Search of human proteins with 239746936

Search of human proteins with 239746936

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752421 PREDICTED: hypothetical protein [Homo sapiens]           265   5e-72
gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]           265   5e-72
gi|239757909 PREDICTED: hypothetical protein [Homo sapiens]           263   4e-71
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    35   0.016
gi|22325364 ubiquitin associated protein 2 [Homo sapiens]              34   0.027
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            33   0.059
gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens]           33   0.059
gi|239753000 PREDICTED: hypothetical protein [Homo sapiens]            33   0.059
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]                33   0.077
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    32   0.13 
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    32   0.13 
gi|23510413 sorting nexin 26 [Homo sapiens]                            32   0.13 
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         32   0.13 
gi|31542255 hypothetical protein LOC140706 [Homo sapiens]              32   0.13 
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]       32   0.13 
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            31   0.22 
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            31   0.22 
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]            30   0.38 
gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo ...    30   0.38 
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]            30   0.38 
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]            30   0.38 
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    30   0.38 
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    30   0.38 
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    30   0.38 
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    30   0.38 
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    30   0.38 
gi|27262638 sperm associated antigen 1 [Homo sapiens]                  30   0.38 
gi|27262636 sperm associated antigen 1 [Homo sapiens]                  30   0.38 
gi|45387945 family with sequence similarity 62 (C2 domain contai...    30   0.50 
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    30   0.50 

>gi|239752421 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  265 bits (678), Expect = 5e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60
           MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG
Sbjct: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60

Query: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120
           GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG
Sbjct: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120

Query: 121 GDPGGGQ 127
           GDPGGGQ
Sbjct: 121 GDPGGGQ 127


>gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  265 bits (678), Expect = 5e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60
           MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG
Sbjct: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60

Query: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120
           GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG
Sbjct: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120

Query: 121 GDPGGGQ 127
           GDPGGGQ
Sbjct: 121 GDPGGGQ 127


>gi|239757909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score =  263 bits (671), Expect = 4e-71
 Identities = 125/127 (98%), Positives = 127/127 (100%)

Query: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60
           MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG
Sbjct: 1   MRWMAMAVAAQVCGQHDVVVWKSGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMG 60

Query: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120
           GAEL+REGGGSPLQSEAQGR+QEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG
Sbjct: 61  GAELSREGGGSPLQSEAQGRRQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAG 120

Query: 121 GDPGGGQ 127
           GDPGGGQ
Sbjct: 121 GDPGGGQ 127


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 63  ELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQER-------RGHRGGSRGREAR 115
           EL  +G   P + + + R +E       +R+  R R ++R       RG RG  RGR+  
Sbjct: 334 ELGPDGPDGP-EEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEA 392

Query: 116 REGAGGDPGG 125
           R G GG   G
Sbjct: 393 RGGGGGQDNG 402


>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
          Length = 1119

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 91  QRQALRGRGQERRGHRGGSRGREARREGAGGD 122
           ++++ RGRG   R  RGG+RGRE R E  G D
Sbjct: 125 EKESSRGRGNNNRKGRGGNRGREFRGEENGID 156


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 33.1 bits (74), Expect = 0.059
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 39  QCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQ--QEPGALFLEQRQALR 96
           QC   A     GA     +     ELA E     L + A G +           Q+ A  
Sbjct: 8   QCNQAAGRAGPGAPLGAALARTPVELAAESAAPALSAAAAGVKILGSGDKKLRRQKAAAG 67

Query: 97  GRGQERRGHRGGSRGREARRE-----GAGG--DPGGGQ 127
           G+    RG +G   G+EAR+      GAGG  + GGG+
Sbjct: 68  GKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGE 105



 Score = 27.3 bits (59), Expect = 3.2
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 61  GAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALR----------GRGQERRGHRGGSR 110
           G +  R G  S    + +GRQ+E  + F + R   R          G  + RRG  GG +
Sbjct: 187 GKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRG--GGKK 244

Query: 111 GREARREGAGGDPGG 125
            ++ RR G     GG
Sbjct: 245 PQKQRRRGQKAATGG 259



 Score = 25.8 bits (55), Expect = 9.4
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 26/121 (21%)

Query: 23  SGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQQ 82
           +G ++  W+ + S       G++    GAQ +       A +  +GG  P ++ A G + 
Sbjct: 133 TGSKKPRWRAQKSAAA----GSKNRGAGAQKAA----AAAGVKSQGGEKPQKAAAAGAKS 184

