT ++ P GS PA PG
Sbjct: 73 PHPDSRTRPAARPPHPRT--RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
Query: 180 --ARASHPPGPVGVFGASSQGLAAAGG 204
ARAS P ++ G AA+GG
Sbjct: 131 SSARASPAPAAPQAAARTAPGRAASGG 157
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 116 QSGWRLSTPAVGPRP--AARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRG 173
QSG RL A GPRP ++ RA+P +PA P+ R AP AAS PG G+G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAPGR------AASGGSGPGSRGQG 166
Query: 174 SP---ARPGARASHPP 186
S ARP PP
Sbjct: 167 SDQVGARPSRAGGQPP 182
Score = 34.3 bits (77), Expect = 0.078
Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 135 AAPSSPAVPREGQR---AAPPPRPSGTFAASARLSPGLAGRGSPAR--PGARASHPPGPV 189
A P P+ + G R AAP PRP +SAR SP A + AR PG AS GP
Sbjct: 105 AVPPRPSQHQSGSRLRPAAPGPRPG---CSSARASPAPAAPQAAARTAPGRAASGGSGP- 160
Query: 190 GVFGASSQGLAAAGGPERR 208
G+ QG G R
Sbjct: 161 ---GSRGQGSDQVGARPSR 176
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS---PARPG----- 179
P P +R + P PR R+ P SGT ++ P GS PA PG
Sbjct: 73 PHPDSRTRPAARPPHPRT--RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
Query: 180 --ARASHPPGPVGVFGASSQGLAAAGG 204
ARAS P ++ G AA+GG
Sbjct: 131 SSARASPAPAAPQAAARTAPGRAASGG 157
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 116 QSGWRLSTPAVGPRP--AARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRG 173
QSG RL A GPRP ++ RA+P +PA P+ R AP AAS PG G+G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAPGR------AASGGSGPGSRGQG 166
Query: 174 SP---ARPGARASHPP 186
S ARP PP
Sbjct: 167 SDQVGARPSRAGGQPP 182
Score = 34.3 bits (77), Expect = 0.078
Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 135 AAPSSPAVPREGQR---AAPPPRPSGTFAASARLSPGLAGRGSPAR--PGARASHPPGPV 189
A P P+ + G R AAP PRP +SAR SP A + AR PG AS GP
Sbjct: 105 AVPPRPSQHQSGSRLRPAAPGPRPG---CSSARASPAPAAPQAAARTAPGRAASGGSGP- 160
Query: 190 GVFGASSQGLAAAGGPERR 208
G+ QG G R
Sbjct: 161 ---GSRGQGSDQVGARPSR 176
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS---PARPG----- 179
P P +R + P PR R+ P SGT ++ P GS PA PG
Sbjct: 73 PHPDSRTRPAARPPHPRT--RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
Query: 180 --ARASHPPGPVGVFGASSQGLAAAGG 204
ARAS P ++ G AA+GG
Sbjct: 131 SSARASPAPAAPQAAARTAPGRAASGG 157
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 116 QSGWRLSTPAVGPRP--AARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRG 173
QSG RL A GPRP ++ RA+P +PA P+ R AP AAS PG G+G
Sbjct: 114 QSGSRLRPAAPGPRPGCSSARASP-APAAPQAAARTAPGR------AASGGSGPGSRGQG 166
Query: 174 SP---ARPGARASHPP 186
S ARP PP
Sbjct: 167 SDQVGARPSRAGGQPP 182
Score = 34.3 bits (77), Expect = 0.078
Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 135 AAPSSPAVPREGQR---AAPPPRPSGTFAASARLSPGLAGRGSPAR--PGARASHPPGPV 189
A P P+ + G R AAP PRP +SAR SP A + AR PG AS GP
Sbjct: 105 AVPPRPSQHQSGSRLRPAAPGPRPG---CSSARASPAPAAPQAAARTAPGRAASGGSGP- 160
Query: 190 GVFGASSQGLAAAGGPERR 208
G+ QG G R
Sbjct: 161 ---GSRGQGSDQVGARPSR 176
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS---PARPG----- 179
P P +R + P PR R+ P SGT ++ P GS PA PG
Sbjct: 73 PHPDSRTRPAARPPHPRT--RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGC 130
Query: 180 --ARASHPPGPVGVFGASSQGLAAAGG 204
ARAS P ++ G AA+GG
Sbjct: 131 SSARASPAPAAPQAAARTAPGRAASGG 157
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 42.4 bits (98), Expect = 3e-04
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 122 STPAVGPRPAARRAA--PSSPAVPREGQRAAP-----PPRPSGTFAASARLSPG--LAGR 172
