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Search of human proteins with 117190254
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform
b [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 576 e-165
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 576 e-165
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 567 e-162
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 567 e-162
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 523 e-149
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 511 e-145
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 510 e-145
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 510 e-145
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 510 e-145
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 268 3e-72
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 268 3e-72
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 268 3e-72
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 268 3e-72
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 222 3e-58
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 201 6e-52
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 57 3e-08
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 54 2e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 52 6e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 52 6e-07
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 51 1e-06
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 51 1e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 51 1e-06
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 51 1e-06
gi|4557509 cylicin 2 [Homo sapiens] 51 1e-06
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 51 1e-06
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 51 1e-06
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 50 2e-06
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 50 2e-06
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 50 2e-06
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 49 4e-06
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 576 bits (1485), Expect = e-165
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 576 bits (1485), Expect = e-165
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 567 bits (1461), Expect = e-162
Identities = 293/306 (95%), Positives = 293/306 (95%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS------------- 107
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 167
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 227
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 287
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGEDDS 293
NGEDDS
Sbjct: 301 NGEDDS 306
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 567 bits (1461), Expect = e-162
Identities = 293/306 (95%), Positives = 293/306 (95%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS------------- 107
RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 167
SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 227
GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 287
SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGEDDS 293
NGEDDS
Sbjct: 301 NGEDDS 306
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 523 bits (1348), Expect = e-149
Identities = 266/293 (90%), Positives = 278/293 (94%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGA+DSAEEGD LDDD NED+GDDQLELIKDDEKEAEEGEDDRDS NG+DDS
Sbjct: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 511 bits (1316), Expect = e-145
Identities = 259/293 (88%), Positives = 276/293 (94%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS NG+DDS
Sbjct: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 510 bits (1314), Expect = e-145
Identities = 259/293 (88%), Positives = 273/293 (93%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY+ QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SSS KKD+T+VKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD ANG+DDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 510 bits (1314), Expect = e-145
Identities = 259/293 (88%), Positives = 273/293 (93%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY+ QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SSS KKD+T+VKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD ANG+DDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 510 bits (1314), Expect = e-145
Identities = 259/293 (88%), Positives = 273/293 (93%)
Query: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
+NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY+ QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKE KQ VE+KN KSEEEQ+SSS KKD+T+VKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
EGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD ANG+DDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
Query: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
Query: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 243
Query: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 244 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 268 bits (686), Expect = 3e-72
Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)
Query: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 21 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
Query: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IAGQ LDIN+A EPK R K G KR + +Y G FD
Sbjct: 81 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
