BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239753708 PREDICTED: hypothetical protein [Homo sapiens] (128 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753708 PREDICTED: hypothetical protein [Homo sapiens] 271 1e-73 gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo ... 271 1e-73 gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo ... 271 1e-73 gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 33 0.079 gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 32 0.18 gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo ... 31 0.30 gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa... 30 0.39 gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa... 30 0.39 gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa... 30 0.39 gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo ... 28 1.5 gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo ... 28 1.5 gi|13128992 hypothetical protein MGC2803 [Homo sapiens] 28 1.5 gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 28 2.0 gi|148664205 endothelial cell adhesion molecule [Homo sapiens] 28 2.0 gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 28 2.0 gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 28 2.0 gi|150170729 microtubule associated serine/threonine kinase 3 [H... 28 2.0 gi|103472003 forkhead box O4 [Homo sapiens] 28 2.6 gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens] 28 2.6 gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 28 2.6 gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 28 2.6 gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 27 3.3 gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens] 27 3.3 gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 27 3.3 gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens] 27 3.3 gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 27 3.3 gi|110347429 mediator complex subunit 12 [Homo sapiens] 27 3.3 gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 27 3.3 gi|13699813 WHSC1L1 protein isoform short [Homo sapiens] 27 3.3 gi|130502140 NEZHA isoform 2 [Homo sapiens] 27 4.4 >gi|239753708 PREDICTED: hypothetical protein [Homo sapiens] Length = 128 Score = 271 bits (693), Expect = 1e-73 Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA Sbjct: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 Query: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG Sbjct: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 Query: 121 RLPLTMCP 128 RLPLTMCP Sbjct: 121 RLPLTMCP 128 >gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo sapiens] Length = 128 Score = 271 bits (693), Expect = 1e-73 Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA Sbjct: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 Query: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG Sbjct: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 Query: 121 RLPLTMCP 128 RLPLTMCP Sbjct: 121 RLPLTMCP 128 >gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo sapiens] Length = 128 Score = 271 bits (693), Expect = 1e-73 Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA Sbjct: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLA 60 Query: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG Sbjct: 61 TCSSPARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCG 120 Query: 121 RLPLTMCP 128 RLPLTMCP Sbjct: 121 RLPLTMCP 128 >gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] Length = 379 Score = 32.7 bits (73), Expect = 0.079 Identities = 18/49 (36%), Positives = 20/49 (40%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFP 53 P RPP G G RR +P PR + R PT LL FP Sbjct: 272 PERPPAKGPARGAAKKRRLPAPPPRTAQPRRPAPTLPTTSTFSLLNCFP 320 >gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] Length = 291 Score = 31.6 bits (70), Expect = 0.18 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 2 TEYPHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQRHRKPTGQHGCLLRLFPTLTRSLAT 61 T +PH P G+ +P + +PAPR + P G+ G +P+L S A Sbjct: 9 TPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGPPGGRPGA---TYPSLPASFAG 65 Query: 62 CSSPARRNAQFA---SLVLGRVIRLP 84 +P ++ SL VIR+P Sbjct: 66 LGAPFEDAGSYSVNLSLAPAGVIRVP 91 >gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo sapiens] Length = 135 Score = 30.8 bits (68), Expect = 0.30 Identities = 16/39 (41%), Positives = 19/39 (48%) Query: 84 PWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCGRL 122 P GRAGW L WS + LG GRL + GR+ Sbjct: 71 PGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRV 