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Search of human proteins with 239754378
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens] 560 e-160
gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens] 487 e-138
gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo ... 487 e-138
gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo ... 47 2e-05
gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo ... 47 2e-05
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|23510368 homeobox D11 [Homo sapiens] 39 0.007
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 37 0.025
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 37 0.025
gi|239742345 PREDICTED: hypothetical protein [Homo sapiens] 37 0.025
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 35 0.057
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] 35 0.097
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 35 0.097
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 35 0.097
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 34 0.13
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 34 0.13
gi|239754006 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239748537 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239742520 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 33 0.22
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 33 0.22
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ... 33 0.28
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 33 0.28
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 33 0.28
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 33 0.28
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 33 0.28
>gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 282
Score = 560 bits (1444), Expect = e-160
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR 120
LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR
Sbjct: 61 LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR 120
Query: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL
Sbjct: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
Query: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 240
PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL
Sbjct: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 240
Query: 241 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 282
LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ
Sbjct: 241 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 282
>gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 254
Score = 487 bits (1253), Expect = e-138
Identities = 254/282 (90%), Positives = 254/282 (90%), Gaps = 28/282 (9%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR 120
LLNYITHC RPLSRALTLPGRGARGGQGGAVRR
Sbjct: 61 LLNYITHC----------------------------RPLSRALTLPGRGARGGQGGAVRR 92
Query: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL
Sbjct: 93 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 152
Query: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 240
PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL
Sbjct: 153 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 212
Query: 241 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 282
LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ
Sbjct: 213 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 254
>gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo
sapiens]
Length = 254
Score = 487 bits (1253), Expect = e-138
Identities = 254/282 (90%), Positives = 254/282 (90%), Gaps = 28/282 (9%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR 120
LLNYITHC RPLSRALTLPGRGARGGQGGAVRR
Sbjct: 61 LLNYITHC----------------------------RPLSRALTLPGRGARGGQGGAVRR 92
Query: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL
