Guide to the Human Genome
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Name: LOC729424 Sequence: fasta or formatted (136aa) NCBI GI: 239753898
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {285aa} PREDICTED: hypothetical protein
alt prot {285aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         22           3
 C cysteine            2.2          3           1
 D aspartate           2.2          3           1
 E glutamate           3.7          5           1
 F phenylalanine       2.9          4           1
 G glycine            10.3         14           2
 H histidine           2.2          3           1
 I isoleucine          0.7          1           1
 K lysine              1.5          2           2
 L leucine             5.1          7           1
 M methionine          1.5          2           1
 N asparagine          1.5          2           1
 P proline             9.6         13           3
 Q glutamine           2.9          4           1
 R arginine           16.9         23           4
 S serine              6.6          9           1
 T threonine           6.6          9           1
 V valine              4.4          6           1
 W tryptophan          2.9          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127930          0.073   PREDICTED: hypothetical protein 
LOC729424             0.062   PREDICTED: hypothetical protein 
LOC729424             0.062   PREDICTED: hypothetical protein 
SIAH2                 0.050   seven in absentia homolog 2 
LOC100291632          0.046   PREDICTED: hypothetical protein XP_002344527 
LOC100288471          0.046   PREDICTED: hypothetical protein 
LOC100288471          0.046   PREDICTED: hypothetical protein XP_002343034 
HOXA13                0.038   homeobox A13 
LOC100292370          0.035   PREDICTED: hypothetical protein 
LOC100289316          0.031   PREDICTED: hypothetical protein 
LOC100289316          0.031   PREDICTED: hypothetical protein XP_002343619 
LOC100292143          0.031   PREDICTED: hypothetical protein 
LOC100132261          0.031   PREDICTED: similar to hCG2023245 
BEND4                 0.031   BEN domain containing 4 isoform b 
BEND4                 0.031   BEN domain containing 4 isoform a 
LOC100293249          0.027   PREDICTED: similar to hCG2040393 
LOC100291245          0.027   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.027   PREDICTED: hypothetical protein XP_002342883 
ZBTB47                0.027   zinc finger protein 651 
NRG3                  0.027   neuregulin 3 
CLK3                  0.027   CDC-like kinase 3 isoform a 
TCOF1                 0.027   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.027   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.027   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.027   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.027   Treacher Collins-Franceschetti syndrome 1 isoform a ...
FLJ37078              0.023   hypothetical protein LOC222183 
CIC                   0.023   capicua homolog 
RPL24                 0.023   ribosomal protein L24 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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