Guide to the Human Genome
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Name: LOC100133124 Sequence: fasta or formatted (80aa) NCBI GI: 239747330
Description:

PREDICTED: similar to cytochrome c oxidase subunit VIIb

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt mRNA [80aa] PREDICTED: similar to cytochrome c oxidase subunit VIIb
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5          6           1
 C cysteine            0.0          0           0
 D aspartate           5.0          4           1
 E glutamate           3.8          3           1
 F phenylalanine       3.8          3           1
 G glycine             3.8          3           1
 H histidine           5.0          4           1
 I isoleucine          6.2          5           1
 K lysine              3.8          3           1
 L leucine             7.5          6           1
 M methionine          1.2          1           1
 N asparagine          3.8          3           1
 P proline             5.0          4           1
 Q glutamine           8.8          7           1
 R arginine            3.8          3           1
 S serine              8.8          7           1
 T threonine           8.8          7           1
 V valine              7.5          6           1
 W tryptophan          3.8          3           1
 Y tyrosine            2.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to cytochrome c oxidase subunit ... 
LOC100133124          1.000   PREDICTED: similar to cytochrome c oxidase subunit ...
COX7B                 0.790   cytochrome c oxidase subunit VIIb precursor 
COX7B2                0.713   cytochrome c oxidase subunit VIIb2 
LOC100293691          0.629   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290858          0.629   PREDICTED: hypothetical protein XP_002347657 
LOC100287509          0.629   PREDICTED: hypothetical protein XP_002342160 
PIK3C2B               0.021   phosphoinositide-3-kinase, class 2 beta polypeptide...
LOC100292207          0.007   PREDICTED: hypothetical protein isoform 2 
LOC100290784          0.007   PREDICTED: hypothetical protein XP_002347624 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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