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Search of human proteins with 239746636
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746636 PREDICTED: hypothetical protein [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757622 PREDICTED: hypothetical protein [Homo sapiens] 255 5e-69
gi|239752128 PREDICTED: hypothetical protein [Homo sapiens] 255 5e-69
gi|239746636 PREDICTED: hypothetical protein [Homo sapiens] 255 5e-69
gi|169161476 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|50658075 phosphodiesterase 4D interacting protein isoform 3 [... 37 0.005
gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 35 0.015
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 34 0.025
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 34 0.033
gi|146134388 YLP motif containing 1 [Homo sapiens] 34 0.033
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 33 0.056
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 33 0.056
gi|22027648 lipin 1 [Homo sapiens] 33 0.056
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 33 0.073
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens] 33 0.073
gi|112421108 capicua homolog [Homo sapiens] 33 0.073
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 33 0.073
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.073
gi|241982802 HMG box domain containing 3 [Homo sapiens] 32 0.12
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 32 0.16
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens] 32 0.16
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 31 0.21
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 31 0.21
gi|21624641 calcium binding protein 4 [Homo sapiens] 31 0.21
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 31 0.21
gi|23510368 homeobox D11 [Homo sapiens] 31 0.28
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 31 0.28
gi|156416026 zinc finger protein 219 [Homo sapiens] 31 0.28
gi|156415998 zinc finger protein 219 [Homo sapiens] 31 0.28
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 0.28
>gi|239757622 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 255 bits (652), Expect = 5e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 60
MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ
Sbjct: 1 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 60
Query: 61 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 120
RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA
Sbjct: 61 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 120
Query: 121 GPRG 124
GPRG
Sbjct: 121 GPRG 124
>gi|239752128 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 255 bits (652), Expect = 5e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 60
MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ
Sbjct: 26 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 85
Query: 61 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 120
RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA
Sbjct: 86 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 145
Query: 121 GPRG 124
GPRG
Sbjct: 146 GPRG 149
>gi|239746636 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 255 bits (652), Expect = 5e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 60
MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ
Sbjct: 1 MWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQ 60
Query: 61 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 120
RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA
Sbjct: 61 RGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMA 120
Query: 121 GPRG 124
GPRG
Sbjct: 121 GPRG 124
>gi|169161476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 36.6 bits (83), Expect = 0.005
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 41 SDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP-SARAAPTSERKRGR 99
+D GS CRR+ G R S RA P +G A TP S R P+ ER+R
Sbjct: 4 TDSGSC---CRRRCDFGCCCRASR-----RAHYTPYRSGDATRTPQSPRQTPSRERRRPE 55
Query: 100 PHSLWATGTRSDSAALPA--WM 119
P WA + AA A WM
Sbjct: 56 PAGSWAAAAEEEEAAAAATPWM 77
>gi|50658075 phosphodiesterase 4D interacting protein isoform 3
[Homo sapiens]
Length = 310
