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Search of human proteins with 239748481
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748481 PREDICTED: hypothetical protein [Homo sapiens] 409 e-115
gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo ... 407 e-114
gi|239753941 PREDICTED: hypothetical protein [Homo sapiens] 259 1e-69
gi|169168105 PREDICTED: hypothetical protein [Homo sapiens] 34 0.094
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 33 0.21
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.36
gi|169167523 PREDICTED: hypothetical protein [Homo sapiens] 32 0.47
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 31 0.61
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 31 0.61
gi|24475586 ependymin related protein 1 precursor [Homo sapiens] 31 0.61
gi|13376064 zinc finger protein 408 [Homo sapiens] 31 0.79
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 30 1.0
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 30 1.0
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 30 1.0
gi|218563730 chemokine (C-X-C motif) receptor 3 isoform B [Homo ... 30 1.8
gi|4504099 chemokine (C-X-C motif) receptor 3 isoform A [Homo sa... 30 1.8
gi|126722969 centromere protein T [Homo sapiens] 30 1.8
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 30 1.8
gi|239754620 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 30 1.8
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 30 1.8
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens] 29 2.3
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens] 29 2.3
gi|169168280 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 29 2.3
gi|4501945 adrenomedullin [Homo sapiens] 29 3.0
gi|33946327 nucleoporin 214kDa [Homo sapiens] 29 3.0
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] 29 3.0
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
>gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 409 bits (1052), Expect = e-115
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC 60
MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC 60
Query: 61 RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN 120
RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN
Sbjct: 61 RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN 120
Query: 121 ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR 180
ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR
Sbjct: 121 ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR 180
Query: 181 RLLKAELHLIPDHVTASRE 199
RLLKAELHLIPDHVTASRE
Sbjct: 181 RLLKAELHLIPDHVTASRE 199
>gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo
sapiens]
Length = 199
Score = 407 bits (1046), Expect = e-114
Identities = 198/199 (99%), Positives = 198/199 (99%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC 60
MIKSFGCLSGRSATLEAPGTA RGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAERGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTC 60
Query: 61 RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN 120
RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN
Sbjct: 61 RGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVN 120
Query: 121 ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR 180
ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR
Sbjct: 121 ERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKGAEWGRSAGISPAQILKIDEARKR 180
Query: 181 RLLKAELHLIPDHVTASRE 199
RLLKAELHLIPDHVTASRE
Sbjct: 181 RLLKAELHLIPDHVTASRE 199
>gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 259 bits (662), Expect = 1e-69
Identities = 152/227 (66%), Positives = 156/227 (68%), Gaps = 30/227 (13%)
Query: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQ---- 56
MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTR S A SASSQ
Sbjct: 1 MIKSFGCLSGRSATLEAPGTAVRGSIAAEKRGTRSGSQLLRENSG--AARASASSQLKTR 58
