Guide to the Human Genome
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Name: KIAA0913 Sequence: fasta or formatted (1842aa) NCBI GI: 122114658
Description:

hypothetical protein LOC23053

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1        186           4
 C cysteine            2.1         38           1
 D aspartate           3.5         65           3
 E glutamate           6.8        126           3
 F phenylalanine       3.0         55           1
 G glycine             8.8        163           7
 H histidine           3.3         61           2
 I isoleucine          2.0         37           1
 K lysine              3.6         66           3
 L leucine             9.6        177           2
 M methionine          2.0         36           2
 N asparagine          2.3         42           2
 P proline             9.0        166           3
 Q glutamine           3.8         70           2
 R arginine            5.7        105           3
 S serine             10.1        186           5
 T threonine           5.2         95           2
 V valine              5.4        100           2
 W tryptophan          1.5         27           2
 Y tyrosine            2.2         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23053 
ZSWIM4                0.053   zinc finger, SWIM-type containing 4 
ZSWIM6                0.043   zinc finger, SWIM-type containing 6 
ZSWIM5                0.042   zinc finger, SWIM domain containing 5 
PRRC1                 0.007   proline-rich coiled-coil 1 
YLPM1                 0.007   YLP motif containing 1 
PTPN23                0.007   protein tyrosine phosphatase, non-receptor type 23 [...
FLJ37078              0.007   hypothetical protein LOC222183 
LOC100133915          0.007   PREDICTED: hypothetical protein 
ATN1                  0.007   atrophin-1 
ATN1                  0.007   atrophin-1 
BRD4                  0.006   bromodomain-containing protein 4 isoform long 
LOC284297             0.006   hypothetical protein LOC284297 
MUC2                  0.006   mucin 2 precursor 
PHOX2B                0.006   paired-like homeobox 2b 
SF3A2                 0.006   splicing factor 3a, subunit 2 
TAF4                  0.006   TBP-associated factor 4 
PNN                   0.006   pinin, desmosome associated protein 
BCORL1                0.006   BCL6 co-repressor-like 1 
PPRC1                 0.006   peroxisome proliferator-activated receptor gamma, co...
COL27A1               0.006   collagen, type XXVII, alpha 1 
MUC12                 0.006   PREDICTED: mucin 12 
NACA                  0.006   nascent polypeptide-associated complex alpha subuni...
LOC100133714          0.006   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.006   PREDICTED: mucin 12 
PLXNB1                0.006   plexin B1 
PLXNB1                0.006   plexin B1 
SRCAP                 0.006   Snf2-related CBP activator protein 
TNRC18                0.006   trinucleotide repeat containing 18 
ZNF281                0.006   zinc finger protein 281 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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