Guide to the Human Genome
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Name: LOC100291462 Sequence: fasta or formatted (135aa) NCBI GI: 239750593
Description:

PREDICTED: hypothetical protein XP_002347442

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          8           2
 C cysteine            0.7          1           1
 D aspartate           2.2          3           1
 E glutamate           2.2          3           1
 F phenylalanine       1.5          2           1
 G glycine            15.6         21           2
 H histidine           0.7          1           1
 I isoleucine          3.0          4           2
 K lysine              3.0          4           2
 L leucine            11.9         16           3
 M methionine          2.2          3           1
 N asparagine          1.5          2           1
 P proline             9.6         13           2
 Q glutamine           1.5          2           1
 R arginine            8.1         11           2
 S serine              7.4         10           1
 T threonine           6.7          9           2
 V valine             11.1         15           2
 W tryptophan          3.7          5           1
 Y tyrosine            1.5          2           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347442 
FAM70B                0.404   family with sequence similarity 70, member B 
LOC100291726          0.184   PREDICTED: similar to family with sequence similari...
FAM70A                0.184   hypothetical protein LOC55026 isoform 2 
FAM70A                0.184   hypothetical protein LOC55026 isoform 3 
FAM70A                0.184   hypothetical protein LOC55026 isoform 1 
ACAD10                0.027   acyl-Coenzyme A dehydrogenase family, member 10 iso...
ACAD10                0.027   acyl-Coenzyme A dehydrogenase family, member 10 isof...
LOC100292943          0.024   PREDICTED: hypothetical protein 
LOC100291546          0.024   PREDICTED: hypothetical protein XP_002346625 
LOC100289522          0.024   PREDICTED: hypothetical protein XP_002342419 
SRI                   0.016   sorcin isoform a 
KRT80                 0.016   keratin 80 isoform a 
KRT80                 0.016   keratin 80 isoform b 
OSBP                  0.016   oxysterol binding protein 
SPOCD1                0.016   SPOC domain containing 1 
TMEM125               0.016   transmembrane protein 125 
SLC5A11               0.012   solute carrier family 5 (sodium/glucose cotransporte...
ASXL2                 0.012   additional sex combs like 2 
ESPL1                 0.008   separase 
LOC729956             0.008   hypothetical protein LOC729956 
LOC728636             0.008   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC647042             0.008   PREDICTED: hypothetical protein isoform 2 
LOC647042             0.008   PREDICTED: hypothetical protein isoform 1 
SLC5A2                0.008   solute carrier family 5 (sodium/glucose cotransporter...
COIL                  0.008   coilin 
LOC440295             0.008   hypothetical protein LOC440295 
SLC5A9                0.004   solute carrier family 5 (sodium/glucose cotransport...
SLC5A9                0.004   solute carrier family 5 (sodium/glucose cotransport...
REM1                  0.004   RAS-like GTP-binding protein REM 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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