Query: 57 -------------PDTCRGTRATLG---DAPSPPFSGSSQPVTPRKLRCGQ---SQRLQP 97
P C G G + P Q V +LR G S P
Sbjct: 59 KENERVWDRRTRAPSQCLGLLKRTGVKENLDPHPEIPREQVVGKPELRVGYPLLSPASSP 118
Query: 98 -----AQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 152
A++ ASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG
Sbjct: 119 YPSAGARERASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEG 178
Query: 153 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 199
WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE
Sbjct: 179 WEWKGAEWGRSAGISPAQILKIDEARKRRLLKAELHLIPDHVTASRE 225
>gi|169168105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 33.9 bits (76), Expect = 0.094
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 16/150 (10%)
Query: 15 LEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGDAPSPP 74
LE+P A G R+WG G PR T A + P T T DAP P
Sbjct: 32 LESPPHPETQRPRAGAGGRRRWG--ATGGEGPRRPATRACADPGTRPFTYRWNRDAPFPG 89
Query: 75 FSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQ 134
S R G+ R + +A+ PL + + R + LW+G + Q
Sbjct: 90 RGRFS-----RTRGDGKRARTEAPSGSAA-------EKPLPVAAADGRLKLQLWRGASPQ 137
Query: 135 LTLFGICLFRSCLLKKEGWEWKGAEWGRSA 164
+ + C ++ L + WK + W + +
Sbjct: 138 VAV--KCFVQTKLQRLLPNRWKQSVWTKES 165
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 32.7 bits (73), Expect = 0.21
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 7 CLSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACA-LGSAPRATPTSASSQPDTCRGTRA 65
C + A PG ++ A G + G AC+ LG P+ TP SA S+P C G R
Sbjct: 73 CAAACGACARPPGHQLQPPGA----GAPQPGVACSYLGPRPQRTPCSAQSRPGWCAGPRR 128
Query: 66 TLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQP 97
P + P P + RL P
Sbjct: 129 RHAPGTEPHVAPGRAP--PPRAGASPGSRLLP 158
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.0 bits (71), Expect = 0.36
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 15 LEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRA--TLGDAPS 72
L A G R +A G G A SAPRA PT S P + RG RA +P
Sbjct: 47 LGAAGAVGRKPLAERAGGI---GGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPG 103
Query: 73 PPFSGSSQPVTPRKLRCGQSQRLQPAQDTASFG 105
P S T R GQ A++T + G
Sbjct: 104 PVSSPGRASGTTRPGPLGQKGLRISAEETVARG 136
>gi|169167523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 0.47
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 15 LEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGDAPSPP 74
LE+P A G R+WG G PR T A + P T T DAP P
Sbjct: 32 LESPPHPETQRPRAGAGGRRRWG--ATGGEGPRRPATRACADPGTRPFTYRWNRDAPFPG 89
Query: 75 FSGSSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQ 134
S R G+ R + +A+ PL + R + LW+G + Q
Sbjct: 90 RGRFS-----RTRGDGKRARTEAPSGSAA-------EKPLPGAAADGRLKLRLWRGASPQ 137
Query: 135 LTLFGICLFRSCLLKKEGWEWKGAEWGRSA 164
+ + C ++ L + WK + W + +
Sbjct: 138 VAV--KCFVQTKLQRLLPNRWKQSVWTKES 165
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 31.2 bits (69), Expect = 0.61
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 10 GRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGD 69
G A PG R + A G RK +GSAP A S RG +A +G
Sbjct: 146 GGGARAPGPGPGSRQPLPAGLHGRRK------VGSAPDRHGLGAGSAG--ARGNKAVVGP 197
Query: 70 APSPPFSGSSQPVTPRKLRCGQSQRL 95
+P PP R+L G RL
Sbjct: 198 SPPPP---------GRRLHSGSESRL 214
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 31.2 bits (69), Expect = 0.61
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 10 GRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGD 69
G A PG R + A G RK +GSAP A S RG +A +G
Sbjct: 146 GGGARAPGPGPGSRQPLPAGLHGRRK------VGSAPDRHGLGAGSAG--ARGNKAVVGP 197
Query: 70 APSPPFSGSSQPVTPRKLRCGQSQRL 95
+P PP R+L G RL
Sbjct: 198 SPPPP---------GRRLHSGSESRL 214
>gi|24475586 ependymin related protein 1 precursor [Homo sapiens]
Length = 344
Score = 31.2 bits (69), Expect = 0.61
Identities = 54/201 (26%), Positives = 77/201 (38%), Gaps = 45/201 (22%)
Query: 25 SIAAEKR-GTRKWGWACALGSAP-----RATPTSASSQPDTCRGTRATLGDAPSPPFSGS 78