++P GP PA+ A P+ PA P + + A P PPR + A+ P L GR
Sbjct: 146 ASPYGGPTPASYTTASTPAGPAFPVQVKVAQPVRGCGPPRRGASQASGPLPGPHFPLPGR 205
Query: 173 GSPARPGARASHPPGP------VGVFGASSQGLAAAGGPE 206
G PG R+ PGP GV G + +G GP+
Sbjct: 206 GEVWGPGYRSQREPGPGAKEEAAGVSGPAGRGRGGEHGPQ 245
Score = 30.0 bits (66), Expect = 1.5
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 94 TPHSIVTLAHPFAGS-PLDLVVSQSGWRLSTP------AVGPRPAARRAAPSSPAVPREG 146
TP S T + P + P+ + V+Q P A GP P P V G
Sbjct: 153 TPASYTTASTPAGPAFPVQVKVAQPVRGCGPPRRGASQASGPLPGPHFPLPGRGEVWGPG 212
Query: 147 QRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPP 186
R+ P P A+ P GRG P S PP
Sbjct: 213 YRSQREPGPGAKEEAAGVSGPAGRGRGGEHGPQVPLSQPP 252
>gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo
sapiens]
Length = 592
Score = 40.8 bits (94), Expect = 8e-04
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 105 FAGSPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAP-PPRPSGTFAASA 163
+ GS V+ S W PA GP+P A P SP P E +P P S S
Sbjct: 499 WTGSGFAKVLPPSPWA-PAPADGPQPPKDSATPLSPQPPSEEPATSPWPAEQSPKSRTSE 557
Query: 164 RLSPGLAGR--GSPARPGARASHPPGPVGVFGASS 196
+ G R GSPA R P PV GAS+
Sbjct: 558 EMGAGAPMREPGSPAESEGRDQAQPSPVTQPGASA 592
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 40.8 bits (94), Expect = 8e-04
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 128 PRPAARRAAPSSPAVPRE-GQRAAP----------PPRPSGTFAASARLSP----GLAGR 172
P P + AP P P E G P PP P G L P GL G+
Sbjct: 58 PGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGK 117
Query: 173 GSPARPG-ARASHPPGPVGVFG-ASSQGLAAAGGP 205
G P PG A S PPG +G+ G GL GP
Sbjct: 118 GLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGP 152
Score = 27.3 bits (59), Expect = 9.5
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 25/99 (25%)
Query: 131 AARRAAPSSP-AVPREGQRAAP-PPRPSGTFA-ASARLSPGLAG-RGSPARPGARASH-- 184
AA P +P ++ R G P PP P G+ AR PG G G PG R +
Sbjct: 541 AAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGD 600
Query: 185 -------------------PPGPVGVFGASSQGLAAAGG 204
P GP GV G S G A G
Sbjct: 601 RGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPG 639
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/90 (37%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 125 AVGPRPAA---RRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGR-GSPARPGA 180
AVG PAA R+ S P+ R PP P + A A GL GR G P R G
Sbjct: 140 AVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGL 199
Query: 181 RASHPPGPVGV---FGASSQGLAAAGGPER 207
+ + P PVGV G + LA A P R
Sbjct: 200 QGAAVPPPVGVPSLRGRPWEALATAATPRR 229
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 125 AVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASH 184
AVG +P A RA A E A P R +GT + + P +GRG A P S
Sbjct: 52 AVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTS- 110
Query: 185 PPGPVGVFGASS 196
PGPV G +S
Sbjct: 111 -PGPVSSPGRAS 121
Score = 31.6 bits (70), Expect = 0.51
Identities = 31/114 (27%), Positives = 38/114 (33%), Gaps = 1/114 (0%)
Query: 94 TPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPP 153
TP + AG+ + L R P GPR + A+ S P R P
Sbjct: 171 TPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSA 230
Query: 154 RPSGTFAASARLSPGLAGRGSPARPGARA-SHPPGPVGVFGASSQGLAAAGGPE 206
AS LS SPAR G A P P +GL A P+
Sbjct: 231 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 28.5 bits (62), Expect = 4.3
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 26/122 (21%)
Query: 75 PFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARR 134