Query: 83  EPGALFLEQRQALRGRGQE-RRGH-----------RGGSRGREARREGAGGD----PGGG 126
             G     +R+  + RG E ++G            RGG R +  R + A G      GGG
Sbjct: 185 RSGKK--PRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGG 242

Query: 127 Q 127
           +
Sbjct: 243 K 243



 Score = 25.8 bits (55), Expect = 9.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 79  GRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPGG 125
           G QQ+   + ++ R+  R RG++ R  +  + G ++R    GGD  G
Sbjct: 345 GGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSR---GGGDKKG 388


>gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens]
          Length = 412

 Score = 33.1 bits (74), Expect = 0.059
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 43  GAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQQEPGALF---LEQRQALRGRG 99
           GAQ         V    GGA   R  G   L++E   +    GA     L++R + R  G
Sbjct: 110 GAQHLGGSGLGGVTRAEGGA---RRLGTGRLRAEKDAQVMNLGAFISGDLKERDSWRVEG 166

Query: 100 QERRGHRGGSRGREARREGAGGDPGGGQ 127
               G +G   G E R+EG G  PG G+
Sbjct: 167 CFGGGAQGLLTGLEGRQEGGGFGPGAGR 194


>gi|239753000 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score = 33.1 bits (74), Expect = 0.059
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)

Query: 96  RGRGQERRGHRGGSRGREARREGAG-GDPGGGQ 127
           R RG+ER GH   ++ R  RR+GAG G+ GGG+
Sbjct: 130 RARGKERAGH--SAQARALRRQGAGLGEGGGGE 160


>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
          Length = 462

 Score = 32.7 bits (73), Expect = 0.077
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 50  GAQDSVQMCMGGAELAREGGG-SPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGG 108
           GA  + +  +G A  A E G  +P  ++ +  +    A    +R ALR  G+ R G  GG
Sbjct: 255 GASPTTENGLGAAAGAGENGHCAPPPADVEPDESSAAAERRRRRGALRRGGRRRAGAEGG 314

Query: 109 SRGREARREGAGGDPGG 125
           + G + +  G G    G
Sbjct: 315 AGGADGQGAGPGAAESG 331


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 59  MGGAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALR-GRGQERRGHRGGSRGREARRE 117
           +GG  +  + G  P    A  R++ PGA    +    R GR + R G + GSRGR     
Sbjct: 407 LGGRGVCGKCGPGPWDDPA--RRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR-GWGP 463

Query: 118 GAGGDPGGGQ 127
           GAG  P GG+
Sbjct: 464 GAGRVPSGGR 473


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 59  MGGAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALR-GRGQERRGHRGGSRGREARRE 117
           +GG  +  + G  P    A  R++ PGA    +    R GR + R G + GSRGR     
Sbjct: 407 LGGRGVCGKCGPGPWDDPA--RRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR-GWGP 463

Query: 118 GAGGDPGGGQ 127
           GAG  P GG+
Sbjct: 464 GAGRVPSGGR 473


>gi|23510413 sorting nexin 26 [Homo sapiens]
          Length = 1126

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 54  SVQMCMGGAELAREGGGSPLQSEAQG------------RQQEPGALFLEQRQALRGRGQE 101
           S+ + +GG  L   G G P  S A              RQQ  G+L   QR      G  
Sbjct: 773 SLSLEVGGEPLGTSGSGPPPNSLAHPGAWVPGPPPYLPRQQSDGSLLRSQRPM----GTS 828

Query: 102 RRGHRGGSRGREARREGAGG 121
           RRG RG ++     R G GG
Sbjct: 829 RRGLRGPAQVSAQLRAGGGG 848


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 96  RGRGQERRGHRGGSRGREARREGAG---GDPGG 125
           RGRG   RG RGGSRGR   R   G   G  GG
Sbjct: 243 RGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGG 275


>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
          Length = 433

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 60  GGAELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGR------- 112
           GGA  AR GGG     E Q         + E+RQ   G  + R G  GG  G        
Sbjct: 209 GGAAEARAGGGGGGSLERQRAGARASGSW-ERRQTFSGSWERRHGGGGGGGGAGKPGGSW 267

Query: 113 EARREGAGG 121
           E R+ G+GG
Sbjct: 268 ERRQAGSGG 276


>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
          Length = 1222

 Score = 32.0 bits (71), Expect = 0.13
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 43  GAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQ--------------QEPGALF 88
           GA L  TG        + GAE+  +  G P +  A   +              Q P  L 
Sbjct: 14  GAPLVRTGLLLLSTWVLAGAEITWDATGGPGRPAAPASRPPALSPLSPRAVASQWPEELA 73