++++E R G R+W A A GS P RA S GTRA SGS
Sbjct: 18 AVSSENRSGRRQWQQAVAAGSGPGRNSSRAIHWSLPRALVPATGTRA----------SGS 67
Query: 79 SQPVTPRKLRCGQSQRLQPAQDTASFGHSH----RFSSPLILHLVNERFRRSLWKG---- 130
+ P K + R G SH R S+PL L L + R R + G
Sbjct: 68 QKRQRPPKGQEALWSRPHSRHSAERAGGSHSDPGRLSAPLGLGLPSGRGRLTAMPGRAPL 127
Query: 131 ------INSQL-------TLFGICLF------RSCLLKKEGWEWKGAEWGRSAGISPAQI 171
+ + L TL G+C R C ++ WE + + +S+G + +
Sbjct: 128 RTVPGALGAWLLGGLWAWTLCGLCSLGAVGAPRPCQAPQQ-WEGRQVMYQQSSGRNSRAL 186
Query: 172 LKIDEARKR-RLLKAELHLIP 191
L D +R R+L LIP
Sbjct: 187 LSYDGLNQRVRVLDERKALIP 207
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 30.8 bits (68), Expect = 0.79
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 8 LSGRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAP--RATPTSASSQPDTCRGTRA 65
L SAT + P + S ++ RGT+ G+ +P + P + + +P +
Sbjct: 275 LQSNSATQQDPDGS-GASFSSSARGTQPHGYLAKKLHSPSDQCPPRAKTPEPGAQQSGFP 333
Query: 66 TLGDAPSPPFSGSSQPVTPRKLRCGQ 91
TL + SPP S P R+ RCG+
Sbjct: 334 TL--SRSPPGPAGSSPKQGRRYRCGE 357
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 44 SAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTA 102
SA P+SAS+ P+T P+PP S + Q T + S A DT+
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTS 323
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 44 SAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTA 102
SA P+SAS+ P+T P+PP S + Q T + S A DT+
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTS 323
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 44 SAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQPAQDTA 102
SA P+SAS+ P+T P+PP S + Q T + S A DT+
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAPDTS 323
>gi|218563730 chemokine (C-X-C motif) receptor 3 isoform B [Homo
sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 89 CGQSQRLQPAQD-TASFGHSHRFSSPLILHLVNERFRRSLW 128
CG+ R+ A+ T+ G+ H +PL+ V +FR +W
Sbjct: 337 CGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMW 377
>gi|4504099 chemokine (C-X-C motif) receptor 3 isoform A [Homo
sapiens]
Length = 368
Score = 29.6 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 89 CGQSQRLQPAQD-TASFGHSHRFSSPLILHLVNERFRRSLW 128
CG+ R+ A+ T+ G+ H +PL+ V +FR +W
Sbjct: 290 CGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMW 330
>gi|126722969 centromere protein T [Homo sapiens]
Length = 561
Score = 29.6 bits (65), Expect = 1.8
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 10 GRSATLEAPGTAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTR--ATL 67
G + EA G+ +G+ A+ G G A G A A+P SASS P++ + R L
Sbjct: 363 GHTEVTEAEGS--QGTAEADGPGASS-GDEDASGRA--ASPESASSTPESLQARRHHQFL 417
Query: 68 GDAPSPPFSG-SSQPVTPRKLRCGQSQRL---QPAQDTASFGHSH 108
AP+P + SS+P P +R R +P QD G SH
Sbjct: 418 EPAPAPGAAVLSSEPAEPLLVRHPPRPRTTGPRPRQDPHKAGLSH 462
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 42 LGSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPR-KLRCGQSQRLQPAQD 100
L P +P S +P + + +AP P S +P P+ K+R +S R+ P
Sbjct: 1061 LAPPPLLSPLLPSIKPTVRKTRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFPA 1120
Query: 101 TASFGHSHRFSS 112
T++ H +S
Sbjct: 1121 TSAAPEPHPSTS 1132
>gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 551
Score = 29.6 bits (65), Expect = 1.8
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 17 APGTAVRGSIAA----EKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATL--GDA 70
APG R + A RG CALG R + + +QP RA L
Sbjct: 354 APGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVAT-WRAVLPRTPP 412
Query: 71 PSPPFS-GSSQPVTPRKLRCGQSQRLQPA 98
PSPP S G P P + GQ+Q L+ A
Sbjct: 413 PSPPGSQGRQGPEPPSPV--GQAQALEEA 439
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 29.6 bits (65), Expect = 1.8
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 9 SGRSAT-LEAPGTAVRGSIAA-EKRGTRKWGWACALGSAP-----RATPTSASSQPDTC- 60
S RSA+ +E PG A+ +A E R R G L +P + P +++P
