Guide to the Human Genome
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Name: LOC100289511 Sequence: fasta or formatted (122aa) NCBI GI: 239750674
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {122aa} PREDICTED: hypothetical protein XP_002343349
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         12           2
 C cysteine            2.5          3           1
 D aspartate           1.6          2           1
 E glutamate           4.9          6           1
 F phenylalanine       1.6          2           1
 G glycine             5.7          7           2
 H histidine           2.5          3           1
 I isoleucine          2.5          3           1
 K lysine              5.7          7           1
 L leucine             9.8         12           2
 M methionine          1.6          2           1
 N asparagine          3.3          4           1
 P proline            14.8         18           2
 Q glutamine           4.1          5           1
 R arginine            9.8         12           2
 S serine              9.0         11           1
 T threonine           6.6          8           1
 V valine              3.3          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294054          1.000   PREDICTED: hypothetical protein 
LOC100289511          1.000   PREDICTED: hypothetical protein XP_002343349 
LZTS2                 0.031   leucine zipper, putative tumor suppressor 2 
MAP3K13               0.027   mitogen-activated protein kinase kinase kinase 13 [Ho...
LOC100128142          0.022   PREDICTED: hypothetical protein 
LOC100128142          0.022   PREDICTED: similar to RIKEN cDNA E130309D14 
ABCB10                0.018   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100292280          0.018   PREDICTED: hypothetical protein 
LOC100292818          0.018   PREDICTED: hypothetical protein 
LOC100290478          0.018   PREDICTED: hypothetical protein XP_002347965 
LOC100290830          0.018   PREDICTED: hypothetical protein XP_002346568 
LOC100287986          0.018   PREDICTED: hypothetical protein XP_002343659 
LOC100289598          0.018   PREDICTED: hypothetical protein XP_002342405 
LOC646509             0.018   PREDICTED: hypothetical protein 
PRRC1                 0.018   proline-rich coiled-coil 1 
SCAF1                 0.018   SR-related CTD-associated factor 1 
RLTPR                 0.018   RGD motif, leucine rich repeats, tropomodulin domain...
COL3A1                0.013   collagen type III alpha 1 preproprotein 
LOC100293381          0.013   PREDICTED: hypothetical protein 
LOC100291683          0.013   PREDICTED: hypothetical protein XP_002345694 
LOC100289236          0.013   PREDICTED: hypothetical protein 
LOC100294483          0.013   PREDICTED: hypothetical protein 
LOC100289236          0.013   PREDICTED: hypothetical protein XP_002344279 
PCNT                  0.013   pericentrin 
MYO16                 0.013   myosin heavy chain Myr 8 
LOC100293404          0.013   PREDICTED: hypothetical protein 
ANKRD33B              0.013   PREDICTED: ankyrin repeat domain 33B 
LOC100291131          0.013   PREDICTED: hypothetical protein XP_002346641 
BSDC1                 0.013   BSD domain containing 1 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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