Score = 36.6 bits (83), Expect = 0.005
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 41 SDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP-SARAAPTSERKRGR 99
+D GS CRR+ G R S RA P +G A TP S R P+ ER+R
Sbjct: 4 TDSGSC---CRRRCDFGCCCRASR-----RAHYTPYRSGDATRTPQSPRQTPSRERRRPE 55
Query: 100 PHSLWATGTRSDSAALPA--WM 119
P WA + AA A WM
Sbjct: 56 PAGSWAAAAEEEEAAAAATPWM 77
>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
Length = 380
Score = 35.0 bits (79), Expect = 0.015
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 62 GSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWM 119
GS S G AR G A P A P SE G P L ++SA LPAWM
Sbjct: 3 GSDVDSEGPARR-----GGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWM 55
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 34.3 bits (77), Expect = 0.025
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 65 PSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAA---------- 114
P S+G A APP T+ AL PS A T+ S A+G S SA
Sbjct: 397 PPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGPAPGFPF 456
Query: 115 LPAWMAGP 122
P WM P
Sbjct: 457 PPPWMGMP 464
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 33.9 bits (76), Expect = 0.033
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 31 ARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTT--GRALVTPSAR 88
AR +AA + + + R +R G + + S +G +RAP G A T +AR
Sbjct: 197 ARSARAATAARAAAAEREEAREERARGCSEASRTSSDSGPSRAPAARVVGGEAAATAAAR 256
Query: 89 AAPTSERKRGRPHSLWATGTRSDSAA 114
A P + G P + + SAA
Sbjct: 257 ARPRAPLAAGSPVPVRPQDAAARSAA 282
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 33.9 bits (76), Expect = 0.033
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 3 LGRRESRGCRQGRGLAMKPEDQGLVAVTAR------GLQAAQSISDEGSSQWRCRRQ-RQ 55
+GRRE + RG + D+GLV + GLQ +Q D G++ R R R+
Sbjct: 1062 MGRREDSREKMNRGEGSR--DRGLVRPGSSREKVPGGLQGSQ---DRGAAGSRERGPPRR 1116
Query: 56 PGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGR 99
GS++RG + R R PP+ G P R + ER GR
Sbjct: 1117 AGSQERGPLRRAGSRERIPPRRAGSRERGP-PRGPGSRERGLGR 1159
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 17 LAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQ 76
LA KP +V + A + + +W + ++P ++ + + RA++PP
Sbjct: 600 LATKPSASVTASVLEKTTTKAPGKMPKSTKKWVTKNAKRPTTQPPVMPTTKHSRAQSPPD 659
Query: 77 TTGR--ALVTPSARAAPTSERKR 97
T + A +T A PTSE R
Sbjct: 660 LTSQTTAALTTEASRRPTSEFTR 682
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 36 AAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSER 95
++ S S SS+ R R P R SS SS+GR+R ++ + + S+ ++ +S R
Sbjct: 1441 SSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSR 1500
Query: 96 KRGRPHS 102
R R S
Sbjct: 1501 SRSRSPS 1507
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 49 RCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRA----LVTPSARAAPTS 93
R R+QRQ +E+R P + P TG A LV P A A T+
Sbjct: 758 RRRQQRQAETEERSPQPPTGKWPSLPETPTGLADIPCLVIPPAPAKKTA 806
>gi|22027648 lipin 1 [Homo sapiens]
Length = 890
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 36 AAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSER 95
A I EG+S+ C+ +R RG PS+ + AP + TPS+ + R
Sbjct: 104 ATSPILSEGASRMECQLKRGSVDRMRGLDPSTPAQVIAPSE-------TPSSSSVVKKRR 156
Query: 96 KRGRPHSL 103
KR R L
Sbjct: 157 KRRRKSQL 164
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.7 bits (73), Expect = 0.073
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 17 LAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRG-------------- 62
L+ K D+G + R ++S S G S W QR GS QR
Sbjct: 278 LSPKHRDEGRKTGSQRS-SGSRSPSPSGGSGWGSP-QRNGGSGQRSGAHGGRPGSAHSPP 335
Query: 63 ---SSPSSNGR---ARAPPQTTGRALVTPSARAAPTSERKRGR 99
SSPS R A A P R +PS R+AP+S+ + GR
Sbjct: 336 DKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGR 378
Score = 32.3 bits (72), Expect = 0.096
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 44 GSSQWRCRRQRQPGSEQRGSSPSSNGRAR---APPQTTGRALVTPSARAAPTSERKRGRP 100
G+ + R RR+R+ S S+P GR R APP+ + R+L AR++ S RG P
Sbjct: 382 GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSL--SRARSSSDSGSGRGAP 439
Score = 31.2 bits (69), Expect = 0.21
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 5 RRESRGCRQGRGLAMKPEDQGLVAV-------TARGLQAAQSISDEGSSQWRCRRQRQPG 57