109 >gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sapiens] Length = 448 Score = 30.4 bits (67), Expect = 0.39 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Query: 65 PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112 P RRN++ A+L GR+ + PWK R +L+ ++A E + +GR Sbjct: 20 PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 64 >gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sapiens] Length = 518 Score = 30.4 bits (67), Expect = 0.39 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Query: 65 PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112 P RRN++ A+L GR+ + PWK R +L+ ++A E + +GR Sbjct: 20 PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 64 >gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sapiens] Length = 559 Score = 30.4 bits (67), Expect = 0.39 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Query: 65 PARRNAQFASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGR 112 P RRN++ A+L GR+ + PWK R +L+ ++A E + +GR Sbjct: 61 PVRRNSKLATL--GRIFK-PWKWRKKKNEKLKQTTSALEKKMAGRQGR 105 >gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo sapiens] Length = 628 Score = 28.5 bits (62), Expect = 1.5 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 8 PPQPGVLA---GTTTPRRSGSPAPRASLVRTQRHR 39 PP+PG +A G P S +P+P +S + T HR Sbjct: 513 PPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR 547 >gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo sapiens] Length = 665 Score = 28.5 bits (62), Expect = 1.5 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 8 PPQPGVLA---GTTTPRRSGSPAPRASLVRTQRHR 39 PP+PG +A G P S +P+P +S + T HR Sbjct: 550 PPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHR 584 >gi|13128992 hypothetical protein MGC2803 [Homo sapiens] Length = 176 Score = 28.5 bits (62), Expect = 1.5 Identities = 13/33 (39%), Positives = 15/33 (45%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPRASLVRTQR 37 P RP Q AG P+R G P S V +R Sbjct: 88 PQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRR 120 >gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo sapiens] Length = 240 Score = 28.1 bits (61), Expect = 2.0 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%) Query: 20 PRRSGSPAPRASLVRTQRHRKPT-GQHGCLLRLFPTLTRSLATCSSPARRNAQFASLVLG 78 PR S S R R R T G G LR ++ TCS +++ + + V+G Sbjct: 122 PRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMG 181 Query: 79 RVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116 K R G G++ + +AA + G +L +W Sbjct: 182 A------KSRGGRGKKPQKAAAAGAKSCNGGGKKLGRW 213 >gi|148664205 endothelial cell adhesion molecule [Homo sapiens] Length = 390 Score = 28.1 bits (61), Expect = 2.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPR 29 PH PP+PG L T + P+PR Sbjct: 322 PHGPPRPGALTPTPSLSSQALPSPR 346 >gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sapiens] Length = 987 Score = 28.1 bits (61), Expect = 2.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Query: 1 MTEYPHRP--PQPGVLAGTTTPRRSGSPAPRASLVRTQRHR 39 M + RP P+PG TT +R+G PAPR V R R Sbjct: 1 MGNHSGRPEDPEPGAF---TTTKRTGIPAPREFSVTVSRER 38 >gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sapiens] Length = 709 Score = 28.1 bits (61), Expect = 2.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Query: 1 MTEYPHRP--PQPGVLAGTTTPRRSGSPAPRASLVRTQRHR 39 M + RP P+PG TT +R+G PAPR V R R Sbjct: 1 MGNHSGRPEDPEPGAF---TTTKRTGIPAPREFSVTVSRER 38 >gi|150170729 microtubule associated serine/threonine kinase 3 [Homo sapiens] Length = 1309 Score = 28.1 bits (61), Expect = 2.0 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPRA-SLVRTQRHRKPTGQHGCLLRLFP 53 P R P P V A TT S SP+ + + H +P+ HG +L P Sbjct: 1121 PCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLAAKLGP 1170 >gi|103472003 forkhead box O4 [Homo sapiens] Length = 505 Score = 27.7 bits (60), Expect = 2.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 5 PHRPPQPGVLAGTTTPRRSGS 25 P PQPG+L T PR+ GS Sbjct: 76 PAGGPQPGILGAVTGPRKGGS 96 >gi|27734809 ADP-ribosylation factor-like 10 [Homo sapiens] Length = 244 Score = 27.7 bits (60), Expect = 2.6 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 73 ASLVLGRVIRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116 A+ VLG V+ + WK G GR R W EA G RL +W Sbjct: 16 AAAVLGSVLFILWKTYFGRGRE-RRWDRG-EAWWGAEAARLPEW 57 >gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] Length = 2752 Score = 27.7 bits (60), Expect = 2.6 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 19 TPRRSGSPAPRASLVRTQRHRKPTGQHG-----CLLRLFPTLTRSLATCSSPARR 68 +P RS SP P+ + + R R +G R P +RS++ CS+ R Sbjct: 908 SPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSNVESR 962 >gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] Length = 753 Score = 27.7 bits (60), Expect = 2.6 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 4 YPHRPPQPGVLAGTTTPRRSGSPAPRA 30 YP PP P A +TTP +G PAP A Sbjct: 323 YPSGPP-PAASALSTTPGNNGVPAPAA 348 >gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo sapiens] Length = 697 Score = 27.3 bits (59), Expect = 3.3 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%) Query: 20 PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71 PR SP PRA +++ H R+ Q CL L L S A C + A + +AQ Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594 Query: 72 FASLVLGRVIR---LPWKGRAGWGRRLR 96 A ++ ++R L W + W R LR Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622 >gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens] Length = 138 Score = 27.3 bits (59), Expect = 3.3 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 58 SLATCSSPARRNAQFASLVLGRV-IRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116 SL T S P RR S LGRV L GR G +R +A RL KW Sbjct: 75 SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT---------RLPKW 125 Query: 117 IGCGR 121 G GR Sbjct: 126 GGPGR 130 >gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo sapiens] Length = 697 Score = 27.3 bits (59), Expect = 3.3 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%) Query: 20 PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71 PR SP PRA +++ H R+ Q CL L L S A C + A + +AQ Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594 Query: 72 FASLVLGRVIR---LPWKGRAGWGRRLR 96 A ++ ++R L W + W R LR Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622 >gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens] Length = 138 Score = 27.3 bits (59), Expect = 3.3 Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 58 SLATCSSPARRNAQFASLVLGRV-IRLPWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKW 116 SL T S P RR S LGRV L GR G +R +A RL KW Sbjct: 75 SLHTTSVPERRGRNKDSTSLGRVPALLECSGRKGSSQRTPRQPSAT---------RLPKW 125 Query: 117 IGCGR 121 G GR Sbjct: 126 GGPGR 130 >gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sapiens] Length = 697 Score = 27.3 bits (59), Expect = 3.3 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 11/88 (12%) Query: 20 PRRSGSPAPRASLVRTQRH----RKPTGQHGCLLRLFPTLTRS-LATCSSPARR---NAQ 71 PR SP PRA +++ H R+ Q CL L L S A C + A + +AQ Sbjct: 535 PRAHSSPEPRACKAQSKAHKRRLRRKYLQRRCLEALLHGLRGSQQARCLAVAWQHWVDAQ 594 Query: 72 FASLVLGRVIR---LPWKGRAGWGRRLR 96 A ++ ++R L W + W R LR Sbjct: 595 GAEQLVRTLLREWHLRWAWQTWWQRILR 622 >gi|110347429 mediator complex subunit 12 [Homo sapiens] Length = 2177 Score = 27.3 bits (59), Expect = 3.3 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 1 MTEYPHRPPQPGVLAGTTTPRRSGSPAP-RASLVRTQRHRKPTGQ 44 M + P RP PGVL T T P+ + S+ R Q+ P GQ Sbjct: 1865 MQKLPTRPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQQPAVPQGQ 1909 >gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] Length = 1437 Score = 27.3 bits (59), Expect = 3.3 Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPRASLVRT 35 P +PP P + T P+++GSP + + +T Sbjct: 130 PPQPPPPPSVPQTVIPKKTGSPEIKLKITKT 160 >gi|13699813 WHSC1L1 protein isoform short [Homo sapiens] Length = 645 Score = 27.3 bits (59), Expect = 3.3 Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 5 PHRPPQPGVLAGTTTPRRSGSPAPRASLVRT 35 P +PP P + T P+++GSP + + +T Sbjct: 130 PPQPPPPPSVPQTVIPKKTGSPEIKLKITKT 160 >gi|130502140 NEZHA isoform 2 [Homo sapiens] Length = 1249 Score = 26.9 bits (58), Expect = 4.4 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%) Query: 8 PPQPGVLAGTTTPRRSGSPAPRASLVRTQRH---------RKPTGQHGCLLRLFPTLTRS 58 PP V+ G TT ++ SP+P + T+R R P LRL P LTR Sbjct: 739 PPAAWVIPGPTTGPKAASPSPARRVPATRRSPGPGPSQSPRSPKHTRPAELRLAP-LTRV 797 Query: 59 L 59 L Sbjct: 798 L 798 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.137 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,089,355 Number of Sequences: 37866 Number of extensions: 284704 Number of successful extensions: 1331 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 44 Number of HSP's that attempted gapping in prelim test: 1250 Number of HSP's gapped (non-prelim): 127 length of query: 128 length of database: 18,247,518 effective HSP length: 90 effective length of query: 38 effective length of database: 14,839,578 effective search space: 563903964 effective search space used: 563903964 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.