Guide to the Human Genome
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Search of human proteins with 239751617

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751617 PREDICTED: hypothetical protein XP_002347930 [Homo
sapiens]
         (238 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751617 PREDICTED: hypothetical protein XP_002347930 [Homo ...   507   e-144
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ...    33   0.22 
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ...    33   0.22 
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ...    33   0.22 
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    33   0.22 
gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]            32   0.37 
gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo ...    32   0.37 
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            32   0.37 
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ...    32   0.48 
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      32   0.63 
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    32   0.63 
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   32   0.63 
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                32   0.63 
gi|18860857 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860855 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860851 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860849 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860853 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860839 menin isoform 1 [Homo sapiens]                             31   0.82 
gi|18860847 menin isoform 2 [Homo sapiens]                             31   0.82 
gi|146219841 PNMA-like 2 [Homo sapiens]                                31   1.1  
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    30   1.4  
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    30   1.4  
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            30   1.4  
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             30   1.4  
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             30   1.4  
gi|222537754 hypothetical protein LOC375337 [Homo sapiens]             30   1.8  
gi|145699133 KPL2 protein isoform 1 [Homo sapiens]                     30   1.8  
gi|58218966 hypothetical protein LOC339201 [Homo sapiens]              30   1.8  
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    30   2.4  

>gi|239751617 PREDICTED: hypothetical protein XP_002347930 [Homo
           sapiens]
          Length = 238

 Score =  507 bits (1305), Expect = e-144
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC 60
           MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC
Sbjct: 1   MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC 60

Query: 61  QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPGELAVVMNHKVPRHR 120
           QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPGELAVVMNHKVPRHR
Sbjct: 61  QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPGELAVVMNHKVPRHR 120

Query: 121 PVSSVGTELLWVRCAPKMVQLPICCLLLTPAPGIGPRAHGHLHTNLETRGLPRGTRESQQ 180
           PVSSVGTELLWVRCAPKMVQLPICCLLLTPAPGIGPRAHGHLHTNLETRGLPRGTRESQQ
Sbjct: 121 PVSSVGTELLWVRCAPKMVQLPICCLLLTPAPGIGPRAHGHLHTNLETRGLPRGTRESQQ 180

Query: 181 AEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLVDCSTAGT 238
           AEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLVDCSTAGT
Sbjct: 181 AEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLVDCSTAGT 238


>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
           sapiens]
          Length = 582

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 160 GHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVR 213
           GHLH        P G  ESQ+AE   E+ QE        Q   G+ P   C +R
Sbjct: 155 GHLHPARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIR 208


>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
           sapiens]
          Length = 589

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 160 GHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVR 213
           GHLH        P G  ESQ+AE   E+ QE        Q   G+ P   C +R
Sbjct: 162 GHLHPARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIR 215


>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
           sapiens]
          Length = 329

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 160 GHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVR 213
           GHLH        P G  ESQ+AE   E+ QE        Q   G+ P   C +R
Sbjct: 162 GHLHPARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIR 215


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 151  APGIGPRAHGHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPC 210
            APG+ P A        +  G+  GT      + E EA+Q+ RG        +G  P GP 
Sbjct: 2044 APGLAPSATPGAPRIEQLDGVDDGT------DSEAEAVQQPRG--------QGTPPSGPG 2089

Query: 211  VVRAGGVG 218
            VVRAG +G
Sbjct: 2090 VVRAGVLG 2097


>gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 421

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 61/285 (21%), Positives = 95/285 (33%), Gaps = 110/285 (38%)

Query: 16  GPGRAGASEPNESTCAPEA---------LDGHLGVARREGPILGTLLGRGKGHCQALSQL 66
           G G+ G+S P E++    +         LDGH        P+   L    +       Q 
Sbjct: 7   GDGQTGSSLPVEASMVTPSPGCSVHTGDLDGH--------PLPRMLSAHRRSRWSPPPQD 58

