Guide to the Human Genome
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Name: LOC100130172 Sequence: fasta or formatted (173aa) NCBI GI: 169168105
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {173aa} PREDICTED: hypothetical protein
alt prot {124aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         19           3
 C cysteine            1.7          3           1
 D aspartate           2.3          4           1
 E glutamate           6.9         12           2
 F phenylalanine       3.5          6           2
 G glycine            11.6         20           2
 H histidine           0.6          1           1
 I isoleucine          0.0          0           0
 K lysine              5.2          9           1
 L leucine             6.9         12           2
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             9.2         16           2
 Q glutamine           4.6          8           1
 R arginine           13.3         23           3
 S serine              5.2          9           1
 T threonine           6.4         11           1
 V valine              5.2          9           1
 W tryptophan          3.5          6           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130172          0.988   PREDICTED: hypothetical protein 
LOC100130172          0.689   PREDICTED: hypothetical protein 
LOC339192             0.050   PREDICTED: hypothetical protein 
LOC339192             0.044   PREDICTED: hypothetical protein 
LOC339192             0.044   PREDICTED: hypothetical protein 
LOC100292443          0.036   PREDICTED: hypothetical protein 
LOC100287774          0.036   PREDICTED: hypothetical protein XP_002342517 
KLF1                  0.030   Kruppel-like factor 1 (erythroid) 
ZNF716                0.030   PREDICTED: zinc finger protein 716 
LOC339742             0.027   PREDICTED: hypothetical protein 
LOC100287688          0.027   PREDICTED: hypothetical protein XP_002342270 
LOC100287774          0.027   PREDICTED: hypothetical protein 
LOC100288925          0.027   PREDICTED: hypothetical protein XP_002342218 
MAP3K12               0.024   mitogen-activated protein kinase kinase kinase 12 [H...
LOC338758             0.024   PREDICTED: hypothetical protein 
LOC338758             0.024   PREDICTED: hypothetical protein 
LOC338758             0.024   PREDICTED: hypothetical protein 
SHANK3                0.024   SH3 and multiple ankyrin repeat domains 3 
LOC100292378          0.024   PREDICTED: hypothetical protein 
LOC643355             0.024   PREDICTED: hypothetical protein 
LOC388079             0.024   PREDICTED: similar to hCG2042704 
RPH3A                 0.024   rabphilin 3A homolog isoform 1 
RPH3A                 0.024   rabphilin 3A homolog isoform 2 
PPP1R12C              0.024   protein phosphatase 1, regulatory subunit 12C 
ZC3H3                 0.024   zinc finger CCCH-type containing 3 
RAB11FIP3             0.024   rab11-family interacting protein 3 isoform 1 
LOC100287343          0.024   PREDICTED: hypothetical protein XP_002343155 
ZNF318                0.024   zinc finger protein 318 
DENND2A               0.021   DENN/MADD domain containing 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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