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Search of human proteins with 239747218
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747218 PREDICTED: hypothetical protein XP_002346942 [Homo
sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747218 PREDICTED: hypothetical protein XP_002346942 [Homo ... 518 e-147
gi|239752681 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo ... 394 e-110
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 42 4e-04
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 42 4e-04
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 42 6e-04
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 41 0.001
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 40 0.002
gi|13994372 keratin associated protein 17-1 [Homo sapiens] 40 0.002
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 40 0.002
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 39 0.003
gi|60099478 keratin associated protein 5-6 [Homo sapiens] 39 0.004
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 39 0.005
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.020
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 37 0.020
gi|163965366 nascent polypeptide-associated complex alpha subuni... 36 0.027
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.035
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 35 0.078
gi|193788697 hypothetical protein LOC140688 [Homo sapiens] 34 0.13
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 33 0.30
gi|13027594 zinc finger protein 747 [Homo sapiens] 33 0.30
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 32 0.39
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 32 0.39
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 32 0.39
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 32 0.39
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 0.39
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 0.39
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 0.39
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 32 0.39
>gi|239747218 PREDICTED: hypothetical protein XP_002346942 [Homo
sapiens]
Length = 244
Score = 518 bits (1334), Expect = e-147
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN 60
MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN
Sbjct: 1 MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN 60
Query: 61 PTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSP 120
PTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSP
Sbjct: 61 PTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSP 120
Query: 121 AEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPG 180
AEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPG
Sbjct: 121 AEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPG 180
Query: 181 GGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPEL 240
GGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPEL
Sbjct: 181 GGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPEL 240
Query: 241 RRED 244
RRED
Sbjct: 241 RRED 244
>gi|239752681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 286
Score = 498 bits (1281), Expect = e-141
Identities = 244/286 (85%), Positives = 244/286 (85%), Gaps = 42/286 (14%)
Query: 1 MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN 60
MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN
Sbjct: 1 MRGQVQKAHFQKSKPDRRLQLRIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQN 60
Query: 61 PTLSGNGALSPPRAISGSPQNPTLS----------------------------------- 85
PTLSGNGALSPPRAISGSPQNPTLS
Sbjct: 61 PTLSGNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQNPTLSGNGALSPPRAISGS 120
Query: 86 -------VCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLP 138
VCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLP
Sbjct: 121 PQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLP 180
Query: 139 RRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSP 198
RRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSP
Sbjct: 181 RRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSP 240
Query: 199 AGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED 244
AGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED
Sbjct: 241 AGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSPELRRED 286
>gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo
sapiens]
Length = 455
Score = 394 bits (1012), Expect = e-110
Identities = 184/193 (95%), Positives = 186/193 (96%)
Query: 52 RAISGSPQNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGC 111
+ +S NPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDT FMTGC
Sbjct: 263 KGLSAGLSNPTLSGNGALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTRFMTGC 322
Query: 112 AEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 171
AEAVTVPSPAEDSAVTGCAGAVTRCLPR RTVRGPACGDRLCGSCDGAFPGGGQCGDRLC
Sbjct: 323 AEAVTVPSPAEDSAVTGCAGAVTRCLPRWRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC 382
Query: 172 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 231
RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ
Sbjct: 383 RSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 442
Query: 232 KHSQMSPELRRED 244
KHSQMSPELRRED
Sbjct: 443 KHSQMSPELRRED 455
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 42.4 bits (98), Expect = 4e-04
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 127 TGCAGAVTRCLP---RRRTVRGPACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGG 181
+ C V C P R T +CG CGS G+ G G CG C SC G
Sbjct: 40 SSCCVPVCCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGC 99
Query: 182 GWCGDRL--CGSCDTVPSPAGDGAVTGCAGAVTVP 214
G CG CGSC G G GC + VP
Sbjct: 100 GSCGGSKGGCGSCGGSKGGCGSGC-GGCGSSCCVP 133
Score = 37.0 bits (84), Expect = 0.016
Identities = 30/90 (33%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 127 TGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGD 186
+ C V C P V PAC C SC G C C SC G G CG
Sbjct: 128 SSCCVPVCCCKPMCCCV--PACS---CSSCGKGGCGSCGCSKGACGSCGGSKGGCGSCGG 182
Query: 187 RL--CGSCDTVPSPAGDGAVTGCAGAVTVP 214
CGSC G G GC VP
Sbjct: 183 CKGGCGSCGGSKGGCGSGC-GGCGSGCGVP 211
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 42.4 bits (98), Expect = 4e-04
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRL--CGSCDTVPSPAGD 201
PAC CGSC G+ G G CG C SC G G CG CGSC S G
Sbjct: 64 PACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCG--GSKGGC 121
Query: 202 GAVTGCAG 209
G+ G G
Sbjct: 122 GSCGGSKG 129
Score = 38.1 bits (87), Expect = 0.007
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 93 GAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRL 152
G V G G+ C G ++ V C G+ C +CG
Sbjct: 129 GGCVSCG-GSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGC---------GSCGGSK 178
Query: 153 --CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVTGC 207
CGSC G+ G G CG C SC P CG C S P + G + C
Sbjct: 179 GGCGSCGGSKGGCGSCGCSQC-SCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSC 234
Score = 35.8 bits (81), Expect = 0.035
Identities = 37/133 (27%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 93 GAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTG-----------CAGAVTRCLPRRR 141
G G G C C + V PA + G C G+ C+
Sbjct: 37 GCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGG 96