PF+PP +++ FS P S P A P SQ+ L+ P + +
Sbjct: 439 PFSPPPSPPVQAPFSPPASPPVS------PSATPP-----SQAPPSLAAPPL-------Q 480
Query: 135 AAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHP----PGPVG 190
PS PA P A PPP+ AA P + P P A A+ P P P
Sbjct: 481 VPPSPPASPPMSPSATPPPQAPPPLAA----PPLQLAKPPPQAPPALATPPLQALPSPPA 536
Query: 191 VF 192
F
Sbjct: 537 SF 538
Score = 28.5 bits (62), Expect = 4.3
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 104 PFAGSPLDLVVS--QSGWRLSTPAVGPRPAARRA----APSSPAVPREGQRAAPPPRPSG 157
P A PL L Q+ L+TP + P+ + AP SP+ A PP +
Sbjct: 504 PLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP 563
Query: 158 TFAASARLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAAAGGP 205
A+ L + SP R PGP LA A GP
Sbjct: 564 PVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP 611
Score = 28.5 bits (62), Expect = 4.3
Identities = 39/126 (30%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 77 APPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAA 136
+PP ++ FS + P S LA P +P L S PA A RR
Sbjct: 533 SPPASFPGQAPFSPSASLPMS--PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPP 590
Query: 137 PSSPAVPREGQRA----APPPRPSGTFAASARLS-PGLAGRGSPA--RPGARASHPPGPV 189
P G R AP P P + + S+ LS P LAG S A P + GP
Sbjct: 591 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE 650
Query: 190 GVFGAS 195
G AS
Sbjct: 651 GGAAAS 656
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 125 AVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASH 184
AVG +P A RA A E A P R +GT + + P +GRG A P S
Sbjct: 52 AVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTS- 110
Query: 185 PPGPVGVFGASS 196
PGPV G +S
Sbjct: 111 -PGPVSSPGRAS 121
Score = 31.6 bits (70), Expect = 0.51
Identities = 31/114 (27%), Positives = 38/114 (33%), Gaps = 1/114 (0%)
Query: 94 TPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPP 153
TP + AG+ + L R P GPR + A+ S P R P
Sbjct: 171 TPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSA 230
Query: 154 RPSGTFAASARLSPGLAGRGSPARPGARA-SHPPGPVGVFGASSQGLAAAGGPE 206
AS LS SPAR G A P P +GL A P+
Sbjct: 231 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Score = 30.4 bits (67), Expect = 1.1
Identities = 36/143 (25%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 75 PFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAAR- 133
PF+PP + + + P S+ A PL + S +P+ P P A
Sbjct: 676 PFSPPASPPVSPSATPPSQAPPSL-------AAPPLQVPPSPPASPPMSPSATPPPQAPP 728
Query: 134 -------RAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPP 186
+ PS PA P A PPPR AA P P P A+ P
Sbjct: 729 PLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAK----P 784
Query: 187 GPVGVFGASSQGLAAAGGPERRF 209
P ++ L A P F
Sbjct: 785 PPQAPPALATPPLQALPSPPASF 807
Score = 28.5 bits (62), Expect = 4.3
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 75 PFAPPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARR 134
PF+PP +++ FS P S P A P SQ+ L+ P + +
Sbjct: 664 PFSPPPSPPVQAPFSPPASPPVS------PSATPP-----SQAPPSLAAPPL-------Q 705
Query: 135 AAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA 180
PS PA P A PPP+ AA P P P A
Sbjct: 706 VPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSA 751
Score = 28.5 bits (62), Expect = 4.3
Identities = 39/126 (30%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 77 APPWVLALESVFSLTNMTPHSIVTLAHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAA 136
+PP ++ FS + P S LA P +P L S PA A RR
Sbjct: 802 SPPASFPGQAPFSPSASLPMS--PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPP 859