Query: 67  GHC--------PSPAWNNYSGMMD----------------------------IGVAPSRV 90
           G C        PSP W+ ++G +D                            I +     
Sbjct: 59  GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 118

Query: 91  GPSGHCGVLRSHSRPGELAVVMNHKVPRHRPVSSVGTELLWVRCAPKMVQLPICCLLLTP 150
           G S H G L  H  P    +V  H+  R  P    G      +C P++        ++TP
Sbjct: 119 GWSVHTGDLDGHPLP---RMVSAHRRSRWSPPPQDG------QCTPEI-------SMVTP 162

Query: 151 APGIGPRAHGHLHT-NLETRGLPRGTRESQQAE---------GEGEAIQEGRGACKRAQR 200
           +PG        +HT +L+   LPR     +++            GE +QE + +C R+  
Sbjct: 163 SPG------WSVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPG 216

Query: 201 KEGEGP---------------------RGPC----VVRAGGVGWG 220
            +  GP                     +GPC       + G+GWG
Sbjct: 217 SQRLGPSQRPLGHEEGQQQPELRMASRKGPCQPLSQTWSVGIGWG 261


>gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo
           sapiens]
          Length = 389

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 6   GLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHCQALSQ 65
           G  GE  V W  GR        ++ A     G  GV  REGP+   L  RG     +  +
Sbjct: 206 GEKGECGVPWREGRVWRPLERRASVASPGQKGECGVPWREGPVWRPLERRGS--VASPGE 263

Query: 66  LGHCPSPAWNNYSGM---MDIGVAPSRVGPSGHCGV 98
            G C  P W    G+   ++   + +  G  G CGV
Sbjct: 264 KGECGVP-WTE-GGVWRPLERRASVASPGEKGECGV 297


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 32.3 bits (72), Expect = 0.37
 Identities = 37/122 (30%), Positives = 45/122 (36%), Gaps = 24/122 (19%)

Query: 86  APSRVGPSGHCGVLRSHSRPGELAVVMNHKVPRHRPVSSVGTELLWVRCAPKMVQLPICC 145
           AP+R GP+G     R   RPG  A     + P   P     T L   R  P    L +C 
Sbjct: 142 APARTGPAGKAAADRG--RPGPAAGRRVRRSPSFPPFLLAQTRL--GRTGP----LALCL 193

Query: 146 LLLTPAPGIGPRAHGHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEG 205
           LLL          HG +        L  G+RE       G A + GRG   R   +E  G
Sbjct: 194 LLLL---------HGAMR-------LGGGSREKLACGRAGRAARTGRGEGGRRAEEEAAG 237

Query: 206 PR 207
            R
Sbjct: 238 RR 239


>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
           sapiens]
          Length = 1386

 Score = 32.0 bits (71), Expect = 0.48
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 169 RGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKE--GEGPRGP---CVVRAGGVGWGTRQ 223
           RGLP GT+   + + +G   QEG GA   +  +    E P GP     V  GG G  +  
Sbjct: 732 RGLPPGTQIQIKVQAQG---QEGLGAESLSVTRSIPEEAPSGPPQGVAVALGGDGNSSIT 788

Query: 224 VAGEPPL 230
           V+ EPPL
Sbjct: 789 VSWEPPL 795


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 1   MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC 60
           +PG  G  G+  V   PGR G +E  +    P  L G  G+A  +G          +G  
Sbjct: 571 LPGLPGFKGDKGVPGKPGREG-TEGKKGEAGPPGLPGPPGIAGPQG---------SQGER 620

Query: 61  QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPG 106
            A  ++G           G M     P   GP G  G+  +   PG
Sbjct: 621 GADGEVGQKGDQGHPGVPGFMG---PPGNPGPPGADGIAGAAGPPG 663


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 167 ETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEG 205
           E  G   G  E ++ EGEGE  +EG G     + +EGEG
Sbjct: 884 EGEGEEEGEGEGEEEEGEGEGEEEGEG---EGEEEEGEG 919