Query: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169
DY ++ D+Y+R++ Y RVPPPP RAV+P KR RV+ T+RRGK F+ K G R +
Sbjct: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
Query: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222
S KLK D+LQ IKKELTQIK K+DSLL LEKIEK+Q +A K E +
Sbjct: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 256
Query: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271
E+ S + T + +EGG D D E D +++D +ED G + IK
Sbjct: 257 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 222 bits (566), Expect = 3e-58
Identities = 125/213 (58%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
Query: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQR-DYY 120
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S + DYD+ R D+Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-SGYIFDYDYYRDDFY 124
Query: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKL 175
DR++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KL
Sbjct: 125 DRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
Query: 176 KGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
K +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 201 bits (511), Expect = 6e-52
Identities = 117/212 (55%), Positives = 144/212 (67%), Gaps = 24/212 (11%)
Query: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYD 121
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
Query: 122 RMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKLK 176
R++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KLK
Sbjct: 110 RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
Query: 177 GDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
+LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 56.6 bits (135), Expect = 3e-08
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 5 VTNKTDPRSMNS-RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNA 63
V + PR +N+ ++F+GN++ + ++ ++F + G+++ C V K +AFV E +A
Sbjct: 67 VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Query: 64 RAAVAGEDGRMIAGQVLDINLAAEPK-------VNRGKAGVKRSAAEMY---GSSFDLDY 113
+AA+A +G+ + G+ +++ L+ + + V G K A + F +
Sbjct: 126 KAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATF 185
Query: 114 DFQRDYYDRM--YSYPARVPPPPPIARAVVPSKR 145
D+Q+ + + + AR P PP R P +R
Sbjct: 186 DYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRR 219
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMI- 75
++F+GN++ ++ A+F+ YG ++ C+V K FAFV A A+ G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 76 AGQVLDINLAAEPKVNRGKAGVKRSAA 102
G+ L + ++ +N K V +A
Sbjct: 62 PGRALVVEMSRPRPLNTWKIFVGNVSA 88
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 53.9 bits (128), Expect = 2e-07
Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 29/258 (11%)
Query: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAFVQYVNERNA 63
R N+ +F+ N+ + D+ F +YG IV V +GFA+VQ+ + R+A
Sbjct: 6 RPPNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 64 RAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRM 123
A+ D + I G+ ++I A + + K +Y SS DYD R R
Sbjct: 65 EDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK-EGRNVYSSSRYDDYDRYRRSRSRS 123
Query: 124 Y----------SYPARVPPPPPIARAVVPSKRQRVSGNTSR---RGKSGFNSKSGQRGSS 170
Y Y R P +R +R R + R R +S SKS R S
Sbjct: 124 YERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRS 183
Query: 171 KSGKLKGDDLQAIKKELTQIK----QKVDSL--LENLEKIEKEQSKQAVEMKNDKSEEEQ 224
KS K ++ + + K K DS ++ + EKE K+ +S +
Sbjct: 184 KSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQS 243
Query: 225 SSSSVKKDETNVKMESEG 242
S S + + +S G
Sbjct: 244 RSRSKSRSRSWTSPKSSG 261
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 52.0 bits (123), Expect = 6e-07
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIV------GCSVHK--GFAFVQYVNERNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+IV C +K GFAF+ + +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 52.0 bits (123), Expect = 6e-07
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIV------GCSVHK--GFAFVQYVNERNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+IV C +K GFAF+ + +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 157 KSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK-IEKEQSKQAVEM 215
K GF Q+ S + ++G + + KKE + K D L K E + +K++ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 216 KNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 275
E E+ S + DE + +SE G++ EE L D D E + E + D E
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKEL 592
Query: 276 EAEEGEDDRDSANGEDD 292
E E+D +++ EDD
Sbjct: 593 E----ENDSENSEFEDD 605
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 143 SKRQRVSGNTSRRGKSGFNSKSGQRGSSKS--GKLKGDDLQAIKKELTQIKQKVDSLLEN 200
S++Q G+ ++G + GS K + +L+ E ++ + +
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED------DG 606
Query: 201 LEKI--EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESE-------GGADDSAEEG 251
EK+ E+ ++ E ++K EEE + V DE++ K + E AD AEEG
Sbjct: 607 SEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEG 666
Query: 252 D-----LLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
D + DD ED D E+ DEK E+ + + + E+DS
Sbjct: 667 DADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 167 RGSSKSGKLKGDDLQAIKKELTQ---IKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEE 223
RGS + K + +K + + K+ D L + E+ E +K++ E ++K +E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE-EVGPTKESEEDDSEKESDE 550
Query: 224 QSSSSVKKDETNVKMESEGGADDSAEEG-------DLLD------DDDNEDRGDDQLELI 270