Sbjct: 93 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 152
Query: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 240
PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL
Sbjct: 153 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 212
Query: 241 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 282
LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ
Sbjct: 213 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 254
>gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo
sapiens]
Length = 220
Score = 47.0 bits (110), Expect = 2e-05
Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHG 166
GRGA QG A AA A A A + A+VA R E V A G R GQ HH
Sbjct: 76 GRGADATQGAAGTVAASAAARPQAAEAR-AEVARGERVDERVEAGVGEAQRAPVGQAHHS 134
Query: 167 HGAARLGAAGRHALPPA----PHGRRRPQEAGTRRQGVLGADDGVR----------HCAV 212
HG G+ G H A P G Q A G + A+ G R HC
Sbjct: 135 HGQQVAGSEGGHVQGAAARVLPGGHAELQRAVA--HGAVVAEVGRREERRQQPHQPHCGA 192
Query: 213 AAAARARAVLLGAAARAQ 230
RA+ ARAQ
Sbjct: 193 GVTRRAQ------GARAQ 204
>gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo
sapiens]
Length = 220
Score = 47.0 bits (110), Expect = 2e-05
Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHG 166
GRGA QG A AA A A A + A+VA R E V A G R GQ HH
Sbjct: 76 GRGADATQGAAGTVAASAAARPQAAEAR-AEVARGERVDERVEAGVGEAQRAPVGQAHHS 134
Query: 167 HGAARLGAAGRHALPPA----PHGRRRPQEAGTRRQGVLGADDGVR----------HCAV 212
HG G+ G H A P G Q A G + A+ G R HC
Sbjct: 135 HGQQVAGSEGGHVQGAAARVLPGGHAELQRAVA--HGAVVAEVGRREERRQQPHQPHCGA 192
Query: 213 AAAARARAVLLGAAARAQ 230
RA+ ARAQ
Sbjct: 193 GVTRRAQ------GARAQ 204
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 44.7 bits (104), Expect = 9e-05
Identities = 55/178 (30%), Positives = 66/178 (37%), Gaps = 21/178 (11%)
Query: 92 RSGQGRPLSRALTLPGRGARGGQGGAVR-------RAAEAVAAVAAVQRELADVAAARRA 144
R+G+ R +RA+ GR G GG R AA A QR LA AAA A
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912
Query: 145 VEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEA--GTRRQGVLG 202
AA+ GA G H H G R A G P A G RR G
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Query: 203 ADDGVRHCAVAAAARARAVLLGAAA--------RAQLQLQLLLRPLLLQLPAELLQQL 252
H A A + V++ A A R +L L RP L ELL++L
Sbjct: 973 VGARAAHQARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL----EELLERL 1026
Score = 42.0 bits (97), Expect = 6e-04
Identities = 42/133 (31%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 73 YRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQ 132
+ K+H G V+ G G GQ R GRG R QG RR A A V
Sbjct: 347 HTKSHLGVVTIVPGRRGRAAGGQERG--------GRGRRRQQGRRGRRQAGPGLAKVDV- 397
Query: 133 RELADVAAARRAV--EEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRP 190
DV A + + V G G+ GQ H A L A PHGRR
Sbjct: 398 ----DVLAGALGLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHY 453
Query: 191 QEAGTRRQGVLGA 203
+ G R G GA
Sbjct: 454 RVRGLRGAGPEGA 466
Score = 37.0 bits (84), Expect = 0.019
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 110 ARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPG---QLHHG 166
A G +GG AV R+ A RR A G +G GA G ++ HG
Sbjct: 825 AGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHG 884
Query: 167 HG-----------------------------AARLGAAGRHALPPAPHGRRRPQEAGTR- 196
HG A G A R AP R RP G R
Sbjct: 885 HGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRS 944
Query: 197 RQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQL 235
R+ A G H A AA R R ARA Q +L
Sbjct: 945 RRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQARL 983
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 44.7 bits (104), Expect = 9e-05
Identities = 55/178 (30%), Positives = 66/178 (37%), Gaps = 21/178 (11%)
Query: 92 RSGQGRPLSRALTLPGRGARGGQGGAVR-------RAAEAVAAVAAVQRELADVAAARRA 144
R+G+ R +RA+ GR G GG R AA A QR LA AAA A
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912