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 167 ETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEG 205
           E  G   G  E ++ EGEG+  +EG       + +EGEG
Sbjct: 901 EGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEG 939



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 174 GTRESQQAEGEGEAIQEGRGACKRAQRKEGEG 205
           G  E ++ EGEGE  +EG G     + +EGEG
Sbjct: 874 GEGEGEEEEGEGEGEEEGEG---EGEEEEGEG 902



 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 174 GTRESQQAEGEGEAIQEGRGACKRAQRKEGEG 205
           G  E ++ EGEGE  +EG G     +  EGEG
Sbjct: 953 GEWEGEEEEGEGEGEEEGEG---EGEEGEGEG 981



 Score = 27.7 bits (60), Expect = 9.1
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 174 GTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQ 223
           G  E ++ EGEGE  +EG G  +     EGE   G       G G G  +
Sbjct: 867 GEEEGEEGEGEGEE-EEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEE 915


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 1   MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC 60
           +PG  GL G++    GPG A   + ++     + L G  G     G     L+G  KG  
Sbjct: 416 LPGPQGLRGDVG-DRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSG-----LVGP-KGES 468

Query: 61  QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPG 106
            +  +LG   +   N  SG+  +   P  +G  G  GV     +PG
Sbjct: 469 GSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPG 514


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 1    MPGRTGLAGEMPVGWGPGRAGASEPNESTCAPEALDGHLGVARREGPILGTLLGRGKGHC 60
            +PG  G  G+  V   PGR G +E  +    P  L G  G+A  +G          +G  
Sbjct: 1124 LPGLPGFKGDKGVPGKPGREG-TEGKKGEAGPPGLPGPPGIAGPQG---------SQGER 1173

Query: 61   QALSQLGHCPSPAWNNYSGMMDIGVAPSRVGPSGHCGVLRSHSRPG 106
             A  ++G           G M     P   GP G  G+  +   PG
Sbjct: 1174 GADGEVGQKGDQGHPGVPGFMG---PPGNPGPPGADGIAGAAGPPG 1216


>gi|18860857 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860855 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860851 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860849 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860853 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860839 menin isoform 1 [Homo sapiens]
          Length = 615

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 464 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 523

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 524 PGTVAGT 530


>gi|18860847 menin isoform 2 [Homo sapiens]
          Length = 610

 Score = 31.2 bits (69), Expect = 0.82
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 175 TRESQQAEGE---GEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAGEPPLV 231
           +RE++ AE E   GE  +EGR    R + K  E P         G+G G   V+G P   
Sbjct: 459 SREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKP 518

Query: 232 DCSTAGT 238
             + AGT
Sbjct: 519 PGTVAGT 525


>gi|146219841 PNMA-like 2 [Homo sapiens]
          Length = 635

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 148 LTPAPGIGPRAHGHLHTNLETRGLPRGTRESQQAEGEGEAIQE-----------GRGACK 196
           LTPA G  P A G   T    RG  RG    ++A   G A  +           G GA  
Sbjct: 545 LTPA-GAPPTASGARKTRAGGRGRGRGVTPEKKAGSRGSAQDDAAGSRKKKGSAGAGAHA 603

Query: 197 RAQRKEGEGPRGPCVVRAGGVGWGTR 222
           RA   +G+ P G    R      G R
Sbjct: 604 RAGEAKGQAPTGSKAARGKKARRGRR 629


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 172 PRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAG 226
           PRG     Q  G G A +  RGA   AQ++ G G RG    R G VG G R+  G
Sbjct: 482 PRGRAGYSQRGGPGSA-RGVRGARGGAQQQRGRGVRGARGGRGGNVG-GKRKADG 534


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 172 PRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWGTRQVAG 226
           PRG     Q  G G A +  RGA   AQ++ G G RG    R G VG G R+  G
Sbjct: 517 PRGRAGYSQRGGPGSA-RGVRGARGGAQQQRGRGVRGARGGRGGNVG-GKRKADG 569


