Search of human proteins with 239749531

Search of human proteins with 239749531

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749531 PREDICTED: similar to selenoprotein T [Homo
sapiens]
         (137 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens]     287   2e-78
gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens]     287   2e-78
gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens]     287   2e-78
gi|42789380 selenoprotein T [Homo sapiens]                            275   8e-75
gi|42822891 hypothetical protein LOC84299 [Homo sapiens]               35   0.015
gi|14211907 zinc finger protein 347 [Homo sapiens]                     28   2.4  
gi|31657140 insulin receptor-related receptor precursor [Homo sa...    27   5.3  
gi|93102361 palladin [Homo sapiens]                                    27   6.9  
gi|38679905 tripartite motif-containing 65 [Homo sapiens]              27   6.9  
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]         27   6.9  
gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom...    27   6.9  
gi|27436996 potassium voltage-gated channel, subfamily G, member...    26   9.0  
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...    26   9.0  
gi|89886475 hypothetical protein LOC163183 [Homo sapiens]              26   9.0  

>gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  287 bits (735), Expect = 2e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60
           MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 121 NEMKLNVHMDSIPHHRS 137
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  287 bits (735), Expect = 2e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60
           MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 121 NEMKLNVHMDSIPHHRS 137
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens]
          Length = 137

 Score =  287 bits (735), Expect = 2e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60
           MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60

Query: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query: 121 NEMKLNVHMDSIPHHRS 137
           NEMKLNVHMDSIPHHRS
Sbjct: 121 NEMKLNVHMDSIPHHRS 137


>gi|42789380 selenoprotein T [Homo sapiens]
          Length = 195

 Score =  275 bits (703), Expect = 8e-75
 Identities = 133/137 (97%), Positives = 134/137 (97%)

Query: 1   MWVTSQGYPDIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 60
           M V SQ YPDIRIEGENYLPQP+YRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW
Sbjct: 59  MRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIW 118

Query: 61  QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120
           QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD
Sbjct: 119 QWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 178

Query: 121 NEMKLNVHMDSIPHHRS 137
           NEMKLNVHMDSIPHHRS
Sbjct: 179 NEMKLNVHMDSIPHHRS 195


>gi|42822891 hypothetical protein LOC84299 [Homo sapiens]
          Length = 115

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 81  IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 119
           IE++   TGAFEI +N   V+SKLE+G  P  + L++ +
Sbjct: 55  IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93


>gi|14211907 zinc finger protein 347 [Homo sapiens]
          Length = 839

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 8  YPDIRIEGENYLPQPMYRHIASF-LSVFKLVLIGLIIVGKDPFAFFGMQA----PSIWQW 62
          Y D+ +E         YR++AS  +S F L +I ++  GK+PF           P  W+W
Sbjct: 33 YRDVMLEN--------YRNLASLGISCFDLSIISMLEQGKEPFTLESQVQIAGNPDGWEW 84


>gi|31657140 insulin receptor-related receptor precursor [Homo
          sapiens]
          Length = 1297

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 6/25 (24%)

Query: 54 MQAPSIWQWGQENKVYACMMVFFLS 78
          M  PS+W WG      AC+ V FLS
Sbjct: 1  MAVPSLWPWG------ACLPVIFLS 19


>gi|93102361 palladin [Homo sapiens]
          Length = 1106

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 43  IVGKDPFAFFGMQAPSIWQWGQENKVYAC--MMVFFLSNMIENQCMSTGAFEITLNDVPV 100
           ++G D    F +Q P      QE KV +C   ++  +   +E   +     E+   DVPV
Sbjct: 712 LLGADSATVFNIQEPEEETANQEYKVSSCEQRLISEIEYRLERSPVDESGDEVQYGDVPV 771

Query: 101 WSKLESGHLP 110
               E+G  P
Sbjct: 772 ----ENGMAP 777


>gi|38679905 tripartite motif-containing 65 [Homo sapiens]
          Length = 517

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 104 LESGHLPSMQQLVQILDNEMKLNVHMDSIPHH 135
           L S  +   Q L Q  D E +L VH++++  H
Sbjct: 199 LRSIEVAKTQALAQARDEEQRLRVHLEAVARH 230


>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
          Length = 493

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 6   QGYPDIRIEGENYLPQPMYRHIASFLSVFKL 36
           Q  PD  I  E+Y   P Y H +  LSVF L
Sbjct: 410 QCIPDSTIPQEDYRCWPSYHHGSCLLSVFNL 440


>gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Homo
            sapiens]
          Length = 1706

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 53   GMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMS 87
            G QAP +W W  +N+     +  ++ N  ++ C++
Sbjct: 1602 GTQAPLLWPWKLDNRGRRMPLNAYVLNFYKHNCLT 1636


>gi|27436996 potassium voltage-gated channel, subfamily G, member 4
           [Homo sapiens]
          Length = 519

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 61  QWGQENKVYACMMVFFLSNMIENQCMST 88
           Q G   KV+AC+ + F++    + C+ST
Sbjct: 215 QSGLPGKVFACLSILFVATTAVSLCVST 242


>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
           sapiens]
          Length = 327

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 17/93 (18%), Positives = 37/93 (39%)

Query: 34  FKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEI 93
           +K  + G++++ K  +      +   W WG+E+  +   +      +     ++TG    
Sbjct: 196 YKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTF 255

Query: 94  TLNDVPVWSKLESGHLPSMQQLVQILDNEMKLN 126
                P W K +   + + +Q    +D E  LN
Sbjct: 256 RHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLN 288


>gi|89886475 hypothetical protein LOC163183 [Homo sapiens]
          Length = 404

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 10  DIRIEGENYLPQPMYRHIASFLSVFKLVLIGLIIVG 45
           D+R+EG    P P  R   +FL +  L L+ L++VG
Sbjct: 336 DVRLEGNPGAPDPASRQPLTFLLI--LFLLFLLLVG 369


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,269,559
Number of Sequences: 37866
Number of extensions: 201367
Number of successful extensions: 448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 14
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.