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Search of human proteins with 239751880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo ... 316 5e-87
gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo ... 316 5e-87
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens] 49 1e-06
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ... 49 1e-06
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 49 1e-06
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 45 3e-05
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 40 5e-04
gi|189571667 zinc finger protein 696 [Homo sapiens] 35 0.029
gi|134244285 Notch homolog 3 [Homo sapiens] 34 0.039
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
gi|116256460 zinc finger protein 775 [Homo sapiens] 33 0.066
gi|20162554 Kruppel-like factor 14 [Homo sapiens] 33 0.086
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 33 0.086
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 0.15
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 32 0.15
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 32 0.15
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ... 32 0.15
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 32 0.15
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ... 32 0.15
gi|157739932 mesogenin 1 [Homo sapiens] 32 0.19
gi|5031759 homeobox A11 [Homo sapiens] 32 0.19
gi|239753984 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169168504 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169167589 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 32 0.19
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 32 0.25
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 31 0.33
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 31 0.33
gi|194239638 zinc finger protein 449 [Homo sapiens] 31 0.33
gi|126090909 engrailed homeobox 1 [Homo sapiens] 31 0.43
>gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
sapiens]
Length = 146
Score = 316 bits (809), Expect = 5e-87
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV
Sbjct: 1 MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
Query: 61 LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL
Sbjct: 61 LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
Query: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
KVLPQTLHWCGFSSECEMLWRSRSER
Sbjct: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
>gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo
sapiens]
Length = 146
Score = 316 bits (809), Expect = 5e-87
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV
Sbjct: 1 MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
Query: 61 LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL
Sbjct: 61 LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
Query: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
KVLPQTLHWCGFSSECEMLWRSRSER
Sbjct: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
Length = 377
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/69 (39%), Positives = 30/69 (43%)
Query: 75 GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
G SP CT WW S RK HSG G P + CR R + K P CGFS+
Sbjct: 35 GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94
Query: 135 ECEMLWRSR 143
WR R
Sbjct: 95 ARSRNWRRR 103
Score = 34.7 bits (78), Expect = 0.029
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 37 PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
P +G H TPM F+ WR K GH G SP C RW A S
Sbjct: 21 PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78
Query: 91 SRKRRGHSGQRKGRRPAWMLQCRRR 115
RKR H Q G A RRR
Sbjct: 79 QRKRFPHCPQLCGFSAARSRNWRRR 103
>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
Length = 377
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/69 (39%), Positives = 30/69 (43%)
Query: 75 GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
G SP CT WW S RK HSG G P + CR R + K P CGFS+
Sbjct: 35 GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94
Query: 135 ECEMLWRSR 143
WR R
Sbjct: 95 ARSRNWRRR 103
Score = 34.7 bits (78), Expect = 0.029
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 37 PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
P +G H TPM F+ WR K GH G SP C RW A S
Sbjct: 21 PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78
Query: 91 SRKRRGHSGQRKGRRPAWMLQCRRR 115
RKR H Q G A RRR
Sbjct: 79 QRKRFPHCPQLCGFSAARSRNWRRR 103
>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
sapiens]
Length = 417
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/69 (39%), Positives = 30/69 (43%)
Query: 75 GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
G SP CT WW S RK HSG G P + CR R + K P CGFS+
Sbjct: 75 GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 134
Query: 135 ECEMLWRSR 143
WR R
Sbjct: 135 ARSRNWRRR 143
Score = 34.7 bits (78), Expect = 0.029
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 37 PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
