Guide to the Human Genome
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Name: LOC121906 Sequence: fasta or formatted (272aa) NCBI GI: 239750562
Description:

PREDICTED: similar to hCG30646

Not currently referenced in the text

Other entries for this name:
alt mRNA {272aa} PREDICTED: similar to hCG30646
alt mRNA {272aa} PREDICTED: similar to hCG30646
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         20           2
 C cysteine            2.2          6           1
 D aspartate           2.9          8           1
 E glutamate           4.8         13           2
 F phenylalanine       5.9         16           1
 G glycine             6.2         17           2
 H histidine           2.9          8           1
 I isoleucine          5.1         14           2
 K lysine              8.5         23           3
 L leucine             7.7         21           2
 M methionine          1.1          3           1
 N asparagine          4.4         12           1
 P proline             2.6          7           1
 Q glutamine           4.4         12           2
 R arginine            6.2         17           1
 S serine              7.7         21           2
 T threonine           7.0         19           1
 V valine              7.4         20           2
 W tryptophan          1.8          5           1
 Y tyrosine            3.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG30646 
LOC121906             1.000   PREDICTED: similar to hCG30646 
LOC121906             1.000   PREDICTED: similar to hCG30646 
PSMA6                 0.379   proteasome alpha 6 subunit 
PSMA3                 0.066   proteasome alpha 3 subunit isoform 2 
PSMA3                 0.066   proteasome alpha 3 subunit isoform 1 
PSMA7                 0.055   proteasome alpha 7 subunit 
PSMA8                 0.045   proteasome alpha 8 subunit isoform 2 
PSMA2                 0.043   proteasome subunit alpha type 2 
PSMA1                 0.043   proteasome alpha 1 subunit isoform 2 
PSMA1                 0.043   proteasome alpha 1 subunit isoform 1 
PSMA1                 0.043   proteasome alpha 1 subunit isoform 3 
PSMA4                 0.042   proteasome alpha 4 subunit isoform 1 
PSMA4                 0.042   proteasome alpha 4 subunit isoform 1 
PSMA8                 0.038   proteasome alpha 8 subunit isoform 1 
PSMA8                 0.034   proteasome alpha 8 subunit isoform 3 
PSMA5                 0.032   proteasome alpha 5 subunit 
TRAPPC10              0.006   trafficking protein particle complex 10 
TTC35                 0.006   tetratricopeptide repeat domain 35 
PSMA4                 0.006   proteasome alpha 4 subunit isoform 2 
UBTD2                 0.006   dendritic cell-derived ubiquitin-like protein [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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