Query: 142 TVRG-PACGDRL--CGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTVP 196
+ G +CG CGSC G+ G G CG C SC G G CG G
Sbjct: 97 SKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCVSCGG 156
Query: 197 SPAGDGAVTGCAG 209
S G G+ G G
Sbjct: 157 SKGGCGSCGGSKG 169
Score = 33.5 bits (75), Expect = 0.17
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 153 CGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRL--CGSCDTVPSPAGDGAVTGCA 208
C SC G+ G G CG C SC G G CG CGSC S G G+ G
Sbjct: 131 CVSCGGSKGGCGSCGGSKGGCVSCGGSKGGCGSCGGSKGGCGSCG--GSKGGCGSCGGSK 188
Query: 209 G 209
G
Sbjct: 189 G 189
Score = 31.6 bits (70), Expect = 0.66
Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 128 GCAGAVTRCLPRRRTVRGPACGDRLCGS-CDGAFPGGGQCGDRLCRSCDSPFPGGGWCGD 186
GC G C G CG CGS C G G G CG C C S G G CG
Sbjct: 2 GCCGCSGGC--------GSGCGG--CGSGCGGCGSGCGGCGSG-CGGCGS---GCGGCGS 47
Query: 187 RLC 189
C
Sbjct: 48 SCC 50
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 41.6 bits (96), Expect = 6e-04
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 110 GCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRL--CGSCDGAFPGGGQCG 167
GC + VP C V C+P +CG CGSC G+ G G CG
Sbjct: 37 GCGSSCCVP--------VCCCKPVCCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCG 88
Query: 168 DRL--CRSCDSPFPGGGWCGDRL--CGSCDTVPSPAGDGAVTGCAG 209
C SC G G CG CGSC S G G+ G G
Sbjct: 89 GSKGGCGSCGGSKGGCGSCGGSKGGCGSCG--GSKGGCGSCGGSKG 132
Score = 32.3 bits (72), Expect = 0.39
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 153 CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSC 192
CGSC G+ G G CG C C C CGSC
Sbjct: 124 CGSCGGSKGGCGSCGCSQCNCCKP------CCCSSGCGSC 157
Score = 29.3 bits (64), Expect = 3.3
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 153 CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 203
CGSC G+ G C SC G G CG C C +G G+
Sbjct: 114 CGSCGGSKGG--------CGSCGGSKGGCGSCGCSQCNCCKPCCCSSGCGS 156
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/114 (30%), Positives = 38/114 (33%), Gaps = 10/114 (8%)
Query: 97 GAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSC 156
G EG C GC + C V C P V PAC CGSC
Sbjct: 5 GCSEGCGSGC--GGCGSGCGGCGSGCGGCGSSCCVPVCCCKPVCCCV--PACSCSSCGSC 60
Query: 157 DGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTV-PSPAGDGAVTGC 207
G+ G G CG C SC G G CG C C P G + C
Sbjct: 61 GGSKGGCGSCGGSKGGCGSCGGSKGGCGSCG---CSQCSCYKPCCCSSGCGSSC 111
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 40.0 bits (92), Expect = 0.002
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 129 CAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRL 188
C V C+P +CG R CGSC G+ G G CG C SC P CG
Sbjct: 41 CCKPVCCCVP---ACSCSSCGKRGCGSCGGSKGGCGSCGCSQC-SCCKPCCCSSGCGSSC 96
Query: 189 C 189
C
Sbjct: 97 C 97
Score = 34.3 bits (77), Expect = 0.10
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 21/91 (23%)
Query: 128 GCAGAVTRCLPRRRTVRGPACG--DRLCGSCDGAFPGGGQCGDRLCRS--------CDSP 177
GC G C G +CG D CGSC G CG C C P
Sbjct: 2 GCCGCSGGC--------GSSCGGCDSSCGSCGSGCRG---CGPSCCAPVYCCKPVCCCVP 50
Query: 178 FPGGGWCGDRLCGSCDTVPSPAGDGAVTGCA 208
CG R CGSC G + C+
Sbjct: 51 ACSCSSCGKRGCGSCGGSKGGCGSCGCSQCS 81
>gi|13994372 keratin associated protein 17-1 [Homo sapiens]
Length = 105
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 145 GPACGDRLCGS--CDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDG 202
G CG CG C G+ GG CG C S G G CG CGS S G
Sbjct: 33 GSCCG---CGGSGCGGSGCGGSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCCGSSCCG-- 87
Query: 203 AVTGCAGAVTV-PSPVGDS 220
+GC G V P+P+ D+
Sbjct: 88 --SGCCGPVCCQPTPICDT 104