P +G H TPM F+ WR K GH G SP C RW A S
Sbjct: 61 PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 118
Query: 91 SRKRRGHSGQRKGRRPAWMLQCRRR 115
RKR H Q G A RRR
Sbjct: 119 QRKRFPHCPQLCGFSAARSRNWRRR 143
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 44.7 bits (104), Expect = 3e-05
Identities = 33/83 (39%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 64 VKRSRQMGHWYGRSPECTRWWCA----------SSPA---SRKRRGHSGQRKGRRPAWML 110
VK Q G GRSP CTRW C +P K R H Q K RRP
Sbjct: 395 VKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQWDDHLKARPHWPQMKARRPV--- 451
Query: 111 QCRRRWL----ERLKVLPQTLHW 129
C RW+ ERLK L Q+ HW
Sbjct: 452 -CTLRWICSREERLKALGQSGHW 473
Score = 37.0 bits (84), Expect = 0.006
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 70 MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
+G W G RS W K G SGQRKGR P C RR + +K+ PQT
Sbjct: 379 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ 431
Query: 129 W 129
W
Sbjct: 432 W 432
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 40.4 bits (93), Expect = 5e-04
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 64 VKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR------KGRRPAWMLQCRRRWL 117
VK Q G GRSP CTRW C K + Q K RRP C R W+
Sbjct: 315 VKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV----CTRWWM 370
Query: 118 ----ERLKVLPQTLH 128
ERLK LP + H
Sbjct: 371 ASREERLKALPHSPH 385
Score = 35.0 bits (79), Expect = 0.023
Identities = 32/85 (37%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 70 MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
+G W G RS W K G SGQRKGR P C RR K+LPQT
Sbjct: 299 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQ 351
Query: 129 WCGFS------SECEMLW-RSRSER 146
G S C W SR ER
Sbjct: 352 AWGLSPVKARRPVCTRWWMASREER 376
Score = 34.3 bits (77), Expect = 0.039
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 8 AGSPFPSVSSS--SSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLAS-- 63
AGSP + S +S+ V+ S G + G G G +G L + WR +
Sbjct: 427 AGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG---GAGGL-WGWRCRCSSRLE 482
Query: 64 --VKRSRQMGHWYGRSPECTRWWC 85
VK Q G GRSP CTRW C
Sbjct: 483 EWVKVLGQSGQRKGRSPVCTRWCC 506
Score = 33.5 bits (75), Expect = 0.066
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 83 WWCASSPASR---KRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQT 126
W C S K G SGQRKGR P C RR + +K+ PQT
Sbjct: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQT 519
>gi|189571667 zinc finger protein 696 [Homo sapiens]
Length = 374
Score = 34.7 bits (78), Expect = 0.029
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 6 GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
G P S + + + +P ++ G++ G G+ +G P G +++ S A+
Sbjct: 85 GSPRGPVTSEKTGGQSGLESDVPPNAGPGAE-GGGSWKGRPFPCGACGRSFKCSSDAAKH 143
Query: 66 RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR 101
RS G +C + + SS R +R HSG+R
Sbjct: 144 RSIHSGEKPYECSDCGKAFIHSSHVVRHQRAHSGER 179
Score = 26.9 bits (58), Expect = 6.2
Identities = 30/120 (25%), Positives = 40/120 (33%), Gaps = 31/120 (25%)
Query: 13 PSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWR-----------RSVL 61
PS S S+ A ++ G+ G G G P A G L R +
Sbjct: 32 PSGSRSAEVQAAQSTEPAAEAGAPEGEGHRGGPPRALGSLGLCENQEARERPGGSPRGPV 91
Query: 62 ASVKRSRQM-----------------GHWYGR---SPECTRWWCASSPASRKRRGHSGQR 101
S K Q G W GR C R + SS A++ R HSG++
Sbjct: 92 TSEKTGGQSGLESDVPPNAGPGAEGGGSWKGRPFPCGACGRSFKCSSDAAKHRSIHSGEK 151
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 34.3 bits (77), Expect = 0.039
Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 10 SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQ 69
+P VS P +P HG P +GAH P A LR L S +
Sbjct: 2197 NPGTPVSPQERPPPYLAVPG--HGEEYPAAGAHSSPPKAR-FLRVPSEHPYLTPSPESPE 2253
Query: 70 MGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPA 107
HW SP W S+P+ G G PA
Sbjct: 2254 --HWASPSPPSLSDWSESTPSPATATGAMATTTGALPA 2289
>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 34.3 bits (77), Expect = 0.039
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 2 AGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWR 57
+ G SP P S++SA G S S G P S +P +S G R F WR
Sbjct: 63 SAGFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWR 122
Query: 58 RSVLASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
V ++K Q+ S E AS S + S K R W+L
Sbjct: 123 LRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175
>gi|116256460 zinc finger protein 775 [Homo sapiens]
Length = 537
Score = 33.5 bits (75), Expect = 0.066
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 3 GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGC-LRFAWRRSVL 61
GG ++GSP + + A P S+ G P + G + C RF+W S+
Sbjct: 64 GGQEESGSPRWAPPTEQDAGLAGRAPGSASGPLSPSLSSGEGHFVCLDCGKRFSWWSSL- 122
Query: 62 ASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLK 121
+ + G +C + + +R +R H+G+ RP +C RR+ ++
Sbjct: 123 -KIHQRTHTGEKPYLCGKCGKSFSQKPNLARHQRHHTGE----RPFCCPECARRFSQKQH 177
