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Search of human proteins with 239753497
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753497 PREDICTED: hypothetical protein [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753497 PREDICTED: hypothetical protein [Homo sapiens] 340 4e-94
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 40 7e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 38 0.004
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 38 0.004
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 38 0.004
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 38 0.004
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 37 0.010
gi|41406097 dishevelled 3 [Homo sapiens] 36 0.013
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 35 0.022
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 35 0.022
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 35 0.022
gi|239754709 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|239749260 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo ... 35 0.029
gi|239509045 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 35 0.037
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 35 0.037
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 35 0.037
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.037
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 35 0.037
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 35 0.037
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 35 0.037
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 34 0.049
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 34 0.064
gi|239754052 PREDICTED: hypothetical protein [Homo sapiens] 34 0.064
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 34 0.064
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 34 0.064
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 34 0.064
gi|239742598 PREDICTED: hypothetical protein [Homo sapiens] 34 0.064
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 33 0.084
>gi|239753497 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 340 bits (871), Expect = 4e-94
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MVAGHPEVVHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGP 60
MVAGHPEVVHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGP
Sbjct: 1 MVAGHPEVVHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGP 60
Query: 61 LAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPAL 120
LAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPAL
Sbjct: 61 LAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPAL 120
Query: 121 FLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSSRLTG 163
FLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSSRLTG
Sbjct: 121 FLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSSRLTG 163
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 40.4 bits (93), Expect = 7e-04
Identities = 38/115 (33%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 38 PGRSAWSAFPRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRST 97
PG + A PRG P PGTRGP+ P G PG + G G P P+ +T
Sbjct: 433 PGHNG-EAGPRGAP-GIPGTRGPIGPPGIP-------GFPG-SKGDPGSPGPPGPAGIAT 482
Query: 98 KDTRRQTFLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLR 152
K T PG G+S LP PPG +A P G G R
Sbjct: 483 KGLNGPTGPPGPPGPRGHSGEP------GLPGPPGPPGPPGQAVMPEGFIKAGQR 531
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.7 bits (86), Expect = 0.004
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRS----TKDTRR 102
P G P N PGT G + P + ++G PG A G++ G P PS S K
Sbjct: 902 PPGPPGN-PGTPGQRGSPGIPGVK-GQRGTPG-AKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 103 QTFLASDPGRAGN-SAPAL-FLAGLR-LPSHSRPPGKRPEAATPSGLKAHGLRSVP 155
A +PG GN P + L GL+ LP + PPG R + + GLR +P
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 28.5 bits (62), Expect = 2.7
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 38 PGRSAWSAFPRGLPWNR--PGTRGPLAAGLFPEPQLARQGLPGRAA--GKRRVGGRP-HP 92
PG + FP G P + PG +G L PE Q+ G PG G++ + G P P
Sbjct: 516 PGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