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTV-PSPAGDG 202
PAC CGSC G+ G G CG C SC G G CG C C P G
Sbjct: 43 PACSCSSCGSCGGSKGGRGSCGGSKGDCGSCGGSKGGCGSCG---CSQCSCYKPCCCSSG 99
Query: 203 AVTGC 207
+ C
Sbjct: 100 CGSSC 104
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 127 TGCAGAVTRCLPRRRTVRG---PACGDRLCGSCDGAFPGGGQCG--DRLCRSCDSPFPGG 181
+GC V C P V +CG CGSC G+ G CG C SC G
Sbjct: 60 SGCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGC 119
Query: 182 GWCGDRL--CGSCDTVPSPAGDGAVTGCAG 209
G CG CGSC S G G+ G G
Sbjct: 120 GSCGGSKGGCGSCG--GSKGGCGSCGGSKG 147
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/97 (28%), Positives = 31/97 (31%), Gaps = 20/97 (20%)
Query: 127 TGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLC--------RSCDSPF 178
+GC G + C G CG CG C G G CG C C P
Sbjct: 26 SGCGGCGSGC-----GGCGSGCGG--CGGCGSGCAGCGGCGSGCCVPVCCCKPMCCCVPA 78
Query: 179 PGGGWCGDRLCGSC-----DTVPSPAGDGAVTGCAGA 210
CG CGSC V GA C G+
Sbjct: 79 CSCSSCGKGGCGSCGGSKRGCVSCGVSKGACGSCGGS 115
>gi|60099478 keratin associated protein 5-6 [Homo sapiens]
Length = 129
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 203
PAC CGSC G+ G CG C SC G G CG C C +G G+
Sbjct: 43 PACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSCCKPCYCSSGCGS 102
Score = 37.0 bits (84), Expect = 0.016
Identities = 29/101 (28%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 93 GAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRL 152
G G G C C + V PA G G C +CG
Sbjct: 16 GCGSGCGGCGSSCCVPICCCKPVCCCVPACSCTSCGSCGGSKGCCG--------SCGGSK 67
Query: 153 --CGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGS 191
CGSC G+ G G CG C C + G CG C S
Sbjct: 68 GGCGSCGGSKGGCGSCGCSQCSCCKPCYCSSG-CGSSCCQS 107
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 38.5 bits (88), Expect = 0.005
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRL--CRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 203
PAC CGSC G+ G G CG C SC G G CG C +G G+
Sbjct: 71 PACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQSSCCKPCCCSSGCGS 130
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.020
Identities = 60/242 (24%), Positives = 79/242 (32%), Gaps = 19/242 (7%)
Query: 8 AHFQKSKPDRRLQLRIGIPGSLDG--VSDHPGGAPALSDNGALSPPRAISGSPQNPTLSG 65
AH P R ++R G+L VS P GA G +P G+ P +G
Sbjct: 38 AHHHHLAP-RTPEVRAAAAGALGNHVVSGSPAGAAGA---GPAAPAEGAPGAAPEPPPAG 93
Query: 66 N---GALSPPRAISGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTV---PS 119
G P R SP+ P + + EG+ +C A AV P+
Sbjct: 94 RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPA 153
Query: 120 PAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQC---GDRLCRSCDS 176
PA + G A R P GP G G A PG Q L S +
Sbjct: 154 PAGPAKPAGPAALAARAGPGPGPGPGPGPGP---GPGKPAGPGAAQTLNGSAALLNSHHA 210
Query: 177 PFPGGGWCGDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQM 236
P + +P PA G V V +P +AP PAP +
Sbjct: 211 AAPAVSLVNNGPAALLP-LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 237 SP 238
P
Sbjct: 270 PP 271
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 36.6 bits (83), Expect = 0.020
Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 14/121 (11%)
Query: 97 GAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTVRGPACGDRLCGSC 156
G G +C GC + +GC V C P V PAC CGSC
Sbjct: 5 GCSGGCGSSC--GGCGSSCGGCGSGYGGCGSGCCVPVCCCKPVCCCV--PACSCSSCGSC 60
Query: 157 DGAFPGGGQCGDRL--CRSCDSPFPGGG------WCGDRLCGSCDTVPSPAG--DGAVTG 206
G+ G CG C SC G G C CGSC G G+ G
Sbjct: 61 GGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGG 120
Query: 207 C 207
C
Sbjct: 121 C 121
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.2 bits (82), Expect = 0.027
