Guide to the Human Genome
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Name: LOC100292168 Sequence: fasta or formatted (282aa) NCBI GI: 239754378
Description:

PREDICTED: similar to hCG2030094

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         47           4
 C cysteine            1.1          3           1
 D aspartate           2.1          6           2
 E glutamate           5.0         14           2
 F phenylalanine       1.8          5           2
 G glycine            11.0         31           2
 H histidine           3.9         11           2
 I isoleucine          0.7          2           1
 K lysine              1.1          3           1
 L leucine            12.4         35           3
 M methionine          1.1          3           1
 N asparagine          1.8          5           1
 P proline             5.3         15           2
 Q glutamine           8.2         23           2
 R arginine           14.5         41           3
 S serine              4.3         12           2
 T threonine           2.5          7           1
 V valine              5.0         14           1
 W tryptophan          1.1          3           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2030094 
LOC100288743          0.864   PREDICTED: similar to hCG2030094 
LOC100288743          0.864   PREDICTED: hypothetical protein XP_002342716 
LOC100289993          0.041   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.041   PREDICTED: hypothetical protein XP_002343820 
LOC728767             0.037   PREDICTED: hypothetical protein 
LOC728767             0.037   PREDICTED: hypothetical protein 
LOC729154             0.026   PREDICTED: hypothetical protein 
LOC729154             0.026   PREDICTED: hypothetical protein 
HOXD11                0.026   homeobox D11 
LOC100290372          0.022   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.022   PREDICTED: hypothetical protein XP_002342652 
LOC100132983          0.022   PREDICTED: hypothetical protein 
LOC100288686          0.019   PREDICTED: hypothetical protein XP_002342615 
LOC100294413          0.019   PREDICTED: hypothetical protein 
APC2                  0.019   adenomatosis polyposis coli 2 
SOX12                 0.019   SRY (sex determining region Y)-box 12 
CNGB1                 0.017   cyclic nucleotide gated channel beta 1 isoform a [H...
NOM1                  0.017   nucleolar protein with MIF4G domain 1 
LOC100127944          0.015   PREDICTED: hypothetical protein 
LOC100127944          0.015   PREDICTED: hypothetical protein 
LOC100127944          0.015   PREDICTED: hypothetical protein 
BRSK1                 0.015   BR serine/threonine kinase 1 
KIAA0913              0.015   hypothetical protein LOC23053 
LOC100292017          0.015   PREDICTED: hypothetical protein XP_002344620 
LOC100292292          0.015   PREDICTED: hypothetical protein 
LOC100289978          0.015   PREDICTED: hypothetical protein XP_002348035 
LOC100291384          0.015   PREDICTED: hypothetical protein XP_002347156 
LOC100289716          0.015   PREDICTED: hypothetical protein XP_002346898 
LOC100287578          0.015   PREDICTED: hypothetical protein XP_002343004 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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