S +D + + E G D EEG ++LD D +N + DD E +
Sbjct: 551 DCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKV 610
Query: 271 KDDEKEAEEGEDDRDSANGEDDS 293
D+E E ++D D E+D+
Sbjct: 611 LDEEGSEREFDEDSDEKEEEEDT 633
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 157 KSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK-IEKEQSKQAVEM 215
K GF Q+ S + ++G + + KKE + K D L K E + +K++ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 216 KNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 275
E E+ S + DE + +SE G++ EE L D D E + E + D E
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKEL 592
Query: 276 EAEEGEDDRDSANGEDD 292
E E+D +++ EDD
Sbjct: 593 E----ENDSENSEFEDD 605
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 143 SKRQRVSGNTSRRGKSGFNSKSGQRGSSKS--GKLKGDDLQAIKKELTQIKQKVDSLLEN 200
S++Q G+ ++G + GS K + +L+ E ++ + +
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFED------DG 606
Query: 201 LEKI--EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESE-------GGADDSAEEG 251
EK+ E+ ++ E ++K EEE + V DE++ K + E AD AEEG
Sbjct: 607 SEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEG 666
Query: 252 D-----LLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
D + DD ED D E+ DEK E+ + + + E+DS
Sbjct: 667 DADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 167 RGSSKSGKLKGDDLQAIKKELTQ---IKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEE 223
RGS + K + +K + + K+ D L + E+ E +K++ E ++K +E
Sbjct: 492 RGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEE-EVGPTKESEEDDSEKESDE 550
Query: 224 QSSSSVKKDETNVKMESEGGADDSAEEG-------DLLD------DDDNEDRGDDQLELI 270
S +D + + E G D EEG ++LD D +N + DD E +
Sbjct: 551 DCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKV 610
Query: 271 KDDEKEAEEGEDDRDSANGEDDS 293
D+E E ++D D E+D+
Sbjct: 611 LDEEGSEREFDEDSDEKEEEEDT 633
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +E +F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P RG+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +E +F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P RG+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 50.8 bits (120), Expect = 1e-06
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 25/179 (13%)
Query: 128 ARVPPPPPIARAVVPSKRQRVS--GNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKK 185
AR P P V SK + G K +S+S + K K KG D++ K+
Sbjct: 94 ARRQPLKPTRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSK-KGKDIEKGKE 152
Query: 186 ELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGAD 245
E K+D+ +K K+ K A + K+ +E E KKD K +S G D
Sbjct: 153 E------KLDA-----KKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKD 201
Query: 246 DSAE--------EGDLLDDDDNEDRGDD---QLELIKDDEKEAEEGEDDRDSANGEDDS 293
+ E E D + +G D +L+ +K DEK+ E+G+ D + + D+
Sbjct: 202 SATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDA 260
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 50.8 bits (120), Expect = 1e-06
Identities = 60/288 (20%), Positives = 114/288 (39%), Gaps = 52/288 (18%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIA 76
RV+IG L+ V++ D++ FS YG+++ + G+ FV++ + R+A AV +G+ +
Sbjct: 3 RVYIGRLS-YNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 77 GQVLDINLAAEPKVNR------------GKAGVKRSAAEMYGSSFDLDY----------- 113
G+ + + A P+ +R G + + S + YG +Y
Sbjct: 62 GERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRC 121
Query: 114 ------DFQRDYYDRMY--SYPARVPPPPPIARAVVPSKR--QRVSG------------- 150
DF R + Y ++ R R+ KR ++ G
Sbjct: 122 SWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIED 181
Query: 151 ---NTSRRGKSG--FNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIE 205
+ RR SG S+S +R S+S + ++I K ++ + + + K
Sbjct: 182 KPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGR 241
Query: 206 KEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDL 253
K +SK + K+D+ S S K + + S + +GD+
Sbjct: 242 KSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDI 289
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LNT +K+ +EA+F KYG+IV + K GFAFV + + +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAG 96
+G+ + G+ + + A +P G+ G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 26/235 (11%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIA 76
RV+IG L+ ++ DVE F YGKI+ + G+ FV++ + R+A AV +G+ +
Sbjct: 3 RVYIGRLS-YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61
Query: 77 GQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPI 136
G+ + + A P+ G G RS Y ++R D+ Y P R
Sbjct: 62 GERVIVEHARGPR-RDGSYGSGRSG-----------YGYRRSGRDK-YGPPTRTE----- 103
Query: 137 ARAVVPSKRQRVSGNTSR---RGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQK 193
R +V + R S + R +G G ++ +K+ L +K
Sbjct: 104 YRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRAL----EK 159
Query: 194 VDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSA 248
+D N KI + K + S S S + + K S G+ S+
Sbjct: 160 LDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSS 214
Score = 30.4 bits (67), Expect = 1.9
Identities = 48/251 (19%), Positives = 96/251 (38%), Gaps = 40/251 (15%)
Query: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGF---AFVQYVNERNARAAV 67
P R+ + NL++ D++ + G++ HKG +++V+ + + A+
Sbjct: 99 PTRTEYRLIVENLSSRC-SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRAL 157
Query: 68 AGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYP 127
DG + G+ I L + +R + RS + S R + R
Sbjct: 158 EKLDGTEVNGR--KIRLVEDKPGSRRRRSYSRSRSHSRSRS--------RSRHSR----- 202
Query: 128 ARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKEL 187