Query: 145 VEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEA--GTRRQGVLG 202
AA+ GA G H H G R A G P A G RR G
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Query: 203 ADDGVRHCAVAAAARARAVLLGAAA--------RAQLQLQLLLRPLLLQLPAELLQQL 252
H A A + V++ A A R +L L RP L ELL++L
Sbjct: 973 VGARAAHQARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL----EELLERL 1026
Score = 42.0 bits (97), Expect = 6e-04
Identities = 42/133 (31%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 73 YRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQ 132
+ K+H G V+ G G GQ R GRG R QG RR A A V
Sbjct: 347 HTKSHLGVVTIVPGRRGRAAGGQERG--------GRGRRRQQGRRGRRQAGPGLAKVDV- 397
Query: 133 RELADVAAARRAV--EEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRP 190
DV A + + V G G+ GQ H A L A PHGRR
Sbjct: 398 ----DVLAGALGLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHY 453
Query: 191 QEAGTRRQGVLGA 203
+ G R G GA
Sbjct: 454 RVRGLRGAGPEGA 466
Score = 37.0 bits (84), Expect = 0.019
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 110 ARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPG---QLHHG 166
A G +GG AV R+ A RR A G +G GA G ++ HG
Sbjct: 825 AGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHG 884
Query: 167 HG-----------------------------AARLGAAGRHALPPAPHGRRRPQEAGTR- 196
HG A G A R AP R RP G R
Sbjct: 885 HGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRS 944
Query: 197 RQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQL 235
R+ A G H A AA R R ARA Q +L
Sbjct: 945 RRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQARL 983
>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 38.9 bits (89), Expect = 0.005
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 161 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 212
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
Query: 213 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 241
AAAA A A + AA + L L L PLL
Sbjct: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 38.9 bits (89), Expect = 0.005
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 161 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 212
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
Query: 213 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 241
AAAA A A + AA + L L L PLL
Sbjct: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 38.5 bits (88), Expect = 0.007
Identities = 45/122 (36%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 71 WVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGG--------AVRRAA 122
W YR G G+AG SG G PG G GG GG A AA
Sbjct: 73 WPYRGGGGG------GSAGGGSSGGG---------PGGGG-GGAGGYAPYYAAAAAAAAA 116
Query: 123 EAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAAR--LGAAGRHAL 180
A A AA+QREL A R V A E C APG H GAA A GR+ +
Sbjct: 117 AAAAEEAAMQRELLPPAGRRPDVLFKAPEPVC---AAPGPPHGPAGAASNFYSAVGRNGI 173
Query: 181 PP 182
P
Sbjct: 174 LP 175
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.025
Identities = 50/167 (29%), Positives = 64/167 (38%), Gaps = 18/167 (10%)
Query: 113 GQGGAVRRAAEAVAAVAAVQRELADVAAARR-AVEEVAAEHGCRGRGAPGQLHHGHGAAR 171
G+GG RRAA+ + + L AA R +E A RG+ P AAR
Sbjct: 150 GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLA---LRGQCGP--------AAR 198
Query: 172 LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQL 231
G A + L AP R AG G++ G AAA R + A +
Sbjct: 199 RGCA-QEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVV 257
Query: 232 QLQLLLR----PLLLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTA 274
Q LR P LL +P+ + A R F R RGR G A
Sbjct: 258 QKASYLRPKNLPRLLSMPSAAARP-CGAALPRSGFSGRPRGRGGAAA 303
Score = 31.2 bits (69), Expect = 1.1
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 23/115 (20%)
Query: 88 AGLERSG-QGRPLSRALTLPGRGARG-----GQGGAVRRAAEAVAAVAAVQRELADVAAA 141
A L RSG GRP R GRG+RG G G A A + + A R A