RR R R+ R A P +G ++R L A+S SD GS + +PG
Sbjct: 387 RRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPG 446
Query: 58 SEQRGSSPSSNGRARAP---PQTTGRALVTPSARAAP---TSERKRGRPHSLWATGTRSD 111
SE+ + R P P +T + R P +S R G PH + +RS
Sbjct: 447 SERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPG-PHPRSWSSSRSP 505
Query: 112 S 112
S
Sbjct: 506 S 506
>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
Length = 553
Score = 32.7 bits (73), Expect = 0.073
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 58 SEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPA 117
SE + G+ R ++ R +P RA S RKRGRP T +S+ +
Sbjct: 132 SEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRKRGRPPKDEKDLTIPESSTVKG 191
Query: 118 WMAGP 122
MAGP
Sbjct: 192 MMAGP 196
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 32.7 bits (73), Expect = 0.073
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 30 TARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARA 89
+A+G + S SS WR Q G E RG P+ A AP G + + S RA
Sbjct: 1258 SAKGPETMASKFPSSSSDWRVPGQ---GLENRGEPPTPPSPAPAPAVAPGGSSESSSGRA 1314
Query: 90 A-PTSERK 96
A T ERK
Sbjct: 1315 AGDTPERK 1322
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 32.7 bits (73), Expect = 0.073
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 52 RQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSL 103
++ PGS Q+GS SS G A A Q + P A +P+ PH+L
Sbjct: 593 KELSPGSAQKGSPGSSQGTACAGTQPGAQPGAQPGASPSPSQPPADQSPHTL 644
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.073
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 28 AVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQR---GSSPSSNGRARAPPQTTGRALVT 84
A RG +++ + G S+ R + R+ S QR SP GR+R+ PQ G +
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS-PQRPGWSRSR 546
Query: 85 PSARAAPTSERKRGRPHS 102
+ R + +RGR HS
Sbjct: 547 NTQRRGRSRSARRGRSHS 564
Score = 31.2 bits (69), Expect = 0.21
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 6 RESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSP 65
R++R R+ R + PE + R ++ S E + + R R+R+ S R +
Sbjct: 1699 RKARLSRRSRSASSSPETRS--RTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTT 1756
Query: 66 SSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTR 109
S GR+ +P + + S R + R+R R S +T R
Sbjct: 1757 SRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRR 1800
Score = 26.2 bits (56), Expect = 6.9
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 23 DQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAP-------- 74
DQ VA T G ++ S E + Q + S+ SSP S + R P
Sbjct: 1524 DQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESD---SSPDSKAKTRTPLRQRSRSG 1580
Query: 75 --PQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALP 116
P+ ++ ++P + +S + +P + + SDS+ P
Sbjct: 1581 SSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEP 1624
Score = 26.2 bits (56), Expect = 6.9
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 41 SDEGSSQWRCRRQRQPGSE--QRGS--SPSSNGRARAP---------PQTTGRALVTPSA 87
S EGSS + P S +RGS SP ++R P P+ T +A ++ +
Sbjct: 1648 SPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS 1707
Query: 88 RAAPTSERKRGR 99
R+A +S R R
Sbjct: 1708 RSASSSPETRSR 1719
Score = 26.2 bits (56), Expect = 6.9
Identities = 20/79 (25%), Positives = 27/79 (34%)
Query: 22 EDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRA 81
+ L A+ + + S S SS S GSS S + + P Q
Sbjct: 2517 QPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVAL 2576
Query: 82 LVTPSARAAPTSERKRGRP 100
PS AP + GRP
Sbjct: 2577 KRVPSPTPAPKEAVREGRP 2595
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 44 GSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERK---RGRP 100
GSS ++ + P R S ++R PP+ + + P + + T R+ P
Sbjct: 781 GSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSP 840
Query: 101 HSLWATGT 108
H +GT
Sbjct: 841 HPKVKSGT 848
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 22 EDQGLVAVTARGL---QAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTT 78
+ G+++V A G+ + + G+ Q QP E+R SS SS+ + + ++
Sbjct: 2489 DHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSS 2548
Query: 79 GRALVTPSARAAPTSE 94
+ + S ++ SE