Identities = 62/230 (26%), Positives = 75/230 (32%), Gaps = 41/230 (17%)
Query: 24 GIPGSLDGVSDHPGGAPAL-SDNGALSPPRAISGSPQN--PTLSGNGALSPPRAISGSPQ 80
G P + P G PA S GA +PP A SP+ T S GA PP A SP+
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPK 1114
Query: 81 NPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRR 140
G +GA T A T PSP A GA T
Sbjct: 1115 G-----------GLATPPHKGAPTT-------PAATPPSPKGGLATPPPKGAPTTPAATP 1156
Query: 141 RTVRG-----PACGDRLCGSCDGAFPGGGQC-----GDRLCRSCDSPFPGGGWCGDRLCG 190
+ +G P G + P GG G + P P GG G
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG 1216
Query: 191 S----CDTVPSPAGDGAVTGCAGAVTVPSPV------GDSAPRLRWQPAP 230
+ T PSP G A GA T P+ G + P + P P
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP 1266
Score = 35.8 bits (81), Expect = 0.035
Identities = 61/232 (26%), Positives = 75/232 (32%), Gaps = 24/232 (10%)
Query: 24 GIPGSLDGVSDHPGGAPAL-SDNGALSPPRAISGSPQNP---TLSGNGALSPPRAI---- 75
G P P G PA S GA +PP SP+ T GA +PP A
Sbjct: 984 GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSP 1043
Query: 76 SGSPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAE--AVTVPSPAEDSAVTGCAGA- 132
GSP L A + + +G T + G A T PSP A GA
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAP 1103
Query: 133 ----VTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQC-----GDRLCRSCDSPFPGGGW 183
T P+ P G + P GG G + P P GG
Sbjct: 1104 MPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGL 1163
Query: 184 CGDRLCGS----CDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQ 231
G+ T PSP G A GA T P+ S P+P+
Sbjct: 1164 ATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1215
Score = 32.7 bits (73), Expect = 0.30
Identities = 59/224 (26%), Positives = 74/224 (33%), Gaps = 42/224 (18%)
Query: 36 PGGAPAL-SDNGALSPPRAISGSPQN--PTLSGNGALSPPRAISGSPQN----------- 81
P G PA S GA +PP A SP+ T S GA +PP SP+
Sbjct: 973 PKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGA 1032
Query: 82 ---PTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLP 138
P + + + A +GA T A T+PSP A GA T P
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTT-------PAATLPSPKGGPATPSLKGAPT---P 1082
Query: 139 RRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGS----CDT 194
T P G P + P P GG G+ T
Sbjct: 1083 PAATPPSPKGGPATPSPKGAPMP----------PAATPPSPKGGLATPPHKGAPTTPAAT 1132
Query: 195 VPSPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSP 238
PSP G A GA T P+ S P+ P K + +P
Sbjct: 1133 PPSPKGGLATPPPKGAPTTPAATPPS-PKGGLATPPPKGAPTTP 1175
Score = 27.7 bits (60), Expect = 9.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 197 SPAGDGAVTGCAGAVTVPSPVGDSA-PRLRWQPAPQKHSQMSPE 239
SP+ GA T A T PSP G A P +W P P + SP+
Sbjct: 933 SPSPKGAPT--PPAATPPSPKGGPATPSPKWAPTPPAATPPSPK 974
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.8 bits (81), Expect = 0.035
Identities = 53/201 (26%), Positives = 69/201 (34%), Gaps = 24/201 (11%)
Query: 24 GIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQNPT 83
G PG+ DGV+ G A G P GSP G L + ++GSP +P
Sbjct: 494 GFPGA-DGVAGPKGPAGERGSPGPAGP----KGSPGEAGRPGEAGLPGAKGLTGSPGSPG 548
Query: 84 LSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLPRRRTV 143
T A G G A + P P + G AG R +P
Sbjct: 549 PDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG--ERGVPGPPGA 606
Query: 144 RGPACGDRLCGSCDGAFPGG--GQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGD 201
GPA D G+ P G G+ G++ P G+ G +P PAG
Sbjct: 607 VGPAGKDGEAGAQGPPGPAGPAGERGEQ------GPAGSPGFQG---------LPGPAGP 651
Query: 202 GAVTGCAGAVTVPSPVGDSAP 222
G G VP +G P
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGP 672
