Guide to the Human Genome
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Name: LOC100293691 Sequence: fasta or formatted (80aa) NCBI GI: 239752959
Description:

PREDICTED: similar to cytochrome c oxidase subunit VIIb

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          5           1
 C cysteine            1.2          1           1
 D aspartate           6.2          5           1
 E glutamate           0.0          0           0
 F phenylalanine       2.5          2           1
 G glycine             5.0          4           1
 H histidine           5.0          4           1
 I isoleucine          7.5          6           1
 K lysine              7.5          6           2
 L leucine             7.5          6           1
 M methionine          2.5          2           1
 N asparagine          3.8          3           1
 P proline             2.5          2           1
 Q glutamine           6.2          5           1
 R arginine            5.0          4           1
 S serine              8.8          7           1
 T threonine           8.8          7           1
 V valine              8.8          7           1
 W tryptophan          3.8          3           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to cytochrome c oxidase subunit ... 
LOC100290858          1.000   PREDICTED: hypothetical protein XP_002347657 
LOC100287509          1.000   PREDICTED: hypothetical protein XP_002342160 
COX7B                 0.648   cytochrome c oxidase subunit VIIb precursor 
LOC100133124          0.634   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100133124          0.634   PREDICTED: similar to cytochrome c oxidase subunit ...
COX7B2                0.535   cytochrome c oxidase subunit VIIb2 
MVP                   0.021   major vault protein 
MVP                   0.021   major vault protein 
PIK3C2B               0.014   phosphoinositide-3-kinase, class 2 beta polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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