Guide to the Human Genome
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Name: LOC100293381 Sequence: fasta or formatted (98aa) NCBI GI: 239755190
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          7           1
 C cysteine            3.1          3           1
 D aspartate           6.1          6           1
 E glutamate           5.1          5           1
 F phenylalanine       4.1          4           1
 G glycine            10.2         10           2
 H histidine           3.1          3           1
 I isoleucine          5.1          5           1
 K lysine              2.0          2           1
 L leucine             5.1          5           1
 M methionine          1.0          1           1
 N asparagine          3.1          3           1
 P proline            12.2         12           1
 Q glutamine          10.2         10           2
 R arginine            7.1          7           1
 S serine              7.1          7           1
 T threonine           5.1          5           1
 V valine              2.0          2           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289236          1.000   PREDICTED: hypothetical protein 
LOC100289236          1.000   PREDICTED: hypothetical protein XP_002344279 
RBM20                 0.038   RNA binding motif protein 20 
MEF2D                 0.032   myocyte enhancer factor 2D 
EMR1                  0.022   egf-like module containing, mucin-like, hormone rece...
LOC100294054          0.016   PREDICTED: hypothetical protein 
LOC100289511          0.016   PREDICTED: hypothetical protein 
LOC100289511          0.016   PREDICTED: hypothetical protein XP_002343349 
LIMCH1                0.016   LIM and calponin homology domains 1 isoform a [Homo...
HSN2                  0.016   hereditary sensory neuropathy, type II 
DACT1                 0.016   dapper 1 isoform 2 
DACT1                 0.016   dapper 1 isoform 1 
LOC100170229          0.011   hypothetical protein LOC100170229 
NEDD9                 0.011   neural precursor cell expressed, developmentally do...
NEDD9                 0.011   neural precursor cell expressed, developmentally down...
LOC100292234          0.011   PREDICTED: hypothetical protein 
LOC100290708          0.011   PREDICTED: hypothetical protein XP_002346660 
LOC653348             0.011   PREDICTED: similar to ADAMTS-like 2 
LOC100288955          0.011   PREDICTED: hypothetical protein XP_002342507 
CYS1                  0.011   cystin 1 
ADAMTSL2              0.005   ADAMTS-like 2 precursor 
ADAMTSL2              0.005   ADAMTS-like 2 precursor 
CLIC6                 0.005   chloride intracellular channel 6 
C1orf113              0.005   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.005   SH3 domain-containing protein C1orf113 isoform 2 [H...
LOC100293212          0.005   PREDICTED: hypothetical protein 
LOC100289796          0.005   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.005   PREDICTED: hypothetical protein XP_002342329 
LOC100134663          0.005   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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