Score = 30.8 bits (68), Expect = 1.1
Identities = 56/222 (25%), Positives = 68/222 (30%), Gaps = 46/222 (20%)
Query: 24 GIPGS--LDGVSDHPGGAP---ALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGS 78
G+PG+ L G+ H G + A D G P G P +P +G PR + G
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGP----KGEPGSPGENGAPGQMGPRGLPGE 309
Query: 79 PQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAVTRCLP 138
P GA AG D G A P P + G GAV
Sbjct: 310 RGRP----------GAPGPAGARGND-----GATGAAGPPGPTGPAGPPGFPGAV----- 349
Query: 139 RRRTVRGPACGDRLCGSCDGAFPGG--GQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVP 196
G+ A P G G G + R P G G D P
Sbjct: 350 ---------------GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 197 SPAGDGAVTGCAGAVTVPSPVGDSAPRLRWQPAPQKHSQMSP 238
G G AGA P G S P+ P K + P
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Score = 28.9 bits (63), Expect = 4.3
Identities = 53/215 (24%), Positives = 68/215 (31%), Gaps = 37/215 (17%)
Query: 24 GIPGSLDGVSDHPG--GAPALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQN 81
G PG+ DG G GAP L G+ P G+ + P+ GSP
Sbjct: 701 GAPGN-DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGK 759
Query: 82 PTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVTGCAGAV-TRCLPRR 140
+ R +TG + G P +S +G AG R P
Sbjct: 760 DGV----RGLTGPIGPPGPAGA--------------PGDKGESGPSGPAGPTGARGAPGD 801
Query: 141 RTVRGPACGDRLCG--SCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSP 198
R GP G DG G+ GD + P G G G V +P
Sbjct: 802 RGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP--GPIGNVGAP 859
Query: 199 AGDGA-----------VTGCAGAVTVPSPVGDSAP 222
GA G AG V P P G++ P
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 34.7 bits (78), Expect = 0.078
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 110 GCAEAVTVPSPAEDSAVTGCAGA-----VTRCLPRRRTVRGPACGDRLCGSCDGAFPGGG 164
GC +GC G V C + PAC CGSC G+ G
Sbjct: 9 GCGSGCGGCGSGSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGG-- 66
Query: 165 QCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGA 203
C SC S G G CG C S +G G+
Sbjct: 67 ------CGSCGSSKGGCGSCGCSQSNCCKPCCSSSGCGS 99
>gi|193788697 hypothetical protein LOC140688 [Homo sapiens]
Length = 436
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 22 RIGIPGSLDGVSDHPGGAPALSDNGA--LSPPRAIS--GSPQNPTLSGNGALSPPRAISG 77
R+ P +L D + + S NG+ L+P + S G P P ++GNGA++P +
Sbjct: 24 RMRSPQNLHSQEDDDSSSESGSGNGSSTLNPSTSSSTQGDPAFPEMNGNGAVAPMDFTTA 83
Query: 78 SPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAV 115
+ P +++C + +G D C G V
Sbjct: 84 AEDQP-INLCDKLPPATALGTASYPSDGCGADGLRSRV 120
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 33.9 bits (76), Expect = 0.13
Identities = 41/140 (29%), Positives = 48/140 (34%), Gaps = 22/140 (15%)
Query: 31 GVSDHPGGAPALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQNPTLSVCTRY 90
GV HPGG LS SP A++ S L G +P R S + P
Sbjct: 518 GVRQHPGGIAGLSRERGHSPWAALTDSAAGAELPGLVPSAPRRPGSATAPRPL------- 570
Query: 91 ITGAVVGAGEGAVDTCFMTGCAEAVTVPSP--AEDSAVTGCAGAVTRCLPRRRTVRGPAC 148
V G G + AE T PSP AE G P R PA
Sbjct: 571 ---RVPGRGAQS---------AEPGTPPSPPGAEHGGGPGLILLRFPAAPPPRLQARPA- 617
Query: 149 GDRLCGSCDGAFPGGGQCGD 168
+ C C GA GG+ D
Sbjct: 618 APQTCAGCPGAHLEGGRLPD 637
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 32.7 bits (73), Expect = 0.30
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 15 PDRRLQLRIGIPGS--LDGVSDHP--GGAPALSDNGALSPPRAISGSPQNPTLSGNGALS 70
P RRL L PG G+S P GGAP S LS P P+ G S
Sbjct: 108 PGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSS 167
Query: 71 PPRAISGS------PQNPTLSVCTRYIT-GAVVGAGEGA 102
P +GS P P C T GA G G+GA