R R + S KS S+SG R SKS + + KKE
Sbjct: 203 ---------------KSRSRSGSSKSSHSKSRSRSRSGSRSRSKS-RSRSQSRSRSKKEK 246
Query: 188 TQ--IKQKVDSLLENLEKI---EKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEG 242
++ K+K S + K K+Q+++ ++ ++ + + S S K ++ + S+
Sbjct: 247 SRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQE 306
Query: 243 GADDSAEEGDL 253
+ + G +
Sbjct: 307 RRVEEEKRGSV 317
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 40/184 (21%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
++FIG LN +K+ +EA F KYG+IV + K GFAFV + + +A+AA
Sbjct: 9 KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 69 GEDGRMIAGQVLDINLAAEP---------------------KVNRGKAGVKRSAAEMYGS 107
+G+ + G+ + + A +P + RG G R + G
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127
Query: 108 SFDLDYDFQRDYYDRMYSYPARVPPPP----PIARAVVPSKRQRVSGNTSR------RGK 157
D Y D P + PPP P + PS R SG R RG+
Sbjct: 128 DDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGR 187
Query: 158 SGFN 161
G++
Sbjct: 188 DGYS 191
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 116 QRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKL 175
+ DY + + A++ P + +V K + + T K G++ + + ++
Sbjct: 73 EEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATE---------KGGEKKEAVAAEV 123
Query: 176 KGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETN 235
K ++ + E Q ++K ++ E+ ++ +E K+ DK+ E+ + +K++
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKE------DKNGNEKGEDAKEKEDGK 177
Query: 236 VKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGED 291
+ +G +D E+G+ D+ + EDR + D KE E+G++ D G+D
Sbjct: 178 KGEDGKGNGEDGKEKGE--DEKEEEDRKE------TGDGKENEDGKEKGDKKEGKD 225
Score = 42.0 bits (97), Expect = 6e-04
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 156 GKSGFNSKSGQRGSS-KSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVE 214
GK + K + G K+G KG+D K+K D K E K+ E
Sbjct: 145 GKEDKDEKGEEDGKEDKNGNEKGEDA----------KEKEDGKKGEDGKGNGEDGKEKGE 194
Query: 215 MKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDE 274
+ ++ + +++ + ++ K + + G D +E + +D ED G ++ E K+ E
Sbjct: 195 DEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKE 254
Query: 275 KEAEEGEDDRDSANGEDD 292
EE E + EDD
Sbjct: 255 DLKEEEEGKEEDEIKEDD 272
Score = 41.6 bits (96), Expect = 8e-04
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 144 KRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEK 203
K G ++ + G + G +G+ + GK KG+D +KE K+ D EN +
Sbjct: 161 KNGNEKGEDAKEKEDGKKGEDG-KGNGEDGKEKGED----EKEEEDRKETGDGK-ENEDG 214
Query: 204 IEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRG 263
EK K+ ++K + E+E+ E EGG ++ A G +D E+ G
Sbjct: 215 KEKGDKKEGKDVKVKEDEKEREDGK----------EDEGGNEEEA--GKEKEDLKEEEEG 262
Query: 264 DDQLELIKDDEKEAE 278
++ E+ +DD K+ E
Sbjct: 263 KEEDEIKEDDGKKEE 277
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 163 KSGQRGSSKSGKLKGD----DLQAIKKELTQIKQKV---DSLLENLEKIEKE------QS 209
K + SS+ K K D ++ + + + KQ+ + EN + E +
Sbjct: 35 KPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASE 94
Query: 210 KQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLEL 269
K+ VE+K + E+ KK+ ++++E +D E+ ++D NE++G+ E
Sbjct: 95 KEIVEVKEENIEDATEKGGEKKEAVAAEVKNE--EEDQKED----EEDQNEEKGEAGKE- 147
Query: 270 IKDDEKEAEEGEDDRD-SANGED 291
DEK E+G++D++ + GED
Sbjct: 148 -DKDEKGEEDGKEDKNGNEKGED 169
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 183 IKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKD---------- 232
++ E +++++ + ++ E L KE+ K+A E K ++ E E+ + KK
Sbjct: 462 VEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVK 521
Query: 233 ETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGED 291
E + E E G ++ EE + D E+ G ++ + +E E EEGE + + A GE+
Sbjct: 522 EEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAE-AEGEE 579
Score = 38.9 bits (89), Expect = 0.005
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 184 KKELTQIKQKVDSLLENLEKIEKEQSKQ-AVEMKNDKSEEEQSSSSVKKDETNVKMESEG 242
KKE + K++ E +K K A E+K ++ E+E+ +++E E EG
Sbjct: 488 KKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEE-----EDEG 542
Query: 243 GADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGE 281
D AEEG + +E +Q E + E E EE E
Sbjct: 543 AKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAE 581
Score = 31.2 bits (69), Expect = 1.1
Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 20/204 (9%)
Query: 88 PKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQR 147
P +GK+ V +S E G S + + P P++++ V K
Sbjct: 621 PVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEK--- 677
Query: 148 VSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKE 207
KS + SK+ KG+ + +KE+ + ++ EK+EK+
Sbjct: 678 --------AKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKE--------EKVEKK 721
Query: 208 QSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQL 267
+ K + K+E +V + T K ++ EEG L + +++ +
Sbjct: 722 EEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEG 781
Query: 268 ELIKDDEKEAEEGEDDRDSA-NGE 290
++ + +G D A NGE
Sbjct: 782 GSEEEGSDKGAKGSRKEDIAVNGE 805
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.127 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,016,959
Number of Sequences: 37866
Number of extensions: 527138
Number of successful extensions: 10375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 734
Number of HSP's that attempted gapping in prelim test: 4676
Number of HSP's gapped (non-prelim): 4026
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.