Sbjct: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
Query: 142 RRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPA-----PHGRRRPQ 191
R A+ GC + + G AG HA PA P R+RP+
Sbjct: 344 SR----FEAQRGCAHQDGQRRTRDG--------AGNHASEPARVWSPPPRRQRPR 386
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.025
Identities = 50/167 (29%), Positives = 64/167 (38%), Gaps = 18/167 (10%)
Query: 113 GQGGAVRRAAEAVAAVAAVQRELADVAAARR-AVEEVAAEHGCRGRGAPGQLHHGHGAAR 171
G+GG RRAA+ + + L AA R +E A RG+ P AAR
Sbjct: 150 GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLA---LRGQCGP--------AAR 198
Query: 172 LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQL 231
G A + L AP R AG G++ G AAA R + A +
Sbjct: 199 RGCA-QEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVV 257
Query: 232 QLQLLLR----PLLLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTA 274
Q LR P LL +P+ + A R F R RGR G A
Sbjct: 258 QKASYLRPKNLPRLLSMPSAAARP-CGAALPRSGFSGRPRGRGGAAA 303
Score = 31.2 bits (69), Expect = 1.1
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 23/115 (20%)
Query: 88 AGLERSG-QGRPLSRALTLPGRGARG-----GQGGAVRRAAEAVAAVAAVQRELADVAAA 141
A L RSG GRP R GRG+RG G G A A + + A R A
Sbjct: 284 AALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQPASTWALAARPRAGGTWT 343
Query: 142 RRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPA-----PHGRRRPQ 191
R A+ GC + + G AG HA PA P R+RP+
Sbjct: 344 SR----FEAQRGCAHQDGQRRTRDG--------AGNHASEPARVWSPPPRRQRPR 386
>gi|239742345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 358
Score = 36.6 bits (83), Expect = 0.025
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 106 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAAR-RAVEEVAAEHGCRGRGAPGQL 163
P RGARGG+ A+ A+ AV +R A++++AR R E G GR A L
Sbjct: 292 PDRGARGGKDAAIHLASGFSVAVPKPRRLTAELSSARGRPAHEAGTRGGTEGRAAAATL 350
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.057
Identities = 42/129 (32%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
AA A +A V A ARR V V G G L G G+ RL +H
Sbjct: 12 AAGPAAPLALVTARAVTEAVARRIVSSVRPPGRAPGPGTLFLL--GKGSPRLA---QHPA 66
Query: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARA-VLLGAAARAQLQLQLLLRP 239
HG R P+ +G+ +GV G H AAA+ RA V + AQ Q P
Sbjct: 67 ARRSHGSRLPRTSGSPEEGVSG------HGPAAAASLPRAQVPTPPPSHAQPQPLQRTLP 120
Query: 240 LLLQLPAEL 248
LPA L
Sbjct: 121 PPTSLPAAL 129
>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 34.7 bits (78), Expect = 0.097
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 85 QGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVR----RAAEAVAAVAAVQRELADVAA 140
+G +GL SG G P R GRG G G VR R AE A AA R
Sbjct: 11 RGRSGLGGSG-GAPRVR-----GRGTAVGVGIGVRVWRSRRAEGGGAEAAAARTAGGEPR 64
Query: 141 ARRAVEEVAAEHGCRGRGAPGQLHHGH--GAARLGAAGRHALPPAPHGRRRPQEAGTRRQ 198
A+R A E G G P +++HG RL A + + G R Q + +
Sbjct: 65 AQRQAGSQADEEG----GRPERVNHGQVPQGERLRAMAKGGVGKGSQGAER-QASRPHAE 119
Query: 199 GVLGADDGVRHCAVAAAARARA 220
LG R A A AAR RA
Sbjct: 120 HRLGLSHLTR-AAGAGAARRRA 140
Score = 29.3 bits (64), Expect = 4.1
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRA-VEEVAAEHGCRGRGAPGQLHH 165
G+G++G + A R AE ++ + R AA RRA + GCR
Sbjct: 103 GKGSQGAERQASRPHAEHRLGLSHLTRAAGAGAARRRAGAARTRSPKGCRA--------- 153
Query: 166 GHGAARLGAAGRHALP 181
GAARL AG A P
Sbjct: 154 --GAARLERAGGPAAP 167
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 34.7 bits (78), Expect = 0.097
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 98 PLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGR 157
P RA T G GARGG+ G VR VA+ + E +D + RR + + G R R
Sbjct: 1953 PRGRAGTEAGPGARGGRLGLVR-----VASALSSGSESSDRSGFRRQLTFIKESPGLRRR 2007
Query: 158 GAPGQLHHGHGAARLGAAGRHALPPAP 184
+ +A GA+ R P P
Sbjct: 2008 RSELSSAESAASAPQGASPRRGRPALP 2034
Score = 31.2 bits (69), Expect = 1.1
Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 81 VSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAA 140
+S F G+ L QG+ L+R T P R RGG+ + EA A A + VA
Sbjct: 802 LSLFLGSPFL----QGQALAR--TPPTR--RGGKEAEKDTSGEAAVAAKAKAKLALAVAR 853
Query: 141 ARRAVEEVAAEHGCR------GRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAG 194
+ VE+++A H G PGQ A R G A + P G RR EAG
Sbjct: 854 IDQLVEDISALHTSSDDSFSLSSGDPGQ-----EAPREGRAQSCSPCRGPEGGRR--EAG 906
Query: 195 TRRQGVL 201
+R +L
Sbjct: 907 SRAHPLL 913
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.097
Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 93 SGQGRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQ-RELADVAAARRAVEEVAAE 151
SG G L LPGRG R GG + A A EL +V E+
Sbjct: 130 SGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRM 189
Query: 152 HGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQE 192
GR A GQ G + GAA A P P P+E
Sbjct: 190 VPA-GRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEE 229
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 34.3 bits (77), Expect = 0.13
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 92 RSGQGRPLSRALTLPGR----GARGGQGGAVRRAAEAVAAV--AAVQRELADVAAARRAV 145
R+G + + AL + G+ GA+GG+ +R + +AA+ AA Q+EL + A + + V
Sbjct: 1102 RAGTPKLFNAALAMTGKMGGKGAKGGKLAHLRARLKELAALEAAAKQQELVEQAKSSQDV 1161
Query: 146 EEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHG 186
+ G G AP Q H AA A R PP P G
Sbjct: 1162 K------GEEGSAAPDQHTHPKEAATDPPAPR--TPPEPPG 1194
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 34.3 bits (77), Expect = 0.13
Identities = 32/119 (26%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 93 SGQGRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEH 152
+G G R + + RG RG + G +A+ + E A E A
Sbjct: 10 AGPGGSQGRVVRMKRRGGRGPRRGPAGGGEKALKRLKLAVEEFV------HATSEGEAPG 63
Query: 153 GCRGRGAPGQLHHGHGAAR--LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRH 209
GC GRGAP G +R L RH R E G G GA++ H
Sbjct: 64 GCEGRGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGH 122
>gi|239754006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 106 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 165
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 166 GHGAARLGAAG 176
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|239748537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 106 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 165
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 166 GHGAARLGAAG 176
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|239742520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 106 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 165
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 166 GHGAARLGAAG 176
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 33.5 bits (75), Expect = 0.22
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 88 AGLERSGQGRPLSRALTLPGRGARGGQGG 116
AG E G G P S+ TLP RG RGG G
Sbjct: 461 AGDEARGGGSPTSKTQTLPSRGPRGGGAG 489
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 59 PRLLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGG-- 116
P +L + H + W+Y + G+ + +GA SG RA GRG G+GG
Sbjct: 1415 PEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSASG-----IRAGGEAGRGMPEGRGGPG 1469
Query: 117 --AVRRAAEAVAAVAAV 131
V AA AV A A V
Sbjct: 1470 TEPVTVAAAAVTAAATV 1486
>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
Length = 102
Score = 33.1 bits (74), Expect = 0.28
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 93 SGQGRPLSRALTLPGRGARGGQGGAVR-RAAEAVAAVAAVQRELADVAAARRAVEEVAAE 151
+G G S A P + +RG +G +R R+A + ++ AA ARR E E
Sbjct: 6 TGTGTCFSSAAASPSQASRG-EGTRMRCRSARSPSSHAA------GGGGARRTKRE---E 55
Query: 152 HGCRGRGAPGQLHHGHGAARLGAAGRHALPP 182
G RG G PG G G R A GR+ PP
Sbjct: 56 RGHRG-GGPGAAGPGPGLGRAEAKGRNRRPP 85
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.28