Sbjct: 2549 SSSSSSSSGSSSSDSE 2564
>gi|241982802 HMG box domain containing 3 [Homo sapiens]
Length = 1292
Score = 32.0 bits (71), Expect = 0.12
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 66 SSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGTRSDSAALPAWMAGPRG 124
S++ AP + TG L+TP +RA R RG+P L A R A LPA + RG
Sbjct: 474 STSSPLPAPKKPTGVDLLTPGSRAPELKGRARGKPSLLAA--ARPMRAILPAPVNVGRG 530
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 31.6 bits (70), Expect = 0.16
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 44 GSSQWRCRRQRQPGSEQR-----------GSSPSSNGRARAPPQT--TGRALVTPSARAA 90
GS + R RR + S R G GR RAP + GR T + RAA
Sbjct: 61 GSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAA 120
Query: 91 PTSERKRGRPHSLWATGTRSDSAALP 116
P + R P A G+ + ALP
Sbjct: 121 PAARGSRPGPAGTMAAGSITTLPALP 146
>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
Length = 951
Score = 31.6 bits (70), Expect = 0.16
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 18 AMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQT 77
A KP Q LV V ++ A DEG + +++ S + + +APP
Sbjct: 417 ATKPTQQSLVGVLETAMKLANQ--DEGPED-----EEDEVPKKQNSPVAPTAQPKAPPSR 469
Query: 78 TGRALVTPSARAAPTSERKRGRPHSLWATGTRSD--SAALPA 117
T ++ P+A+A P + R + + G + AAL A
Sbjct: 470 TPQSGSAPTAKAPPKATSTRAQQQLAFLEGRKKQLLQAALRA 511
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 31.2 bits (69), Expect = 0.21
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 27/135 (20%)
Query: 10 GCRQGRGLAMKPEDQGL-------VAVTARGLQAAQSISDEGSS-------------QWR 49
G R+G G + + QG A A Q AQ +E ++ + R
Sbjct: 48 GQRRGSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREEEAAAAPVPTSSGHRTEKRKR 107
Query: 50 CRRQRQPGS---EQRGS--SPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLW 104
+ Q QP ++RGS SPS++ + + A P++R T +RKR +P
Sbjct: 108 LQLQCQPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEKRKRQQPQRRP 167
Query: 105 A--TGTRSDSAALPA 117
A TG R S + P+
Sbjct: 168 AGGTGQRRGSGSSPS 182
Score = 31.2 bits (69), Expect = 0.21
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 4 GRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQP--GSEQR 61
G R S Q R + E T+RG + + + R + QR+P G+ QR
Sbjct: 123 GSRSSPSADQQRAQDREEEAAAAPVPTSRGHRTEK--------RKRQQPQRRPAGGTGQR 174
Query: 62 ---GSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWA--TGTRSDSAALP 116
GSSPS++ + + A P++R T +RK +P A TG R S + P
Sbjct: 175 RGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSP 234
Query: 117 A 117
+
Sbjct: 235 S 235
Score = 28.1 bits (61), Expect = 1.8
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 5 RRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQP------GS 58
RR + G Q RG P A AA + R+ +QP G+
Sbjct: 165 RRPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGT 224
Query: 59 EQRG---SSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGT 108
QR SSPS++ + + A P++R T +RK +P A GT
Sbjct: 225 GQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGT 277
Score = 28.1 bits (61), Expect = 1.8
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 10 GCRQGRGLAMKPEDQGLV--AVTARGLQAAQSISDEGSSQWRCRRQRQP--GSEQR---G 62
G R+G G + + QG A A S + R + Q QP G+ QR G
Sbjct: 278 GQRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSG 337
Query: 63 SSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGT--RSDSAALPA 117
S S+N + + A P++ T +RK +P A GT R S + P+
Sbjct: 338 CSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTGQRRGSGSSPS 394
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 31.2 bits (69), Expect = 0.21
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 10 GCRQGRGLAMKPEDQGLV----------AVTARGLQAAQSISDEGSSQWRCRRQRQPGSE 59
G R+G G + + QG A T+RG + +++ Q RR +
Sbjct: 119 GQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHR-----TEKRKPQQPQRRPAAGTGQ 173
Query: 60 QRGS--SPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSLWATGT 108
+RGS SPS++ + + A P++R T +RKR +P A GT
Sbjct: 174 RRGSRSSPSADQQGAQDREEEAAAAPVPTSRGHRTEKRKRQQPQCRPAAGT 224
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 31.2 bits (69), Expect = 0.21
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 7 ESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRR--QRQPGSEQRGSS 64