Sbjct: 168 SPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGA 206
>gi|13027594 zinc finger protein 747 [Homo sapiens]
Length = 191
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVT 205
P C C S A P G CG PG G G C +P + +
Sbjct: 80 PTCLPGPCASTGPAAPLGAACG--------VGGPGAGQAASSQRGVCVLLPQESEAASRR 131
Query: 206 GCAGAVTVPSPVGDSAPRLR-WQPAPQKHSQMSPELRR 242
G P+ G PR+R W+ QK +Q PE R+
Sbjct: 132 SSPGWRRRPN-CGIRLPRIRRWRSVRQKRTQQIPETRK 168
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 32.3 bits (72), Expect = 0.39
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 39/165 (23%)
Query: 65 GNGALSPPRAI------SGSPQNPTLSVCTRYITGAVVGAGEG-------AVDTCFMTGC 111
G+G PP + SP PT SVC + +GA + A +CF TG
Sbjct: 87 GSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGI 146
Query: 112 AE--AVTVPSPAEDSAVTGCA---GAVTRCLPRRRTV----RGPACGDRLCGSCDGAFPG 162
E +PA S C+ G P R + R G + G+C A G
Sbjct: 147 CEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSG 206
Query: 163 GGQCGDRLCRSCDSPFPGGGW---------CGDRLCGSCDTVPSP 198
+ GD P PG G+ CG G + P P
Sbjct: 207 DPRWGD--------PRPGEGFTARFLQPRGCGREFSGPFPSRPGP 243
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 32.3 bits (72), Expect = 0.39
Identities = 43/165 (26%), Positives = 57/165 (34%), Gaps = 39/165 (23%)
Query: 65 GNGALSPPRAI------SGSPQNPTLSVCTRYITGAVVGAGEG-------AVDTCFMTGC 111
G+G PP + SP PT SVC + +GA + A +CF TG
Sbjct: 87 GSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGAEMDRAPRSGRFLGCAGPSCFSTGI 146
Query: 112 AE--AVTVPSPAEDSAVTGCA---GAVTRCLPRRRTV----RGPACGDRLCGSCDGAFPG 162
E +PA S C+ G P R + R G + G+C A G
Sbjct: 147 CEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTHSRSGPTGSQTRGNCGAAGSG 206
Query: 163 GGQCGDRLCRSCDSPFPGGGW---------CGDRLCGSCDTVPSP 198
+ GD P PG G+ CG G + P P
Sbjct: 207 DPRWGD--------PRPGEGFTARFLQPRGCGREFSGPFPSRPGP 243
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.39
Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 146 PACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGSCDTVPSPAGDGAVT 205
P GDR G G PGGG G S PGGG G R D V A
Sbjct: 35 PGAGDRGGGGPGGGGPGGGSAGG------PSQPPGGGGPGIRKDAFADAVQRARQIAAKI 88
Query: 206 GCAGAVTVPSPVGD 219
G A TV + D
Sbjct: 89 GGDAATTVNNSTPD 102
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.3 bits (72), Expect = 0.39
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 22 RIGIPGSLDGVSDHPGGAPALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQN 81
R G+PG P G P L NG + + G P P L G P + G+P
Sbjct: 1262 RPGLPG--------PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR 1313
Query: 82 PTLS 85
P L+
Sbjct: 1314 PGLN 1317
Score = 30.8 bits (68), Expect = 1.1
Identities = 55/223 (24%), Positives = 65/223 (29%), Gaps = 52/223 (23%)
Query: 23 IGIPG--------SLDGVSDHPGGAPALSDNGALSPPRA--ISGSPQNPTLSGNGALSPP 72
IG+PG L G +PG ++ D G P G P P G P
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGP 1132
Query: 73 RAISGSPQNPTLSVCTRYITGAVVGAGE-GAVDTCFMTGCAEAVTVPSPAEDSAVTGCAG 131
+ ISG P NP L G V G G G G +P PA G G
Sbjct: 1133 KGISGPPGNPGLP----GEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPG 1188
Query: 132 AVTRCLPRRRTVRGPACGDRLCGSCDGAFPGGGQCGDRLCRSCDSPFPGGGWCGDRLCGS 191
P + G DG PG PG
Sbjct: 1189 FGNPGPPGLPGLSGQ--------KGDGGLPG---------------IPGN---------- 1215
Query: 192 CDTVPSPAGDGAVTGCAGAVTVPSPVGDSAPRL---RWQPAPQ 231
+P P G+ G G P P G P L + P PQ
Sbjct: 1216 -PGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQ 1257
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.3 bits (72), Expect = 0.39
Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 52/215 (24%)
Query: 22 RIGIPGS-----------LDGVSDHPG--GAPALSDNGALSPPRAISGSPQNPTLSGNGA 68