Query: 122 VLPQ-------TLHWCGFSSECEMLWR 141
+L H C ECE +R
Sbjct: 178 LLKHQKTHSRPATHSC---PECERCFR 201
>gi|20162554 Kruppel-like factor 14 [Homo sapiens]
Length = 323
Score = 33.1 bits (74), Expect = 0.086
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 10 SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCL--------------RFA 55
+P ++ +S A AV SSS + P + A G P ASG +
Sbjct: 124 TPCSELAPASGAAAVCAPESSSDAPAVPSAPAAPGAPAASGGFSGGALGAGPAPAADQAP 183
Query: 56 WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR 101
RRSV + KR + P CT+ + SS +R H+G+R
Sbjct: 184 RRRSVTPAAKRHQ------CPFPGCTKAYYKSSHLKSHQRTHTGER 223
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 33.1 bits (74), Expect = 0.086
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 16 SSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHWYG 75
+S+SSA A SSS S GSG+ R +S ++ R S +S SR +
Sbjct: 544 TSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFS 603
Query: 76 RSPECTRWWCASSPASRKR------RGHSGQRKGRRPA 107
SP + P+ R + G +G++ ++PA
Sbjct: 604 SSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPA 641
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.3 bits (72), Expect = 0.15
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
GG G AG P P ++ P + GMP G PG +G P G
Sbjct: 705 GGKGAAGPPGPP--GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750
Score = 31.2 bits (69), Expect = 0.33
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 GGVGQAGSPFPS----VSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
GG G AG P P S P AG P + PGS + G P SG
Sbjct: 846 GGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 3 GGVGQAGSPFP-SVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
G G++G P P S P V G P PG RG P G
Sbjct: 555 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG 603
Score = 28.5 bits (62), Expect = 2.1
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 3 GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGS---GAHRGTPMASGCLRFAWRRS 59
GG G+ G+P P VAG P S PG RG+P G F R
Sbjct: 822 GGKGERGAP--GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879
Query: 60 V 60
+
Sbjct: 880 L 880
Score = 27.3 bits (59), Expect = 4.7
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
+ G G GSP + P AG P + +PG RG P G
Sbjct: 787 LPGIAGPRGSP--GERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG 834
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.15
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 11 PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
PF S S S P+ G PSS GG+ P S A P S LR R RS L ++R
Sbjct: 69 PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126
Query: 67 SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
R RS E R +S R+R S +R+ RR + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.15
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 11 PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
PF S S S P+ G PSS GG+ P S A P S LR R RS L ++R
Sbjct: 69 PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126
Query: 67 SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
R RS E R +S R+R S +R+ RR + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174
>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
Length = 513
Score = 32.3 bits (72), Expect = 0.15
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 10 SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWRRSVLASVK 65
SP P S++SA G S S G P S +P +S G R F WR V ++K
Sbjct: 71 SPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130
Query: 66 RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
Q+ S E AS S + S K R W+L
Sbjct: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 0.15
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 11 PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
PF S S S P+ G PSS GG+ P S A P S LR R RS L ++R
Sbjct: 69 PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126
Query: 67 SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
R RS E R +S R+R S +R+ RR + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174
>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
sapiens]
Length = 513
Score = 32.3 bits (72), Expect = 0.15
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 10 SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWRRSVLASVK 65
SP P S++SA G S S G P S +P +S G R F WR V ++K
Sbjct: 71 SPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130
Query: 66 RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
Q+ S E AS S + S K R W+L
Sbjct: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175
>gi|157739932 mesogenin 1 [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 0.19
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 7 QAGSPFPSVSSSSSAP--AVAGMPSSSHGGSDPGSGAHRGTPMASG 50
Q+ SP PS+ S SS+P AVAG+P HGG+ G ASG
Sbjct: 45 QSLSPAPSLESYSSSPCPAVAGLP-CEHGGASSGGSEGCSVGGASG 89
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 32.0 bits (71), Expect = 0.19