Query: 89  LEQRQALRGR--GQERRGHRGGSRGREARREGAGGDPGG 125
             +R A+ GR  G E    +GG RG E + E  G  P G
Sbjct: 74  SARRAAVLGRRAGPELLPQQGGGRGGEMQVEAGGTSPAG 112


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 11/49 (22%)

Query: 77  AQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPGG 125
           AQGR   PGA           +G     HR G+RGR +RR  A    GG
Sbjct: 918 AQGRAHRPGA-----------QGAPSHRHRPGARGRRSRRRAAVALAGG 955



 Score = 25.8 bits (55), Expect = 9.4
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 31  QRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGG--SPLQSEAQGRQQEPGALF 88
           QRR+    + V    + A G Q +     GG    R G G  + +   A  RQQ   A  
Sbjct: 849 QRRVRAGRRRVGARAVAAAGRQGAG--AGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPA 906

Query: 89  LEQRQALRGRGQERRGHRGGSRGREARREGAG 120
                A   R  + R HR G++G  + R   G
Sbjct: 907 AAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPG 938


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 11/49 (22%)

Query: 77  AQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPGG 125
           AQGR   PGA           +G     HR G+RGR +RR  A    GG
Sbjct: 918 AQGRAHRPGA-----------QGAPSHRHRPGARGRRSRRRAAVALAGG 955



 Score = 25.8 bits (55), Expect = 9.4
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 31  QRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGG--SPLQSEAQGRQQEPGALF 88
           QRR+    + V    + A G Q +     GG    R G G  + +   A  RQQ   A  
Sbjct: 849 QRRVRAGRRRVGARAVAAAGRQGAG--AGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPA 906

Query: 89  LEQRQALRGRGQERRGHRGGSRGREARREGAG 120
                A   R  + R HR G++G  + R   G
Sbjct: 907 AAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPG 938


>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 23  SGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQQ 82
           SG E  G +  LS V   + G      G     ++ +G A         PL SE  G ++
Sbjct: 153 SGAE--GKEVALSTVASLIRGT----VGCDSHAEVALGRASRIFGLEYFPLHSEKGGEKE 206

Query: 83  EPGALFLEQRQALRGRGQERRGHRGGSRGREARR----EGAGGDPGGGQ 127
           E               G   RG  GG  GRE RR    EG  G   GG+
Sbjct: 207 E---------------GIGERGREGGKEGREGRRKERKEGREGGREGGK 240


>gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo
           sapiens]
          Length = 194

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 19/100 (19%)

Query: 27  EGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCM--GGAELAREGGGSPLQSEAQGRQQEP 84
           E GW+ +  +V  C   A   A   +  V++C+  GG  + R G    +  +A+      
Sbjct: 10  ENGWETKHLMVILC---AHRAAGRTRQCVRLCLSAGGGRVGRAGRAWTVNPKARAAGLRS 66

Query: 85  GALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPG 124
           GA               RR  RG S G  AR    G  PG
Sbjct: 67  GA--------------PRRRRRGLSLGGGARGGACGAGPG 92


>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 23  SGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQQ 82
           SG E  G +  LS V   + G      G     ++ +G A         PL SE  G ++
Sbjct: 153 SGAE--GKEVALSTVASLIRGT----VGCDSHAEVALGRASRIFGLEYFPLHSEKGGEKE 206

Query: 83  EPGALFLEQRQALRGRGQERRGHRGGSRGREARR----EGAGGDPGGGQ 127
           E               G   RG  GG  GRE RR    EG  G   GG+
Sbjct: 207 E---------------GIGERGREGGKEGREGRRKERKEGREGGREGGK 240


>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 424

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 23  SGEEEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQGRQQ 82
           SG E  G +  LS V   + G      G     ++ +G A         PL SE  G ++
Sbjct: 153 SGAE--GKEVALSTVASLIRGT----VGCDSHAEVALGRASRIFGLEYFPLHSEKGGEKE 206

Query: 83  EPGALFLEQRQALRGRGQERRGHRGGSRGREARR----EGAGGDPGGGQ 127
           E               G   RG  GG  GRE RR    EG  G   GG+
Sbjct: 207 E---------------GIGERGREGGKEGREGRRKERKEGREGGREGGK 240


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 66  REGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGG------SRGREARREGA 119
           R G G+P     +G     G     QR A  G  +  RG RGG       RG    R   
Sbjct: 408 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR 467