++G+PG LDG+ PG G P ALS + G P +P G+
Sbjct: 549 QVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 69 LSPPRAISG-SPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVT 127
+ P G PQ T+ + GA GE + + VP P
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGP----RGELSVSTPVPGPPGPPGPP 664
Query: 128 GCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGG-GQCGDRLCRSCDSP--FPGGGWC 184
G G +GP PG G+CGD D PG G+
Sbjct: 665 GHPGP-----------QGPP-----------GIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 185 GDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGD 219
G P P GD G G++ P +G+
Sbjct: 703 GP---------PGPKGDQGFPGTKGSLGCPGKMGE 728
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.3 bits (72), Expect = 0.39
Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 52/215 (24%)
Query: 22 RIGIPGS-----------LDGVSDHPG--GAPALSDNGALSPPRAISGSPQNPTLSGNGA 68
++G+PG LDG+ PG G P ALS + G P +P G+
Sbjct: 549 QVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 69 LSPPRAISG-SPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVT 127
+ P G PQ T+ + GA GE + + VP P
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGP----RGELSVSTPVPGPPGPPGPP 664
Query: 128 GCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGG-GQCGDRLCRSCDSP--FPGGGWC 184
G G +GP PG G+CGD D PG G+
Sbjct: 665 GHPGP-----------QGPP-----------GIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 185 GDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGD 219
G P P GD G G++ P +G+
Sbjct: 703 GP---------PGPKGDQGFPGTKGSLGCPGKMGE 728
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.3 bits (72), Expect = 0.39
Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 52/215 (24%)
Query: 22 RIGIPGS-----------LDGVSDHPG--GAPALSDNGALSPPRAISGSPQNPTLSGNGA 68
++G+PG LDG+ PG G P ALS + G P +P G+
Sbjct: 549 QVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 69 LSPPRAISG-SPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVT 127
+ P G PQ T+ + GA GE + + VP P
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGP----RGELSVSTPVPGPPGPPGPP 664
Query: 128 GCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGG-GQCGDRLCRSCDSP--FPGGGWC 184
G G +GP PG G+CGD D PG G+
Sbjct: 665 GHPGP-----------QGPP-----------GIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 185 GDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGD 219
G P P GD G G++ P +G+
Sbjct: 703 GP---------PGPKGDQGFPGTKGSLGCPGKMGE 728
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.3 bits (72), Expect = 0.39
Identities = 52/215 (24%), Positives = 71/215 (33%), Gaps = 52/215 (24%)
Query: 22 RIGIPGS-----------LDGVSDHPG--GAPALSDNGALSPPRAISGSPQNPTLSGNGA 68
++G+PG LDG+ PG G P ALS + G P +P G+
Sbjct: 549 QVGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPG 608
Query: 69 LSPPRAISG-SPQNPTLSVCTRYITGAVVGAGEGAVDTCFMTGCAEAVTVPSPAEDSAVT 127
+ P G PQ T+ + GA GE + + VP P
Sbjct: 609 PAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGP----RGELSVSTPVPGPPGPPGPP 664
Query: 128 GCAGAVTRCLPRRRTVRGPACGDRLCGSCDGAFPGG-GQCGDRLCRSCDSP--FPGGGWC 184
G G +GP PG G+CGD D PG G+
Sbjct: 665 GHPGP-----------QGPP-----------GIPGSLGKCGDPGLPGPDGEPGIPGIGFP 702
Query: 185 GDRLCGSCDTVPSPAGDGAVTGCAGAVTVPSPVGD 219
G P P GD G G++ P +G+
Sbjct: 703 GP---------PGPKGDQGFPGTKGSLGCPGKMGE 728
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,112,682
Number of Sequences: 37866
Number of extensions: 832533
Number of successful extensions: 4029
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 3463
Number of HSP's gapped (non-prelim): 664
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.