Query: 137 PSSPAVPREGQRA----APPPRPSGTFAASARLS-PGLAGRGSPA--RPGARASHPPGPV 189
P G R AP P P + + S+ LS P LAG S A P + GP
Sbjct: 860 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE 919
Query: 190 GVFGAS 195
G AS
Sbjct: 920 GGAAAS 925
Score = 27.3 bits (59), Expect = 9.5
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 108 SPLDLVVSQSGWRLSTPAVGPRPAARRA----APSSPAVPREGQRAAPPPRPSGTFAASA 163
SPL Q+ L+TP + P+ + AP SP+ A PP + A+
Sbjct: 779 SPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP 838
Query: 164 RLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAAAGGP 205
L + SP R PGP LA A GP
Sbjct: 839 LLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGP 880
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.0 bits (92), Expect = 0.001
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 120 RLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS----- 174
R +TP PR A R AP++ A APPP P+ AA+ +P A +
Sbjct: 104 RGATPPAPPR--APRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPS 161
Query: 175 --PARPGARASH-------PPGPVGVFGASSQGLAAAGGPER 207
PA+PG RA PP P A+ +A GP R
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAP-----AAPPAVAPPAGPRR 198
Score = 35.8 bits (81), Expect = 0.027
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 122 STPAVGPRPAARRA-APSSPAVPREGQRA-------APPPRPSGTFAASARLSPGLAGRG 173
+ PA PR AA A AP SP + G RA APPP P AA ++P R
Sbjct: 143 AAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAP----AAPPAVAPPAGPRR 198
Query: 174 SPARPGARASHPPGP 188
+P P A PP P
Sbjct: 199 APP-PAVAAREPPLP 212
Score = 28.9 bits (63), Expect = 3.3
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 122 STPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGAR 181
+ P P PA AAP + A P +RA PP A +AR P PA P +
Sbjct: 174 AAPLAAPPPAP--AAPPAVAPPAGPRRAPPP-------AVAAREPPLPPPPQPPAPPQQQ 224
Query: 182 ASHPPGPVGVFGASSQGLAAAGGPER 207
PP P G AGG R
Sbjct: 225 QPPPPQPQ---PPPEGGAVRAGGAAR 247
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 116 QSGWRLSTPAVGPRPAARRAAPSSPAVPREGQ-RAAPPPRPSGTFAASARLSPGLAGRGS 174
QS R +P V P P R P PA PRE R P P PS A A SPGLA R +
Sbjct: 544 QSLHRDFSPRV-PLPRLDRLLPP-PAPPREDPPRPTPRPPPSAALLAGALWSPGLAKRRA 601
Query: 175 PARPGARASHPPGPVGVFGASSQGLAAA--GGPER 207
A G + G G AAA GG +R
Sbjct: 602 ERARRGGAGRTAGSIAREGGGGAGTAAAVLGGWKR 636
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/110 (33%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 102 AHPFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSG-TFA 160
A P A SP S S L RP R APS +P + +P PRPS
Sbjct: 1964 AAPGATSPSASSSSTSTRHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPIL 2023
Query: 161 ASARLSPGL--------AGRGSPARPGARASHPPGPVGVFGASSQGLAAA 202
S L PGL G G A P A PP P G+ G L+ A
Sbjct: 2024 PSGPLYPGLFDIRGSPTGGAGGSADPFAPVFVPPHP-GISGGLGGALSGA 2072
Score = 31.6 bits (70), Expect = 0.51
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 128 PRPAARRAAPSSPAVPREGQR------AAPPPRPS-----GTFAASARLSPGLAGRGSPA 176
P P+ RR+ P SP PR + PPP PS G F L P L S
Sbjct: 1519 PPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDVEDGEFLFVEPLPPPLEFSNSFE 1578
Query: 177 RPGARASHPPGP 188
+P + + PGP
Sbjct: 1579 KPESPLT--PGP 1588
Score = 30.0 bits (66), Expect = 1.5
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 128 PRPAARRA-APSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPP 186
P+P A P P + G PPPR + S R G G G PGA +
Sbjct: 1011 PQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLR---GWRGGGPSPTPGAPSPSHH 1067
