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Search of human proteins with 239754456
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754456 PREDICTED: hypothetical protein [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754456 PREDICTED: hypothetical protein [Homo sapiens] 286 4e-78
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 30 0.59
gi|117414148 hypothetical protein LOC221322 [Homo sapiens] 29 1.0
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 28 1.7
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 28 1.7
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 28 1.7
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 28 1.7
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 28 1.7
gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens] 28 1.7
gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo sap... 28 1.7
gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 1.7
gi|239750602 PREDICTED: hypothetical protein XP_002347477 isofor... 28 1.7
gi|239750600 PREDICTED: hypothetical protein XP_002347478 isofor... 28 1.7
gi|239744909 PREDICTED: hypothetical protein XP_002343293 isofor... 28 1.7
gi|239744907 PREDICTED: hypothetical protein XP_002343294 isofor... 28 1.7
gi|24430141 fibrillin 1 precursor [Homo sapiens] 27 3.8
gi|41393551 NAD synthetase 1 [Homo sapiens] 27 3.8
gi|54873613 agrin [Homo sapiens] 27 5.0
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 27 5.0
gi|193804867 nucleolar and spindle associated protein 1 isoform ... 27 6.6
gi|193804865 nucleolar and spindle associated protein 1 isoform ... 27 6.6
gi|17505234 nucleolar and spindle associated protein 1 isoform 2... 27 6.6
gi|239757991 PREDICTED: similar to inward rectifying K+ channel ... 27 6.6
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 26 8.6
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 26 8.6
gi|7019549 T-box 21 [Homo sapiens] 26 8.6
gi|239755869 PREDICTED: hypothetical protein [Homo sapiens] 26 8.6
gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains) ... 26 8.6
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 26 8.6
gi|28866947 metallothionein 1F [Homo sapiens] 26 8.6
>gi|239754456 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 286 bits (732), Expect = 4e-78
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MYTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTDAQPTTALHLINRQVKISQSGK 60
MYTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTDAQPTTALHLINRQVKISQSGK
Sbjct: 1 MYTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTDAQPTTALHLINRQVKISQSGK 60
Query: 61 RALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLNVTAWPRERIVPPITVLGKDQN 120
RALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLNVTAWPRERIVPPITVLGKDQN
Sbjct: 61 RALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLNVTAWPRERIVPPITVLGKDQN 120
Query: 121 STYAIYLIYITFVPS 135
STYAIYLIYITFVPS
Sbjct: 121 STYAIYLIYITFVPS 135
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 30.0 bits (66), Expect = 0.59
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 40 AQPTTALHLINRQVKISQSGKRALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLN 99
A TA L+ R+ SQ L +H + H + LA SP + VP D + W P N
Sbjct: 283 APQLTASRLLQRRQIFSQK----LVEHVKEHH--KAFLASLSPAMVVPEDQLTRWHPRFN 336
Query: 100 VTAWP 104
V P
Sbjct: 337 VDEVP 341
>gi|117414148 hypothetical protein LOC221322 [Homo sapiens]
Length = 1257
Score = 29.3 bits (64), Expect = 1.0
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 42 PTTALHLINRQVKISQSGK-RALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLNV 100
PT + +I+R + ++ K R+L +E Q H I + G+ V R+HV +N+
Sbjct: 823 PTCVIDIIDRLIILNSEAKIRSLFNYE-QSH-IFGLRDFIIDGLSVERNHVL---VRINL 877
Query: 101 TAWPRERIVPPITVLGKDQN 120
P ERI+PP +L K N
Sbjct: 878 VGGPLERILPP-RLLEKSDN 896
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
Length = 789
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]
Length = 801
Score = 28.5 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 2 YTAGVPVCTAGVRVCTAGVCVCTAGVCVCTAGVCMCTD 39
YT C+ C A G +C GVC CTD
Sbjct: 585 YTGSACDCSLDTSTCEASNGQICNGRGICECGVCKCTD 622
>gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|239750602 PREDICTED: hypothetical protein XP_002347477 isoform
1 [Homo sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|239750600 PREDICTED: hypothetical protein XP_002347478 isoform
2 [Homo sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|239744909 PREDICTED: hypothetical protein XP_002343293 isoform
1 [Homo sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|239744907 PREDICTED: hypothetical protein XP_002343294 isoform
2 [Homo sapiens]
Length = 127
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45