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 173 RGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGPCVVRAGGVGWG 220
           R    S    G+ +    GRG+ +R  R++  GP  P     G   WG
Sbjct: 15  RARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWG 62


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 167 ETRGLPRGTRESQQAEGEG-EAIQEGRGACKRAQRKEGEGPRGPCVVRAGG-VGWGT 221
           ETR L  G   S   +G+G E ++E +G  + +Q   G G     VV +GG  G+GT
Sbjct: 136 ETRSLSPGAASSSSGDGDGKEGLEEPKGP-RGSQGGGGGGSSSSSVVSSGGDEGYGT 191


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 167 ETRGLPRGTRESQQAEGEG-EAIQEGRGACKRAQRKEGEGPRGPCVVRAGG-VGWGT 221
           ETR L  G   S   +G+G E ++E +G  + +Q   G G     VV +GG  G+GT
Sbjct: 136 ETRSLSPGAASSSSGDGDGKEGLEEPKGP-RGSQGGGGGGSSSSSVVSSGGDEGYGT 191


>gi|222537754 hypothetical protein LOC375337 [Homo sapiens]
          Length = 1692

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 151 APGIGPRAHGHLHTNLETRGLPRGTRESQQAEGEGEAIQEGRGACKRAQRKEGEGPRGP 209
           A G GP A G      + R + R T    + E +      G G   +A R++ EG RGP
Sbjct: 33  AGGCGPEAGGCRENKQKRRMVARATPGRGEVESDKSVAASGAG---KAARRQVEGRRGP 88


>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
          Length = 1822

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 133 RCAPKMVQLPICCLLLTPAPGIGPRAHGHLHTNLETRGLP--RGTRESQQAEGEGEAIQE 190
           + A  + +LP+      PAP   P     +H +      P  +G  +S+   G+ E++QE
Sbjct: 901 KAAASLAELPLPTP--PPAPPPEPEKEKEIHQSHVASKTPTAKGKPQSEAPHGKQESLQE 958

Query: 191 GRGACKRAQRKEGEGPRG 208
           G+G       K    P+G
Sbjct: 959 GKGKKGETALKRKGSPKG 976


>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
          Length = 193

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 33/116 (28%), Positives = 40/116 (34%), Gaps = 18/116 (15%)

Query: 15  WG-PGRAGASEPNESTCAPEALDGHLG----VARREGPILGTLLGRGKGHCQALSQLGHC 69
           WG PGR  A  P    C P       G     A R GP       R + H +  +  G C
Sbjct: 30  WGSPGRPAAHSP--WACGPPHWGPQRGPRNAAAARPGP-------RSRWHKRCAAACGAC 80

Query: 70  PSPAWNNY----SGMMDIGVAPSRVGPSGHCGVLRSHSRPGELAVVMNHKVPRHRP 121
             P  +      +G    GVA S +GP        + SRPG  A       P   P
Sbjct: 81  ARPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPCSAQSRPGWCAGPRRRHAPGTEP 136


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 31/116 (26%), Positives = 38/116 (32%), Gaps = 20/116 (17%)

Query: 2   PGRTGLAGEMPVGWGPGRAGASEPN--------ESTCAPEALDGHLGVARREGPILGTLL 53
           PG  G  G+      PG+AG   P           T     + GH G    +G       
Sbjct: 245 PGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDG------- 297

Query: 54  GRGKGHCQALSQLGHCPSPAWNNYSGMMDIGVAP---SRVGPSGHCGVLRSHSRPG 106
              KG   A    G   SP  N   G M     P    R GP+G  G   +  +PG
Sbjct: 298 --AKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPG 351


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,736,802
Number of Sequences: 37866
Number of extensions: 646825
Number of successful extensions: 2318
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2228
Number of HSP's gapped (non-prelim): 160
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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