Query: 93 SPRSTKDTRRQTFLA---------SDPGRAGNSAPALFLAGLRLPSHSRPPGKRPE 139
+ + + L+ DPG G+ PA + PPG P+
Sbjct: 575 GVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPA---------GPAGPPGYGPQ 621
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.7 bits (86), Expect = 0.004
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRS----TKDTRR 102
P G P N PGT G + P + ++G PG A G++ G P PS S K
Sbjct: 902 PPGPPGN-PGTPGQRGSPGIPGVK-GQRGTPG-AKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 103 QTFLASDPGRAGN-SAPAL-FLAGLR-LPSHSRPPGKRPEAATPSGLKAHGLRSVP 155
A +PG GN P + L GL+ LP + PPG R + + GLR +P
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 28.5 bits (62), Expect = 2.7
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 38 PGRSAWSAFPRGLPWNR--PGTRGPLAAGLFPEPQLARQGLPGRAA--GKRRVGGRP-HP 92
PG + FP G P + PG +G L PE Q+ G PG G++ + G P P
Sbjct: 516 PGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
Query: 93 SPRSTKDTRRQTFLA---------SDPGRAGNSAPALFLAGLRLPSHSRPPGKRPE 139
+ + + L+ DPG G+ PA + PPG P+
Sbjct: 575 GVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPA---------GPAGPPGYGPQ 621
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.7 bits (86), Expect = 0.004
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRS----TKDTRR 102
P G P N PGT G + P + ++G PG A G++ G P PS S K
Sbjct: 902 PPGPPGN-PGTPGQRGSPGIPGVK-GQRGTPG-AKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 103 QTFLASDPGRAGN-SAPAL-FLAGLR-LPSHSRPPGKRPEAATPSGLKAHGLRSVP 155
A +PG GN P + L GL+ LP + PPG R + + GLR +P
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 28.5 bits (62), Expect = 2.7
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 38 PGRSAWSAFPRGLPWNR--PGTRGPLAAGLFPEPQLARQGLPGRAA--GKRRVGGRP-HP 92
PG + FP G P + PG +G L PE Q+ G PG G++ + G P P
Sbjct: 516 PGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
Query: 93 SPRSTKDTRRQTFLA---------SDPGRAGNSAPALFLAGLRLPSHSRPPGKRPE 139
+ + + L+ DPG G+ PA + PPG P+
Sbjct: 575 GVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPA---------GPAGPPGYGPQ 621
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.7 bits (86), Expect = 0.004
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRS----TKDTRR 102
P G P N PGT G + P + ++G PG A G++ G P PS S K
Sbjct: 902 PPGPPGN-PGTPGQRGSPGIPGVK-GQRGTPG-AKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 103 QTFLASDPGRAGN-SAPAL-FLAGLR-LPSHSRPPGKRPEAATPSGLKAHGLRSVP 155
A +PG GN P + L GL+ LP + PPG R + + GLR +P
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 28.5 bits (62), Expect = 2.7
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 38 PGRSAWSAFPRGLPWNR--PGTRGPLAAGLFPEPQLARQGLPGRAA--GKRRVGGRP-HP 92
PG + FP G P + PG +G L PE Q+ G PG G++ + G P P
Sbjct: 516 PGNTGLPGFP-GFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTP 574
Query: 93 SPRSTKDTRRQTFLA---------SDPGRAGNSAPALFLAGLRLPSHSRPPGKRPE 139
+ + + L+ DPG G+ PA + PPG P+
Sbjct: 575 GVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPA---------GPAGPPGYGPQ 621
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 36.6 bits (83), Expect = 0.010
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 71 LARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGLRLPSH 130
+A G PG A VGG P P P R + L +P P + L GL +
Sbjct: 151 VAPPGAPGLVAALHIVGGTPSPDPAGLVTPRTRVSLGGEPPSEAQPQPEVPLGGLSEAAD 210
Query: 131 S-----RPPGKRPEAATPSGL 146
S R P + P A T GL
Sbjct: 211 SLRELLRLPLRYPRALTALGL 231
>gi|41406097 dishevelled 3 [Homo sapiens]
Length = 716
Score = 36.2 bits (82), Expect = 0.013
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 9 VHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGPLAAGL-FP 67
+H GS +GA+ DT + +P HPG + W P P+ P P FP
Sbjct: 506 LHDHDGS---SGASDQDTLAPLP-----HPGAAPW---PMAFPYQYPPPPHPYNPHPGFP 554
Query: 68 EPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLA---SDPGRAGNSAPALFLAG 124
E + G G A+ + G R S RS D R++ S G +G+ + +
Sbjct: 555 ELGYSYGG--GSASSQHSEGSRSSGSNRSGSDRRKEKDPKAGDSKSGGSGSESDHTTRSS 612
Query: 125 LRLPSHSRPPGKRPEAATPSGLKAH 149
LR P P + AA+ ++H
Sbjct: 613 LRGPRERAPSERSGPAASEHSHRSH 637
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 35.4 bits (80), Expect = 0.022