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 7 QAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKR 66
+ G P + +S+++A A G P++S SD G G GC R + A+ ++
Sbjct: 166 EKGPPAATATSAAAAAAATGAPATS--SSDSGGG--------GGC-----RETAAAAEEK 210
Query: 67 SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLER 119
R+ SPE +S K G SGQR ++ + + R LER
Sbjct: 211 ERRRRPESSSSPE-----SSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELER 258
>gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 6 GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
G AGS + +S+APA G P + GSGA +P + L + +
Sbjct: 17 GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71
Query: 66 RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
+ Q W G+ + +C R + A +P + +GHS
Sbjct: 72 LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104
>gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 6 GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
G AGS + +S+APA G P + GSGA +P + L + +
Sbjct: 17 GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71
Query: 66 RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
+ Q W G+ + +C R + A +P + +GHS
Sbjct: 72 LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104
>gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 6 GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
G AGS + +S+APA G P + GSGA +P + L + +
Sbjct: 17 GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71
Query: 66 RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
+ Q W G+ + +C R + A +P + +GHS
Sbjct: 72 LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 32.0 bits (71), Expect = 0.19
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 13 PSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCL 52
PS S S+S+ A +G SS GG PG+G G+P A+ +
Sbjct: 121 PSTSGSASSDAGSGSRRSSGGGPSPGAG--EGSPSATASI 158
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 31.6 bits (70), Expect = 0.25
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 64 VKRSRQMGHWYGRSPECTRWWCASSPASRKRRG 96
VK Q G GRSP CTRW C A R G
Sbjct: 395 VKVLGQSGQRKGRSPVCTRWCCRRLEARRVAEG 427
Score = 27.3 bits (59), Expect = 4.7
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 70 MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRR 115
+G W G RS W K G SGQRKGR P C RR
Sbjct: 379 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRR 418
Score = 26.9 bits (58), Expect = 6.2
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 102 KGRRPAWMLQCRRRWL----ERLKVLPQTLHW 129
K RRP C RW+ ERLK L Q+ HW
Sbjct: 826 KARRPV----CTLRWICSREERLKALGQSGHW 853
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 31.2 bits (69), Expect = 0.33
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 3 GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLA 62
G G+ G SVSS S+ + A SSS S P WRRS +
Sbjct: 1418 GWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKR------WRRSSCS 1471
Query: 63 SVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRR 105
S RSR+ S + +SS + + R S +R+ R
Sbjct: 1472 SSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDR 1514
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 31.2 bits (69), Expect = 0.33
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 14 SVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHW 73
S SSSSS+ + + SSS G S S + + + R + + +S RSR G
Sbjct: 580 SSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG 639
Query: 74 YGRSPECTRWWCASSPASRKRRGHSGQRKGRR 105
+ R + R RKRR SG + +
Sbjct: 640 HNRDRKHRR------SVDRKRRDTSGLERSHK 665
>gi|194239638 zinc finger protein 449 [Homo sapiens]
Length = 518
Score = 31.2 bits (69), Expect = 0.33
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 32 HGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPAS 91
H PG HR P C R+S L +R G + PEC + + SS
Sbjct: 313 HKKKSPGEKPHR-CPQCGKCFA---RKSQLTGHQRIHS-GEEPHKCPECGKRFLRSSDLY 367
Query: 92 RKRRGHSGQRKGRRPAWMLQCRRRWLER 119
R +R H+G+ RP C++R+ R
Sbjct: 368 RHQRLHTGE----RPYECTVCKKRFTRR 391
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 30.8 bits (68), Expect = 0.43
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 4 GVGQAGSPFPSVSS-----SSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG-------- 50
G +AG+P + ++ +++A A A PS + GG GSG G+P A G
Sbjct: 191 GASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGG---GSGGGAGSPGAQGTKYPEHGN 247
Query: 51 -CLRFAWRRSVLASVKRSRQMGHWYGRSPECTRW--WCASSPASRKRRGHSGQRKGRRPA 107
+ + VK Q + CTR+ +S P +RK + +++ +RP
Sbjct: 248 PAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPR 307
Query: 108 WMLQCRRRWLERLK 121
+ L+RLK
Sbjct: 308 TAFTAEQ--LQRLK 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.130 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,083,712
Number of Sequences: 37866
Number of extensions: 374182
Number of successful extensions: 3480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 3070
Number of HSP's gapped (non-prelim): 500
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.