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEH---GCRGRGAPGQL 163
GRG G +RAA+AV A R A AR A AAEH G RG G PG
Sbjct: 160 GRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGARPARGARAAEHPAVGGRGHG-PG-- 213
Query: 164 HHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARA 220
GHG GR G +EA +G +G G ++A R+ +
Sbjct: 214 --GHGCGGWRWPGRRRW----RGLAPGEEA---NEGAVGVGGGSAAASLARGPRSES 261
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 33.1 bits (74), Expect = 0.28
Identities = 63/206 (30%), Positives = 78/206 (37%), Gaps = 49/206 (23%)
Query: 86 GAAGLERSGQGRPLS-------RALTLPGRGARGG----------QGGAVRRAAEAVAAV 128
G G R G GR R+L+L GR G + G +R E A
Sbjct: 527 GGRGWRRDGGGRRQRFLGAGHLRSLSLRGRAPGRGLFHVALLMRQEAGQLR---EGAVAA 583
Query: 129 AAVQRELADVAAARRAVEEVAAEHGCRGRG-APGQLHHGHGAARLGAAGRHALPPAPHGR 187
AA +R + A VA E R G A GQ G AR G G GR
Sbjct: 584 AAAER----LPAGSPVAVLVAGEPSHRPEGLAAGQT----GKARRGGGG---------GR 626
Query: 188 RRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAE 247
R ++ G G LG G C + R +G AR LQ QLL LL A
Sbjct: 627 RGLRQRGRWLVG-LGRLGG---CLLGLGRR-----IGPGARLVLQEQLLAAESLLAAIAA 677
Query: 248 L--LQQLLHARQLRVQFGQRRRGRQG 271
+ L + L RQ ++ R RGR+G
Sbjct: 678 VHQLHRGLRRRQKELRHHGRGRGRRG 703
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.28
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEH---GCRGRGAPGQL 163
GRG G +RAA+AV A R A AR A AAEH G RG G PG
Sbjct: 309 GRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGARPARGARAAEHPAVGGRGHG-PG-- 362
Query: 164 HHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARA 220
GHG GR G +EA +G +G G ++A R+ +
Sbjct: 363 --GHGCGGWRWPGRRRW----RGLAPGEEA---NEGAVGVGGGSAAASLARGPRSES 410
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 33.1 bits (74), Expect = 0.28
Identities = 51/155 (32%), Positives = 60/155 (38%), Gaps = 20/155 (12%)
Query: 91 ERSGQGRPL-SRALTLPGRGARGGQ------GGAVRRAAEAVAAV--AAVQRELADV--A 139
+ S + RP SR T GR RG G R A AA+ AAV R L + A
Sbjct: 54 KNSRRPRPTCSRGRTERGRVERGADHQERPAGAPAHRPVPAAAAILRAAVHRVLRVLRAA 113
Query: 140 AARRAVEEVAAEHGCRGRGAPG-QLHHGHGAARLGAAGRHALPPAPHGRRRPQ-----EA 193
AA R E G R P QL GAA L +AG P G RP
Sbjct: 114 AAVRDAERGLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPL 173
Query: 194 GTRRQGVLGADDGVRHCAVAAAARARAVLLGAAAR 228
T ++ R CAV+ +A LLGA R
Sbjct: 174 ATPLLLEGRSEPSTRACAVSG---GQAALLGAHVR 205
Score = 29.3 bits (64), Expect = 4.1
Identities = 44/139 (31%), Positives = 56/139 (40%), Gaps = 36/139 (25%)
Query: 85 QGAAGLERSGQ-GR----------------PLSRALTLPGRGARGGQGGAVRRAAEAVAA 127
+GAAGL +G GR PL+ L L GR + AV + A
Sbjct: 142 RGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRSEPSTRACAV--SGGQAAL 199
Query: 128 VAAVQRELADVAA--ARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPH 185
+ A R D AA A RA ++ A G RG+G GAA PP
Sbjct: 200 LGAHVRPAPDRAARCAPRA-KKAGANAGARGQGR-------------GAAAGPERPPHVQ 245
Query: 186 GRR-RPQEAGTRRQGVLGA 203
GRR P+ A R+ +LGA
Sbjct: 246 GRRPAPRGAVGARRALLGA 264
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.28
Identities = 38/117 (32%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 107 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEH---GCRGRGAPGQL 163
GRG G +RAA+AV A R A AR A AAEH G RG G PG
Sbjct: 309 GRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGARPARGARAAEHPAVGGRGHG-PG-- 362
Query: 164 HHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARA 220
GHG GR G +EA +G +G G ++A R+ +
Sbjct: 363 --GHGCGGWRWPGRRRW----RGLAPGEEA---NEGAVGVGGGSAAASLARGPRSES 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,014,778
Number of Sequences: 37866
Number of extensions: 515426
Number of successful extensions: 2968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 2742
Number of HSP's gapped (non-prelim): 342
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.