Search of human proteins with 239747330

Search of human proteins with 239747330

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
VIIb [Homo sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit ...   168   1e-42
gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit ...   168   1e-42
gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo sap...   138   1e-33
gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]        127   2e-30
gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit ...   115   8e-27
gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo ...   115   8e-27
gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo ...   115   8e-27
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide...    28   1.6  
gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo sap...    26   7.8  
gi|239750988 PREDICTED: hypothetical protein XP_002347624 isofor...    26   7.8  

>gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  168 bits (425), Expect = 1e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
          GIEWNLSPDGRVTPKEWRDQ
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  168 bits (425), Expect = 1e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
          GIEWNLSPDGRVTPKEWRDQ
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo
          sapiens]
          Length = 80

 Score =  138 bits (347), Expect = 1e-33
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLV++ L+ LQV+SI QT+ARQSHQK TPDFHDKY NAVLASGATF I  WTYVATQ+
Sbjct: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
          GIEWNLSP GRVTPKEWR+Q
Sbjct: 61 GIEWNLSPVGRVTPKEWRNQ 80


>gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]
          Length = 81

 Score =  127 bits (319), Expect = 2e-30
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPL  N LS L++QSILQ++AR SH KH+PDFHDKY NAVLASG  F +A W + ATQI
Sbjct: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
          GIEWNLSP GRVTPKEW+ Q
Sbjct: 62 GIEWNLSPVGRVTPKEWKHQ 81


>gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  115 bits (288), Expect = 8e-27
 Identities = 59/80 (73%), Positives = 64/80 (80%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLV+N+LSHL V SI QT+ARQSHQK   DFHDK  NAVLASG T  IAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
           I+ NLS  GRVT K+WRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo
          sapiens]
          Length = 80

 Score =  115 bits (288), Expect = 8e-27
 Identities = 59/80 (73%), Positives = 64/80 (80%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLV+N+LSHL V SI QT+ARQSHQK   DFHDK  NAVLASG T  IAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
           I+ NLS  GRVT K+WRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo
          sapiens]
          Length = 80

 Score =  115 bits (288), Expect = 8e-27
 Identities = 59/80 (73%), Positives = 64/80 (80%)

Query: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
          MFPLV+N+LSHL V SI QT+ARQSHQK   DFHDK  NAVLASG T  IAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPDGRVTPKEWRDQ 80
           I+ NLS  GRVT K+WRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
           [Homo sapiens]
          Length = 1634

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 3   PLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASG 45
           P   N L HLQ + + QTI+RQ+       +H++    +LA G
Sbjct: 481 PSTLNYLVHLQERPVKQTISRQALSLLFDTYHNEVDAFLLADG 523


>gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 68

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 53 WTYVATQIGIEWNLSPDGRVTPKEW 77
          W+ +  + G EW +S DG   P EW
Sbjct: 20 WSIMLMEWGAEWGISADG-AGPMEW 43


>gi|239750988 PREDICTED: hypothetical protein XP_002347624 isoform
          2 [Homo sapiens]
          Length = 68

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 53 WTYVATQIGIEWNLSPDGRVTPKEW 77
          W+ +  + G EW +S DG   P EW
Sbjct: 20 WSIMLMEWGAEWGISADG-AGPMEW 43


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.129    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,039,734
Number of Sequences: 37866
Number of extensions: 90964
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 12
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.