++RG +QG LA+ + VT + ++ + S + R R +++ GS +
Sbjct: 5 QARG-QQGPNLAIGRQKPPAGVVTPKSDAEEPPLTRKRSKKERGLRGSRKRTGSSGEQTG 63
Query: 65 PSSNGRARAPPQTTGRALVTPSARAAPTSERK--RGRPHSLWATGTRS 110
P + G + PP T P A P S R+ R RP SL R+
Sbjct: 64 PEAPGSSNNPPSTGEGPAGAPPASPGPASSRQSHRHRPDSLHDAAQRT 111
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 31.2 bits (69), Expect = 0.21
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 22 EDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQR------GSSPSSNGRARAPP 75
E A A AAQ + Q + ++Q+Q +Q+ GSS + A +
Sbjct: 87 EAAAAAAAAAAAAAAAQQQQQQQQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVLAAPSGL 146
Query: 76 QTTGRALVTPSARAAPTSERKRGR---PHSLWATGTRSDSAALPAWMAGPRG 124
+ G + +A AA + +R R P + G+ S +A LP + GP G
Sbjct: 147 ERYGLSAAAAAAAAAAAAVEQRSRFEYPPPPVSLGSSSHTARLPNGLGGPNG 198
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 0.28
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 56 PGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHS 102
PGSE +G++ S G PP G S+ AP RK+ P++
Sbjct: 230 PGSEPKGAAEGSGGDGEGPPGEAGAE--KSSSAVAPQRSRKKRCPYT 274
>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 30.8 bits (68), Expect = 0.28
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 3 LGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQ-PGSEQR 61
+ + S+G R+ + P V L+ ++ ++G WRCR Q GS+
Sbjct: 414 INKDASKGGREEKAPGRLPGCHSPHPVPVELLRLQEAHREQGPQGWRCRSQEAFVGSDTG 473
Query: 62 GSSPSSNGRARAPPQT---TGRALVTPSARAAP 91
+SP++ AR PQ R + +P R P
Sbjct: 474 PNSPATVPGARRSPQILLWAPRHVSSPPPRVQP 506
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 30.8 bits (68), Expect = 0.28
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 3 LGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQ-PGSEQR 61
+ + S+G R+ + P V L+ ++ ++G WRCR Q GS+
Sbjct: 414 INKDASKGGREEKAPGRLPGCHSPHPVPVELLRLQEAHREQGPQGWRCRSQEAFVGSDTG 473
Query: 62 GSSPSSNGRARAPPQT---TGRALVTPSARAAP 91
+SP++ AR PQ R + +P R P
Sbjct: 474 PNSPATVPGARRSPQILLWAPRHVSSPPPRVQP 506
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 0.28
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 56 PGSEQRGSSPSSNGRARAPPQTTGRALVT---PSARAAPTSERKRGRPHSLWATGTRSDS 112
P QRGS+P S + P T + PS+ A P S RK P G ++
Sbjct: 565 PPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEA 624
Query: 113 AALP-AWMAGPRG 124
L + AGP G
Sbjct: 625 EPLDLSLRAGPGG 637
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.8 bits (68), Expect = 0.28
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 56 PGSEQRGSSPSSNGRARAPPQTTGRALVT---PSARAAPTSERKRGRPHSLWATGTRSDS 112
P QRGS+P S + P T + PS+ A P S RK P G ++
Sbjct: 565 PPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEA 624
Query: 113 AALP-AWMAGPRG 124
L + AGP G
Sbjct: 625 EPLDLSLRAGPGG 637
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.8 bits (68), Expect = 0.28
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 51 RRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTP---SARAAPTSE--RKRGRP 100
RR+R S SS SS+ R+R+PP+ + +P + R +P++ R+R RP
Sbjct: 347 RRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRP 401
Score = 28.5 bits (62), Expect = 1.4
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 21 PEDQGLVAVTARGLQAAQSISDEGSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGR 80
P Q VT R + S +GSS R R+ + + SPS RA PQT+
Sbjct: 640 PPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA---PQTSSS 696
Query: 81 ALVTPSARAAPTSERKRGRP 100
P R A +S ++R P
Sbjct: 697 P--PPVRRGASSSPQRRQSP 714
Score = 27.3 bits (59), Expect = 3.1
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 41 SDEGSSQWRCRRQRQPGSEQRGSSPSSNG----RARAPPQTTGRALVTPSARAAPTSERK 96
+D + + RRQ Q S GSS SS R+ GR +R+A S RK
Sbjct: 476 ADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRK 535
Query: 97 RGRPHSLWATGTRSDS 112
R + S RS S
Sbjct: 536 RQKETSPRGRRRRSPS 551
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.126 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,790,431
Number of Sequences: 37866
Number of extensions: 277913
Number of successful extensions: 1781
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 383
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.