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQ--LARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQT 104
P GLP PG GP P P R+G PGR K +G P + +K
Sbjct: 933 PAGLP-GVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPA 991
Query: 105 FLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSS 159
+ G AG PA P PPG P P+G P WS+
Sbjct: 992 GARGESGLAGAPGPA------GPPGPPGPPGP-PGPGLPAGFDDMEGSGGPFWST 1039
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 35.4 bits (80), Expect = 0.022
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQ--LARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQT 104
P GLP PG GP P P R+G PGR K +G P + +K
Sbjct: 518 PAGLP-GVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPA 576
Query: 105 FLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSS 159
+ G AG PA P PPG P P+G P WS+
Sbjct: 577 GARGESGLAGAPGPA------GPPGPPGPPGP-PGPGLPAGFDDMEGSGGPFWST 624
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 35.4 bits (80), Expect = 0.022
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQ--LARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQT 104
P GLP PG GP P P R+G PGR K +G P + +K
Sbjct: 698 PAGLP-GVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPA 756
Query: 105 FLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSS 159
+ G AG PA P PPG P P+G P WS+
Sbjct: 757 GARGESGLAGAPGPA------GPPGPPGPPGP-PGPGLPAGFDDMEGSGGPFWST 804
>gi|239754709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 35.0 bits (79), Expect = 0.029
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 62 AAGLFPEPQLA--RQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPA 119
A GL PEP A R + A +R++G P +P + DPGR +S+P
Sbjct: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPP---SLTVQDPGRGHSSSPD 65
Query: 120 LFLAGLRLPSHSRP-PGKRP 138
L R P P PG +P
Sbjct: 66 ALLPDARCPCPGVPSPGSQP 85
>gi|239749260 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 35.0 bits (79), Expect = 0.029
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 62 AAGLFPEPQLA--RQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPA 119
A GL PEP A R + A +R++G P +P + DPGR +S+P
Sbjct: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPP---SLTVQDPGRGHSSSPD 65
Query: 120 LFLAGLRLPSHSRP-PGKRP 138
L R P P PG +P
Sbjct: 66 ALLPDARCPCPGVPSPGSQP 85
>gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo
sapiens]
Length = 112
Score = 35.0 bits (79), Expect = 0.029
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 62 AAGLFPEPQLA--RQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPA 119
A GL PEP A R + A +R++G P +P + DPGR +S+P
Sbjct: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPP---SLTVQDPGRGHSSSPD 65
Query: 120 LFLAGLRLPSHSRP-PGKRP 138
L R P P PG +P
Sbjct: 66 ALLPDARCPCPGVPSPGSQP 85
>gi|239509045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 35.0 bits (79), Expect = 0.029
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 62 AAGLFPEPQLA--RQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPA 119
A GL PEP A R + A +R++G P +P + DPGR +S+P
Sbjct: 9 AQGLLPEPSSAHWRAAVERVLAQRRQLGSGPRWAPAGPGPP---SLTVQDPGRGHSSSPD 65
Query: 120 LFLAGLRLPSHSRP-PGKRP 138
L R P P PG +P
Sbjct: 66 ALLPDARCPCPGVPSPGSQP 85
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 34.7 bits (78), Expect = 0.037
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 10 HSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGPLAAGLFPEP 69
H R S G + T S VP QH + S P RPG A+ P
Sbjct: 87 HPRTRSPPGRSGSGT-TFSAVPPRPSQH---QSGSRLRPAAPGPRPGCSSARASPAPAAP 142
Query: 70 QLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGLR-LP 128
Q A + PGRAA G P R + + + P RAG P L R P
Sbjct: 143 QAAARTAPGRAA-----SGGSGPGSRGQGSDQ----VGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 SHSRPPGKRPEAATPSGL-KAHGLRSVPAWSS 159
S P +RP S G RS W S
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGS 225
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 34.7 bits (78), Expect = 0.037
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 10 HSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGPLAAGLFPEP 69
H R S G + T S VP QH + S P RPG A+ P
Sbjct: 87 HPRTRSPPGRSGSGT-TFSAVPPRPSQH---QSGSRLRPAAPGPRPGCSSARASPAPAAP 142