Sbjct: 613 SERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSW 672
Query: 61 ---RGTRATLGDAPSPPFSGSSQPVTPRK 86
+ + A G APSPP GS +P K
Sbjct: 673 IHGKHSAAAAGRAPSPPPPGSEAAPSPSK 701
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 29.6 bits (65), Expect = 1.8
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 9 SGRSAT-LEAPGTAVRGSIAA-EKRGTRKWGWACALGSAP-----RATPTSASSQPDTC- 60
S RSA+ +E PG A+ +A E R R G L +P + P +++P
Sbjct: 608 SERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSW 667
Query: 61 ---RGTRATLGDAPSPPFSGSSQPVTPRK 86
+ + A G APSPP GS +P K
Sbjct: 668 IHGKHSAAAAGRAPSPPPPGSEAAPSPSK 696
>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
Length = 409
Score = 29.3 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 43 GSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKL 87
G AP+ TP S P +PS FS SSQ P L
Sbjct: 357 GGAPKNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQAEVPPSL 401
>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
Length = 410
Score = 29.3 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 43 GSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKL 87
G AP+ TP S P +PS FS SSQ P L
Sbjct: 358 GGAPKNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQAEVPPSL 402
>gi|169168280 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 29.3 bits (64), Expect = 2.3
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 38 WACALGSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKLRCGQSQRLQP 97
W G PR T A + P T T DAP P S R G+ R +
Sbjct: 4 WGATGGEGPRRPATRACADPGTRPFTYRWNRDAPFPGRGRFS-----RTRGDGKRARTEA 58
Query: 98 AQDTASFGHSHRFSSPLILHLVNERFRRSLWKGINSQLTLFGICLFRSCLLKKEGWEWKG 157
+A+ PL + R + LW+G + Q+ + C ++ L + WK
Sbjct: 59 PSGSAA-------EKPLPGAAADGRLKLRLWRGASPQVAV--KCFVQTKLQRLLPNRWKQ 109
Query: 158 AEWGRSA 164
+ W + +
Sbjct: 110 SVWTKES 116
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 40 CALGSAPRATPTS-ASSQPDTCRGTRATLGDAPSPPFSGSSQPVTP 84
C PR + TS AS+ P G G A SPP SS+P +P
Sbjct: 140 CPAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSSRPPSP 185
>gi|4501945 adrenomedullin [Homo sapiens]
Length = 185
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 78 SSQPVTPRKLRCGQSQRLQPAQDTASFGHSHRFSSPLILHLVNERFRRSL--WKGINSQL 135
SS P ++ G +Q L QD S SSP + +R+R+S+ ++G+ S
Sbjct: 50 SSYPTGLADVKAGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRS-- 107
Query: 136 TLFGICLFRSCLLKK 150
FG C F +C ++K
Sbjct: 108 --FG-CRFGTCTVQK 119
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 28.9 bits (63), Expect = 3.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 20 TAVRGSIAAEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSS 79
TA +G+ + K ++ ++ GS P SS P G + P P + SS
Sbjct: 1237 TAAQGATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPS---GITSASNTTPGEPAASSS 1293
Query: 80 QPVTP 84
+PV P
Sbjct: 1294 RPVAP 1298
>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 39 ACALGS--APRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQ 80
A LGS AP+AT +A+++ T + R L APS PF G +Q
Sbjct: 432 ATGLGSKEAPKATAETAATKTATLQ-PRVNLQPAPSSPFLGPAQ 474
>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 145 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 183
+CL K GW + G +W R G+ P Q L + EA R+L
Sbjct: 25 TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 28.9 bits (63), Expect = 3.0
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 28 AEKRGTRKWGWACALGSAPRATPTSASSQPDTCRGTRATLGDAPSPPFSGSSQPVTPRKL 87
A ++G R WGW+ + A P G+RA AP+P +S P +P
Sbjct: 101 AREKGGRGWGWSTPTANPRLCREARACGGP----GSRARTPAAPAPLWS-LPMPTSPLPP 155
Query: 88 RC-GQSQRLQPAQDTASFG 105
GQ Q +P D+A G
Sbjct: 156 GVGGQPQLGKPTVDSAWSG 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,386,564
Number of Sequences: 37866
Number of extensions: 386304
Number of successful extensions: 2126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 362
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.