Query: 187 GPVGVFGASSQGLA 200
G G G SSQG A
Sbjct: 1068 GSAGGGGGSSQGPA 1081
Score = 28.5 bits (62), Expect = 4.3
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 128 PRPAARRAAPSSPA--VPREGQRAAPPPRPSGTFAASARLSP-GLAGRGSPARPGARASH 184
P P AP++P VP AAPP S + ++ S +G+ A PG H
Sbjct: 1589 PHPLPDTPAPATPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGD--PH 1646
Query: 185 PPGP 188
PPGP
Sbjct: 1647 PPGP 1650
Score = 28.1 bits (61), Expect = 5.6
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 111 DLVVSQSGWRLSTPAVGPRPAAR-RAAPSSPAVPREGQ--RAAPPPRPSGTFAASARLSP 167
D +V + S+ A GP ++ ++ PS+P R+A PR + + S P
Sbjct: 447 DWMVFSAPGAASSGAPGPTSGSQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHP 506
Query: 168 GLAGRGSPARPGARASHPPGPVGVFGASSQGLAAAGGPERR 208
A R RP + + GP G G S + G RR
Sbjct: 507 EDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGSLGSRGRR 547
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 115 SQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPR-------PSGTFAASARLSP 167
S G R +P+ P P RR +PS PR + PPPR P + R SP
Sbjct: 541 SPRGRRRRSPS--PPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
Query: 168 GLAGRGSPARPGAR--ASHPPGP 188
+ R SP+ P R AS PP P
Sbjct: 599 PIQRRYSPSPPPKRRTASPPPPP 621
Score = 32.0 bits (71), Expect = 0.39
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 120 RLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSG-TFAASARLSPGLAGRGSPARP 178
RLS A PR RR PS PA P R +P P+ S T + +SPG
Sbjct: 387 RLSPSASPPR---RRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHK 443
Query: 179 GARASHPPGP 188
G P P
Sbjct: 444 GTEKRESPSP 453
Score = 31.6 bits (70), Expect = 0.51
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGR----GSPAR------ 177
P P RRA+PS P P+ +PPP+ + + R SP L+ + SP+R
Sbjct: 618 PPPPKRRASPSPP--PKRRVSHSPPPKQRSS-PVTKRRSPSLSSKHRKGSSPSRSTREAR 674
Query: 178 ---PGARASHPPGPVGVFGASSQ---GLAAAGGPERR 208
P R S P P +SS A+ P+RR
Sbjct: 675 SPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRR 711
Score = 29.3 bits (64), Expect = 2.5
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 25/73 (34%)
Query: 128 PRPAARRAAPS------------SPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSP 175
P P RR +PS SP+ P + + A+PPP P R SP SP
Sbjct: 582 PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPP------KRRASP------SP 629
Query: 176 ARPGARASHPPGP 188
P R SH P P
Sbjct: 630 P-PKRRVSHSPPP 641
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 133 RRAAPSSPAVPREGQRAAPPP----RPSGTFAASARLSPGLAGRGSPARPGARASHPPGP 188
RR AP +P +P PP RPS TF +A + AG PA P PG
Sbjct: 223 RRKAPPAPPLPPPPPPGGPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGA 282
Query: 189 VGVFGASSQGLAAAGGPER 207
G Q GP+R
Sbjct: 283 PGGARTPGQNNLNRPGPQR 301
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARAS 183
PA RPAA R + + A PR R +P P+ G ++ L P L RG+PA P A +
Sbjct: 58 PAPRERPAAARLSALAAAQPR---RRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPS- 113
Query: 184 HPPGPV 189
PGP+
Sbjct: 114 --PGPL 117
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARAS 183
PA RPAA R + + A PR R +P P+ G ++ L P L RG+PA P A +
Sbjct: 58 PAPRERPAAARLSALAAAQPR---RRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPS- 113
Query: 184 HPPGPV 189
PGP+
Sbjct: 114 --PGPL 117
Score = 28.5 bits (62), Expect = 4.3
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 124 PAVGPRPAARRAAPSSPAVPREG----QRAAPPPRPSGTFAASARLSPGLAGRGSPARPG 179