Query: 70 QLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGLR-LP 128
Q A + PGRAA G P R + + + P RAG P L R P
Sbjct: 143 QAAARTAPGRAA-----SGGSGPGSRGQGSDQ----VGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 SHSRPPGKRPEAATPSGL-KAHGLRSVPAWSS 159
S P +RP S G RS W S
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGS 225
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 34.7 bits (78), Expect = 0.037
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 10 HSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGPLAAGLFPEP 69
H R S G + T S VP QH + S P RPG A+ P
Sbjct: 87 HPRTRSPPGRSGSGT-TFSAVPPRPSQH---QSGSRLRPAAPGPRPGCSSARASPAPAAP 142
Query: 70 QLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGLR-LP 128
Q A + PGRAA G P R + + + P RAG P L R P
Sbjct: 143 QAAARTAPGRAA-----SGGSGPGSRGQGSDQ----VGARPSRAGGQPPPLTCRRCRAAP 193
Query: 129 SHSRPPGKRPEAATPSGL-KAHGLRSVPAWSS 159
S P +RP S G RS W S
Sbjct: 194 RRSARPFRRPGLPLKSRPGSGTGARSCGTWGS 225
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 34.7 bits (78), Expect = 0.037
Identities = 47/168 (27%), Positives = 64/168 (38%), Gaps = 18/168 (10%)
Query: 4 GHPEVVHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFPRGLPWNRPGTRGPLAA 63
G P HS P D A+ + P R S PR P ++ G G A
Sbjct: 326 GRPGSAHSPPDKPSSPSPRVRDKAAAAAPT---PPARGKESPSPRSAPSSQ-GRGGRAAG 381
Query: 64 GLFPEPQLARQGLPGRA---AGKRRVGGRPHPS-PRSTKDTRRQTFLASDPGRAGNSAPA 119
G + R+ R+ A +RR RP P+ PR + + + +SD G +G AP
Sbjct: 382 GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG-SGRGAPG 440
Query: 120 --------LFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVPAWSS 159
G + RPP RP + +PS AHG R P S
Sbjct: 441 PGPEPGSERGHGGHGKRAKERPPRARPASTSPSP-GAHGRRGGPEGKS 487
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 34.7 bits (78), Expect = 0.037
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 16/144 (11%)
Query: 3 AGHPEVVHSRPGSVLGAGAAAVDTASEVPFSWIQHPGRSAWSA-FPRGLPWNRPGTRGPL 61
A P + PG + AG+ A PF + PG + P P PG++ L
Sbjct: 98 APSPVMGSMAPGDTMAAGSMAAGFFQ--PFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLL 155
Query: 62 AAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALF 121
+ P P+ QG P +RV PR Q++ G P
Sbjct: 156 PGAMEPSPRA--QGHPSMGGPMQRV-----TPPRGMASVGPQSY------GGGMRPPPNS 202
Query: 122 LAGLRLPSHSRPPGKRPEAATPSG 145
LAG LP+ + PG R A+PSG
Sbjct: 203 LAGPGLPAMNMGPGVRGPWASPSG 226
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 34.7 bits (78), Expect = 0.037
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 47 PRGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRR---- 102
P G P + PG P G P ++ L G + S ++ +D R
Sbjct: 367 PGGDPSSAPG---PALLGEAAAPGNGQRSLVGSEGLSKEQLEHRERSLQTLRDIERLLLR 423
Query: 103 ----QTFLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAH 149
+ FL PG AG P P+ + PP ++P A PSGLK +
Sbjct: 424 SGETEPFLKGPPGGAGEGGP---------PAQAPPPPQQPPTAPPSGLKKY 465
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 34.7 bits (78), Expect = 0.037
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 77 PGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGL--RLPSHSRPP 134
P G RR+G R P S ++ PGR G+ + L +GL + P ++PP
Sbjct: 696 PPPGGGGRRLGPRGRPLSASQPSLPQRATGDGSPGRKGSGSERLPPSGLLAKPPRTAQPP 755
Query: 135 GKR-PEAATPSGLK 147
PE ATP GL+
Sbjct: 756 RPPVPEPATPRGLQ 769
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 34.3 bits (77), Expect = 0.049
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 1 MVAGHPEVVHSRP---GSVLGAGAAAVDTASEVPFSWIQHPGRSAWSAFP----RGLPWN 53
M+ GHP P G +LG G + E+ +Q P P RG P +
Sbjct: 801 MIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEI--RGMQGPPPQGSMLGPPQELRGPPGS 858
Query: 54 RPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTRRQTFLASDPGRA 113
+ +GP L P PQ QG PG G++ PHPS +++T L D RA
Sbjct: 859 Q-SQQGPPQGSLGPPPQGGMQGPPG-PQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRA 916
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.064
Identities = 40/125 (32%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 50 LPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGG-----RPHPSPRST------- 97
LP R G L G PE + ARQGL GR+A R G RP P P T