Query: 120 GGDPGG 125
           GG+ GG
Sbjct: 468 GGNVGG 473


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 66  REGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGG------SRGREARREGA 119
           R G G+P     +G     G     QR A  G  +  RG RGG       RG    R   
Sbjct: 509 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR 568

Query: 120 GGDPGG 125
           GG+ GG
Sbjct: 569 GGNVGG 574


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 66  REGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGG------SRGREARREGA 119
           R G G+P     +G     G     QR A  G  +  RG RGG       RG    R   
Sbjct: 405 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR 464

Query: 120 GGDPGG 125
           GG+ GG
Sbjct: 465 GGNVGG 470


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 66  REGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGG------SRGREARREGA 119
           R G G+P     +G     G     QR A  G  +  RG RGG       RG    R   
Sbjct: 506 RGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR 565

Query: 120 GGDPGG 125
           GG+ GG
Sbjct: 566 GGNVGG 571


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 74  QSEAQGRQQEPGALFLEQRQALRG-RGQER-----RGHRGGSRGREARREGAGGDPGGGQ 127
           Q E +G ++  G  F  QR+  RG RGQ       RG R GSRG   +R G G      Q
Sbjct: 711 QPELEGPREGYGG-FRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQ 769


>gi|27262638 sperm associated antigen 1 [Homo sapiens]
          Length = 926

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 22/108 (20%)

Query: 22  KSGE--EEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQG 79
           KSG   E+GG  ++ +        AQ C  G   ++Q  + G     EGG  P +   Q 
Sbjct: 353 KSGRKHEDGGGDKKPAEPAGAARAAQPCVMG---NIQKKLTGKA---EGGKRPARGAPQ- 405

Query: 80  RQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPGGGQ 127
           R Q P A            G ++R  R  S    A   GA G PGGGQ
Sbjct: 406 RGQTPEA------------GADKRSPRRASAAAAAGG-GATGHPGGGQ 440


>gi|27262636 sperm associated antigen 1 [Homo sapiens]
          Length = 926

 Score = 30.4 bits (67), Expect = 0.38
 Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 22/108 (20%)

Query: 22  KSGE--EEGGWQRRLSVVCQCVTGAQLCATGAQDSVQMCMGGAELAREGGGSPLQSEAQG 79
           KSG   E+GG  ++ +        AQ C  G   ++Q  + G     EGG  P +   Q 
Sbjct: 353 KSGRKHEDGGGDKKPAEPAGAARAAQPCVMG---NIQKKLTGKA---EGGKRPARGAPQ- 405

Query: 80  RQQEPGALFLEQRQALRGRGQERRGHRGGSRGREARREGAGGDPGGGQ 127
           R Q P A            G ++R  R  S    A   GA G PGGGQ
Sbjct: 406 RGQTPEA------------GADKRSPRRASAAAAAGG-GATGHPGGGQ 440


>gi|45387945 family with sequence similarity 62 (C2 domain
           containing) member B [Homo sapiens]
          Length = 893

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 71  SPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHRGGSRGR--EARREGAGG-----DP 123
           S + SE + R  EP  +    + A  GR     G   G+RG   EA   GAGG     +P
Sbjct: 14  SRVPSEGRWRGAEPPGISASTQPASAGRAARHCGAMSGARGEGPEAGAGGAGGRAAPENP 73

Query: 124 GG 125
           GG
Sbjct: 74  GG 75


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 30.0 bits (66), Expect = 0.50
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 18/73 (24%)

Query: 61  GAELAREG-----GGSPLQSEAQ--GRQQEPGALFLEQRQALRGRGQERRGHRGGSRGRE 113
           GA  AREG     GG+P    A+  GR+Q+P        +A RG       H G + GR 
Sbjct: 408 GAGPAREGPAAWPGGAPTPPHARPTGRRQDPEP----GPRAPRGGPASSGWHAGSAAGR- 462

Query: 114 ARREGAGGDPGGG 126
                 G DPGGG
Sbjct: 463 ------GWDPGGG 469



 Score = 25.8 bits (55), Expect = 9.4
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 77  AQGRQQEPGALFLEQRQALRGRGQERRGHR-------GGSRGREARREGAGGDP 123
           A GR  +PG     +R+A RGRG  R           G SR     R  AG  P
Sbjct: 459 AAGRGWDPGGGSRARRRAARGRGCLRSARSSPHARPLGSSRSVRLLRSAAGRGP 512


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,092,419
Number of Sequences: 37866
Number of extensions: 302904
Number of successful extensions: 2335
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 610
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.