VCT GV VC A VC AGV + A P A
Sbjct: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 9 CTAGVRVCTAGVCVCTAGV--CVCTAGVCMCTDAQ 41
C R+C G C+ T G CVC AG + D +
Sbjct: 534 CLQNGRICNNGRCINTDGSFHCVCNAGFHVTRDGK 568
>gi|41393551 NAD synthetase 1 [Homo sapiens]
Length = 706
Score = 27.3 bits (59), Expect = 3.8
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 54 KISQSGKRALHKHEVQKHNIQKMLAIQSPGIRVPRDHVADWKPWLNVTAWP 104
+++ KR K+ + +H + + P D+ D +P+L T+WP
Sbjct: 631 QVADKVKRFFSKYSMNRHKMTTLTPAYHAENYSPEDNRFDLRPFLYNTSWP 681
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 26.9 bits (58), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 7 PVCTAGVRVCTAGVCVCTAGVCVC 30
P T G VC G VC+AG CVC
Sbjct: 598 PCETCGDAVCAFGA-VCSAGQCVC 620
Score = 26.6 bits (57), Expect = 6.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 6 VPVCT--AGVRVCTAGVC-VCTAGVC----VCTAGVCMC 37
V CT + V +AG C C VC VC+AG C+C
Sbjct: 582 VHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVC 620
Score = 26.2 bits (56), Expect = 8.6
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 3 TAGVPVCTAGVRVCTAGVCVC 23
T G VC G VC+AG CVC
Sbjct: 601 TCGDAVCAFGA-VCSAGQCVC 620
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 26.9 bits (58), Expect = 5.0
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 6 VPVCTAGVRVCTAGVCVCTA------GVCVCTAGVC 35
VPVC C C C++ G C C+ G C
Sbjct: 132 VPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGAC 167
>gi|193804867 nucleolar and spindle associated protein 1 isoform 3
[Homo sapiens]
Length = 402
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 50 NRQVKISQSGKRALHKHEVQKHNIQKMLAIQSPGIR 85
NR K+ GK++L+ E K K AI +P +
Sbjct: 151 NRDSKVPSEGKKSLYTDESSKPGKNKRTAITTPNFK 186
>gi|193804865 nucleolar and spindle associated protein 1 isoform 1
[Homo sapiens]
Length = 441
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 50 NRQVKISQSGKRALHKHEVQKHNIQKMLAIQSPGIR 85
NR K+ GK++L+ E K K AI +P +
Sbjct: 151 NRDSKVPSEGKKSLYTDESSKPGKNKRTAITTPNFK 186
>gi|17505234 nucleolar and spindle associated protein 1 isoform 2
[Homo sapiens]
Length = 440
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 50 NRQVKISQSGKRALHKHEVQKHNIQKMLAIQSPGIR 85
NR K+ GK++L+ E K K AI +P +
Sbjct: 151 NRDSKVPSEGKKSLYTDESSKPGKNKRTAITTPNFK 186
>gi|239757991 PREDICTED: similar to inward rectifying K+ channel
negative regulator Kir2.2v isoform 2 [Homo sapiens]
Length = 534
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 79 IQSPGIRVPRDHVADWKPWLNV-TAWPRERIVPP 111
+Q G P H P L + T+WPR++ PP
Sbjct: 39 VQESGAEPPSQHSLRGAPCLRLPTSWPRQKQCPP 72
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 9 CTAGVRVCTAGVCVCTAGVCVCTAG 33
C + C G C G CVC+AG
Sbjct: 351 CGSTCPTCVQGSCDTVTGDCVCSAG 375
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 9 CTAGVRVCTAGVCVCTAGVCVCTAG 33
C + C G C G CVC+AG
Sbjct: 351 CGSTCPTCVQGSCDTVTGDCVCSAG 375
>gi|7019549 T-box 21 [Homo sapiens]
Length = 535
Score = 26.2 bits (56), Expect = 8.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 42 PTTALHLINRQVKISQSGKRALHKHEVQKHNIQKMLAIQSPGIRVPRDHVAD 93
P T H + ++V GK L ++ +N+ +M+ +QS PR H+ +
Sbjct: 226 PNTGAHWMRQEVSF---GKLKLTNNKGASNNVTQMIVLQSLHKYQPRLHIVE 274
>gi|239755869 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 26.2 bits (56), Expect = 8.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 62 ALHKHEVQKHNIQKMLAIQSPGI----RVPRDHVADWKPWLNVTAWPRERIVPPITVLG 116
A+HKH + ML I PGI ++P+ A + +WPR R P+T+ G
Sbjct: 39 AIHKHSL-------MLCIGRPGIEGNTQLPQSREARERE-----SWPRPRAGSPLTLQG 85
>gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains)
[Homo sapiens]
Length = 494
Score = 26.2 bits (56), Expect = 8.6
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 14 RVCTA--GVCVCTAGVCVCTAGVCMCTDAQPT 43
R CT+ G G CVC G C C D PT
Sbjct: 229 RRCTSPDGKICSNRGTCVC--GECTCHDVDPT 258
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 21 CVCTAGVCVCTAGVCMCTDAQPTTALH 47
CVC GV C C+ + AQP H
Sbjct: 919 CVCHEGVVTCARIQCISSCAQPRQGPH 945
>gi|28866947 metallothionein 1F [Homo sapiens]
Length = 61
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 21 CVCTAGVCVCTAGVCMCTDAQPTT 44
C C AGV AG C C + + T+
Sbjct: 5 CSCAAGVSCTCAGSCKCKECKCTS 28
Score = 26.2 bits (56), Expect = 8.6
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 9 CTAGVRVCTAGVCVCTAGVCV-CTAGVCMC 37
C AGV AG C C C C C C
Sbjct: 7 CAAGVSCTCAGSCKCKECKCTSCKKSCCSC 36
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.135 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,431,436
Number of Sequences: 37866
Number of extensions: 219220
Number of successful extensions: 1015
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 76
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.