Sbjct: 154 LPSQRRGASCGLGPG--PESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGP 211
Query: 98 -KDTRRQTFLASDPGRAGNSAPALFLAGLRLPSHSR-----PPGKRPEAATPSGLKAHGL 151
TR +T A A A L + + +R PPG+ + S L L
Sbjct: 212 LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPL 271
Query: 152 RSVPA 156
R PA
Sbjct: 272 RFPPA 276
>gi|239754052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.064
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 34 WIQHPGRSAWSAF-PRGLPWNR------PGTRGPLAAGLFPEPQLARQGLPGRAAGKRRV 86
W + GR W P G+P +R PG+R P P PQ P A G RR
Sbjct: 135 WRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQG-----PPTAGGPRRR 189
Query: 87 G----------------GRPHPSPRSTKDTRRQTFLASDPGRAGNS 116
RPHP+ R+ + R +T L PG AG +
Sbjct: 190 SVSAGLVLAGARGPARPSRPHPAVRAGE--RERTHLRRAPGAAGRA 233
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.064
Identities = 40/125 (32%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 50 LPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGG-----RPHPSPRST------- 97
LP R G L G PE + ARQGL GR+A R G RP P P T
Sbjct: 154 LPSQRRGASCGLGPG--PESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGP 211
Query: 98 -KDTRRQTFLASDPGRAGNSAPALFLAGLRLPSHSR-----PPGKRPEAATPSGLKAHGL 151
TR +T A A A L + + +R PPG+ + S L L
Sbjct: 212 LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPL 271
Query: 152 RSVPA 156
R PA
Sbjct: 272 RFPPA 276
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.064
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 51 PWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPR-------STKDTRRQ 103
P PG R P P R P AAG R P + + + R++
Sbjct: 48 PGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQR 107
Query: 104 TFLASDPGRAGNSAPALFLAGLRLPSHSRPPGKRPEAATPSGLKAHGLRSVP 155
+ PG A +APA LRLP PP +RP P+GL S P
Sbjct: 108 VWARRLPGSA--AAPAPGRDALRLPPPPPPPPERPR-LPPAGLAGGPADSAP 156
Score = 28.5 bits (62), Expect = 2.7
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 19/65 (29%)
Query: 76 LPGRAAGKR--RVGGRPHPSPRSTKDTRRQTFLASDPGRAGNSAPALFLAGLRLPSHSRP 133
+P +A+G+R R GRPH Q LA AP +F GLR P RP
Sbjct: 1 MPNKASGRRQGRARGRPHS----------QVSLA-------RRAPLMFGPGLRDPPPPRP 43
Query: 134 PGKRP 138
RP
Sbjct: 44 APPRP 48
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 33.9 bits (76), Expect = 0.064
Identities = 40/125 (32%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 50 LPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGG-----RPHPSPRST------- 97
LP R G L G PE + ARQGL GR+A R G RP P P T
Sbjct: 154 LPSQRRGASCGLGPG--PESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGP 211
Query: 98 -KDTRRQTFLASDPGRAGNSAPALFLAGLRLPSHSR-----PPGKRPEAATPSGLKAHGL 151
TR +T A A A L + + +R PPG+ + S L L
Sbjct: 212 LPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPL 271
Query: 152 RSVPA 156
R PA
Sbjct: 272 RFPPA 276
>gi|239742598 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.064
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 30/106 (28%)
Query: 34 WIQHPGRSAWSAF-PRGLPWNR------PGTRGPLAAGLFPEPQLARQGLPGRAAGKRRV 86
W + GR W P G+P +R PG+R P P PQ P A G RR
Sbjct: 135 WRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQG-----PPTAGGPRRR 189
Query: 87 G----------------GRPHPSPRSTKDTRRQTFLASDPGRAGNS 116
RPHP+ R+ + R +T L PG AG +
Sbjct: 190 SVSAGLVLAGARGPARPSRPHPAVRAGE--RERTHLRRAPGAAGRA 233
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 33.5 bits (75), Expect = 0.084
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 48 RGLPWNRPGTRGPLAAGLFPEPQLARQGLPGRAAGKRRVGGRPHPSPRSTKDTR-----R 102
R P P + P A+ L P A G GR AG VG R SP +
Sbjct: 461 RAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGAR---SPGDVLGSGGGLIGS 517
Query: 103 QTFLASDPGRAGNSAPALF-------LAGLRLPSHSRPPGKRPEAATPSGLKAHGL 151
+ +DP R + P + LR PSH R PG ++ G + GL
Sbjct: 518 DSLPPADPLRLSHPEPGVVPFQNLRSQRDLRNPSHQRKPGVHVTSSVQPGFQGRGL 573
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,753,761
Number of Sequences: 37866
Number of extensions: 515965
Number of successful extensions: 2461
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 2285
Number of HSP's gapped (non-prelim): 444
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.