Guide to the Human Genome
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Name: LOC100289305 Sequence: fasta or formatted (265aa) NCBI GI: 239746589
Description:

PREDICTED: hypothetical protein XP_002343791

Not currently referenced in the text

Other entries for this name:
alt mRNA {265aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         32           2
 C cysteine            3.4          9           1
 D aspartate           2.3          6           2
 E glutamate           5.7         15           2
 F phenylalanine       4.5         12           1
 G glycine             7.2         19           2
 H histidine           3.8         10           1
 I isoleucine          1.5          4           1
 K lysine              2.3          6           1
 L leucine            12.5         33           3
 M methionine          0.8          2           1
 N asparagine          2.3          6           1
 P proline             8.3         22           2
 Q glutamine           4.9         13           2
 R arginine            7.5         20           2
 S serine             10.9         29           2
 T threonine           3.0          8           3
 V valine              5.3         14           1
 W tryptophan          1.1          3           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343791 
LOC100289305          1.000   PREDICTED: hypothetical protein 
LOC100291740          0.996   PREDICTED: similar to Putative uncharacterized C21o...
LOC100293794          0.021   PREDICTED: hypothetical protein 
LOC100287762          0.016   PREDICTED: hypothetical protein XP_002342380 
SNAI1                 0.016   snail 1 homolog 
NFATC2                0.014   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.014   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.014   nuclear factor of activated T-cells, cytoplasmic, c...
MDC1                  0.014   mediator of DNA-damage checkpoint 1 
PPP1R9B               0.012   protein phosphatase 1, regulatory subunit 9B 
SLC16A10              0.012   solute carrier family 16, member 10 
SRCAP                 0.010   Snf2-related CBP activator protein 
LOC100128100          0.010   PREDICTED: hypothetical protein 
LOC100290023          0.010   PREDICTED: hypothetical protein XP_002348147 
LOC100128100          0.010   PREDICTED: hypothetical protein 
LOC100288382          0.008   PREDICTED: hypothetical protein XP_002342213 
VWA3B                 0.008   von Willebrand factor A domain containing 3B 
DNAJC5G               0.008   DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [H...
ZNF469                0.008   zinc finger protein 469 
BAP1                  0.008   BRCA1 associated protein-1 
POU6F2                0.008   POU domain, class 6, transcription factor 2 
ZNF362                0.008   zinc finger protein 362 
TNS1                  0.006   tensin 
ZNF133                0.006   zinc finger protein 133 
ZNF133                0.006   zinc finger protein 133 
TMC6                  0.006   transmembrane channel-like 6 
TMC6                  0.006   transmembrane channel-like 6 
BCL9L                 0.006   B-cell CLL/lymphoma 9-like 
C1orf104              0.006   hypothetical protein LOC284618 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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