PA+ PR AP+ PA P G + ++PPPRPS + P A +P P
Sbjct: 98 PALQPR-----GAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSA-LAAPRPPL 151
Query: 180 ARASHPPGPVGVFGASSQ-----GLAAAGGPE 206
AR P P G A Q AG PE
Sbjct: 152 AR----PLPQGSVTAREQEQRPRSRRRAGAPE 179
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARAS 183
PA RPAA R + + A PR R +P P+ G ++ L P L RG+PA P A +
Sbjct: 58 PAPRERPAAARLSALAAAQPR---RRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPS- 113
Query: 184 HPPGPV 189
PGP+
Sbjct: 114 --PGPL 117
Score = 28.5 bits (62), Expect = 4.3
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 124 PAVGPRPAARRAAPSSPAVPREG----QRAAPPPRPSGTFAASARLSPGLAGRGSPARPG 179
PA+ PR AP+ PA P G + ++PPPRPS + P A +P P
Sbjct: 98 PALQPR-----GAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSA-LAAPRPPL 151
Query: 180 ARASHPPGPVGVFGASSQ-----GLAAAGGPE 206
AR P P G A Q AG PE
Sbjct: 152 AR----PLPQGSVTAREQEQRPRSRRRAGAPE 179
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 128 PRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSP------------ 175
P+P P P +P ++ P +G F++ LSPG G+P
Sbjct: 370 PQPEFFGDLPRKPPLPSSASESSLPAAVAG-FSSRHPLSPGFGAAGTPRWRSGGLVHSGG 428
Query: 176 ARPGARASHPPGPVGVFGASSQGLAAAGGP 205
ARPG R SHPP + ASS G A P
Sbjct: 429 ARPGLRPSHPPRRRPLPPASSLGHPPAKPP 458
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 115 SQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGS 174
S R P PR + +A SP VP + PPP P LSP L+G
Sbjct: 638 SNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPAPP--------LSPALSGLPR 689
Query: 175 PARP-GARASHPP 186
PA P G+ HPP
Sbjct: 690 PASPYGSLRRHPP 702
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 108 SPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSP 167
SPL + Q G + + P +G PA P P PR G+ PPP +
Sbjct: 416 SPLGAL--QPGAQPANPLLGELPAGGGLPPELP--PRRGK---PPPLLPSVLGPAGGDRE 468
Query: 168 GLAGRGSPARPGARASHPPGPVGVFGASSQGLAAAGGP 205
L G G PA A+ + PP PVG+ G+ +GL GP
Sbjct: 469 AL-GLGPPA---AQLTPPPAPVGLRGSGLRGLQKDSGP 502
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 38.5 bits (88), Expect = 0.004
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 124 PAVGPRPAARRAAPSS---PAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGA 180
PA+ P P A A S+ P++P G AA +G+ AA+A +PG AG SP P
Sbjct: 194 PALLP-PCATGALGSALRGPSLPALGAGAA-----AGSAAAAAAAAPGPAGAASPHPPAV 247
Query: 181 RASHPPGPVGVFGASSQGLAAAG 203
+ PGP G G G AAG
Sbjct: 248 GGAPGPGPAGP-GGLHAGAPAAG 269
Score = 31.2 bits (69), Expect = 0.66
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 122 STPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGAR 181
S PA+G AA AA ++ A P A+P P G PG G+PA +
Sbjct: 213 SLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSL 272
Query: 182 ASHP-PGPVGVFGA--SSQGLAAAG 203
S P P +G + SS L AG
Sbjct: 273 FSLPVPSLLGSVASRLSSAPLTMAG 297
Score = 28.1 bits (61), Expect = 5.6
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 146 GQRAAPPPRPSGTFAASARLSPGLAGRGSPARPG---ARASHPPGPVGVFGASSQGLAAA 202
G A PP +G ++ R P L G+ A G A A+ PGP G + A
Sbjct: 192 GLPALLPPCATGALGSALR-GPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGA 250
Query: 203 GGP 205
GP
Sbjct: 251 PGP 253
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 128 PRPAARRAAPSSPAVP---------REGQRAAPP-PRPSGTFAASARLSPGLAGR-GSPA 176
P P R P +P +P G R +P P P GT R +PG+ G GS
Sbjct: 445 PGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGT--KGDRGAPGIPGSPGSRG 502
Query: 177 RPGARASHPPGPVGVFG----ASSQGLAAAGGPE 206
PG + PPGP G G S+GL GP+
Sbjct: 503 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQ 536
>gi|239752467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/59 (42%), Positives = 28/59 (47%)
Query: 144 REGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAAA 202
+EGQRA P P PS + L GS PG RAS P GP F A+ G AA
Sbjct: 69 KEGQRAQPGPGPSTPGPSMDSLEVLHLEVGSVNAPGHRASPPCGPEPYFAAADSGWLAA 127
>gi|239747010 PREDICTED: hypothetical protein XP_002344242 [Homo
sapiens]
Length = 357
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/59 (42%), Positives = 28/59 (47%)
Query: 144 REGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAAA 202
+EGQRA P P PS + L GS PG RAS P GP F A+ G AA
Sbjct: 69 KEGQRAQPGPGPSTPGPSMDSLEVLHLEVGSVNAPGHRASPPCGPEPYFAAADSGWLAA 127
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 122 STPAVGPRPAARRAAPS-SPA---VPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPAR 177
+ P PRP R P+ SPA G R + SA +PGL G G PA
Sbjct: 445 AAPEARPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLPGPGQPAG 504
Query: 178 PGARA-----SHPPGPVGVFGASSQGLAAAGG 204
PGA A P P G + S +G AGG
Sbjct: 505 PGAWAPPLDSPGTPSPDGPWCFSPEGAQGAGG 536
Score = 29.6 bits (65), Expect = 1.9
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 104 PFAGSPLDLVVSQSGWRLSTPAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASA 163
P AGSP G A P +A S+P +P GQ A P G +A
Sbjct: 459 PPAGSPARSPAHSLGLNFGD-AARQTPRHGLSALSAPGLPGPGQPAGP-----GAWA--- 509
Query: 164 RLSPGLAGRGSPARPGARASHPPGPVGVFGASSQGLAAAGGP 205
P L G+P+ G P G G G AG P
Sbjct: 510 ---PPLDSPGTPSPDGPWCFSPEGAQGAGGVLFAPFGRAGAP 548
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.7 bits (86), Expect = 0.007
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 128 PRPAARRAAPSSPAVP-------REGQRAA-----PPPRPSGTFAASARLSPGLAGRGSP 175
P PA AP SP V + G++ + PP P A + GLA G P
Sbjct: 905 PGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLA--GPP 962
Query: 176 ARPGARASHPPGPVGVFGAS----SQGLAAAGGP 205
PG R S PGP GV G S + GL+ GP
Sbjct: 963 GMPGPRGS--PGPQGVKGESGKPGANGLSGERGP 994
Score = 35.4 bits (80), Expect = 0.035
Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 128 PRPAARRAAPSSPAV--------PREGQRAAPPPRPSGTFA----ASARLSPGLAG-RGS 174
P P + P P PR PP P+G A PG+AG RGS
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796
Query: 175 PARPGARASHPPGPVGVFGASSQGLAAAGGPER 207
P G PPGP G GA Q G ER
Sbjct: 797 PGERGETG--PPGPAGFPGAPGQNGEPGGKGER 827
Score = 35.0 bits (79), Expect = 0.046
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 128 PRPAARRAAPSSP--AVPREGQRAAPPPRPSGTFAASARLSP-------GLAG-RGSPAR 177
P PA ++ A SP A PR + PP GT + P G G GSP
Sbjct: 1121 PGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGH 1180
Query: 178 PGARASHPPGPVGVFGASSQGLAAA 202
PG PPGP G G G+ AA
Sbjct: 1181 PGQPG--PPGPPGAPGPCCGGVGAA 1203
Score = 34.7 bits (78), Expect = 0.060
Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 26/109 (23%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAP-------PPRPSGTFAASA----------RLS 166
PA P AP P + G R +P PP P+G A R +
Sbjct: 772 PAGQPGDKGEGGAPGLPGIA--GPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGA 829
Query: 167 PGLAGRGSP---ARP--GARASHPPGPVGVFG--ASSQGLAAAGGPERR 208
PG G G P A P G+ + PPGP GV G S G AAG P R
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGAR 878
Score = 33.9 bits (76), Expect = 0.10
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 152 PPRPSGTFAASARLSPGLAG-RGSPARPG-ARASHPPGPVGVFGAS 195
PP P GT SPG G +G P PG A S PPGP G G S
Sbjct: 181 PPGPPGTSGHPG--SPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS 224
Score = 31.2 bits (69), Expect = 0.66
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAGRGSPARPGARAS 183
P + P R A P P G+ AA PP P G A +PGL +G P G S
Sbjct: 686 PGLAGAPGLRGGA--GPPGPEGGKGAAGPPGPPG-----AAGTPGL--QGMPGERGGLGS 736
Query: 184 HPPGPVG----VFGASSQGLAAAGGP 205
PGP G G + G+ GP
Sbjct: 737 --PGPKGDKGEPGGPGADGVPGKDGP 760
Score = 31.2 bits (69), Expect = 0.66
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 131 AARRAAPSSPAVPREGQRAAPPPR---PSGTFAASARLSPGLAG----RGSPARPGARAS 183
+ R P +P A P R P SPG G GSP PGA
Sbjct: 989 SGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGH 1048
Query: 184 H-PPGPVGVFGAS-SQGLAAAGGP 205
PPGPVG G S +G + GP
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGP 1072
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 125 AVGPRPAARRAAPSSPAVPREGQRAAPP---PRPSGTFAASARLSPGLAGR----GSPAR 177
AV P+P P++P P GQ P P P G + PG+ G+ GSP
Sbjct: 86 AVCPQP------PTAPTRPPNGQGPQGPKGDPGPPGIPGRNG--DPGIPGQPGSPGSPGP 137
Query: 178 PGARASHPPGP 188
PG S P GP
Sbjct: 138 PGICESCPTGP 148
Score = 29.3 bits (64), Expect = 2.5
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 124 PAVGPRPAARRAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAG----------RG 173
PA P P P P PP P + PG G G
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 174 SPARPGARASHPPGPVGVFG 193
P RPG R PGP G+ G
Sbjct: 235 RPGRPGERGL--PGPPGIKG 252
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 134 RAAPSSPAVPREGQRAAPPPRPSGTFAASARLSPGLAG----RGSPARPG-ARASHPPGP 188
R + P P A P P SPG G RG P G A A PPGP
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGP 385
Query: 189 VGVFGA 194
G+ G+
Sbjct: 386 PGINGS 391
Score = 28.9 bits (63), Expect = 3.3
Identities = 31/84 (36%), Positives = 32/84 (38%), Gaps = 24/84 (28%)
Query: 136 APSSPAVPREGQRAAP----------PPRPSGTFAASARLSPGLAGRGSPAR-PGAR--- 181
+P S P GQR P PP P G SPG G PA PGA
Sbjct: 358 SPGSNGAP--GQRGEPGPQGHAGAQGPPGPPGING-----SPGGKGEMGPAGIPGAPGLM 410
Query: 182 -ASHPPGPVGVFGASSQGLAAAGG 204
A PPGP G GA GL G
Sbjct: 411 GARGPPGPAGANGA--PGLRGGAG 432
Score = 28.5 bits (62), Expect = 4.3
Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 16/83 (19%)
Query: 126 VGPRPA-ARRAAPSSPAVP----REGQRAAP----PPRPSGTFAASARLSPGLAGR---- 172
+GPR A R P P +G R + PP P GT A SPG G
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGT--AGFPGSPGAKGEVGPA 356
Query: 173 GSPARPGARASH-PPGPVGVFGA 194
GSP GA PGP G GA
Sbjct: 357 GSPGSNGAPGQRGEPGPQGHAGA 379
Score = 27.7 bits (60), Expect = 7.3
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 125 AVG-PRPAARRAAPSSPAVP--REGQRAAP----PPRPSGTFAA-SARLSPGLAGR-GSP 175
A+G P PA R P P+ P ++G P PP P G + SPG G+ G P
Sbjct: 1129 AIGSPGPAGPRG-PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP 1187
Query: 176 ARPGARASHPPGPVGVFGASSQGLAAAGG 204
PGA PGP G + +A GG
Sbjct: 1188 GPPGA-----PGPC-CGGVGAAAIAGIGG 1210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,976,841
Number of Sequences: 37866
Number of extensions: 698241
Number of successful extensions: 8749
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 6194
Number of HSP's gapped (non-prelim): 3170
length of query: 209
length of database: 18,247,518
effective HSP length: 98
effective length of query: 111
effective length of database: 14,536,650
effective search space: 1613568150
effective search space used: 1613568150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.