Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo
sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo ... 624 e-179
gi|239756699 PREDICTED: hypothetical protein [Homo sapiens] 508 e-144
gi|122937271 WAS protein homolog associated with actin, golgi me... 36 0.048
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 36 0.048
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 36 0.048
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 35 0.081
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 35 0.081
gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor... 35 0.11
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 34 0.14
gi|160707881 formin 2 [Homo sapiens] 34 0.14
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 34 0.14
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 34 0.18
gi|55956910 meningioma 1 [Homo sapiens] 34 0.18
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 34 0.18
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 34 0.18
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 34 0.18
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 34 0.18
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 33 0.24
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 33 0.24
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 33 0.24
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 33 0.24
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 33 0.40
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.53
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 32 0.53
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 32 0.53
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 32 0.53
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 32 0.53
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein... 32 0.53
gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens] 32 0.53
gi|21687062 hypothetical protein LOC124402 [Homo sapiens] 32 0.53
>gi|239745682 PREDICTED: hypothetical protein XP_002343543 [Homo
sapiens]
Length = 302
Score = 624 bits (1609), Expect = e-179
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MATLFSTTLGRSCQVMDIWREAWWKLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPC 60
MATLFSTTLGRSCQVMDIWREAWWKLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPC
Sbjct: 1 MATLFSTTLGRSCQVMDIWREAWWKLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPC 60
Query: 61 WLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQ 120
WLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQ
Sbjct: 61 WLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQ 120
Query: 121 PLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQA 180
PLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQA
Sbjct: 121 PLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQA 180
Query: 181 QDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFS 240
QDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFS
Sbjct: 181 QDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFS 240
Query: 241 HLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEGW 300
HLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEGW
Sbjct: 241 HLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSGGEGW 300
Query: 301 TS 302
TS
Sbjct: 301 TS 302
>gi|239756699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 302
Score = 508 bits (1309), Expect = e-144
Identities = 245/247 (99%), Positives = 245/247 (99%), Gaps = 1/247 (0%)
Query: 57 IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA 116
IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA
Sbjct: 56 IRPCWLAASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRA 115
Query: 117 GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGA 176
GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSP LTGA
Sbjct: 116 GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPTLTGA 175
Query: 177 FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH 236
FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH
Sbjct: 176 FRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFH 235
Query: 237 LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG 296
LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG
Sbjct: 236 LEFSHLAPCGPQSLPERRLPVLADQPQLHLVVGTGIERGPSGHADAVETHLAQRCFAPSG 295
Query: 297 G-EGWTS 302
G EGWTS
Sbjct: 296 GEEGWTS 302
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 35.8 bits (81), Expect = 0.048
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 122 LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPD-TLSPALTGAFR 178
+C S + RP D+ + PGS +L L H R P A RPP +++ + A R
Sbjct: 689 VCESPAERPRDSLESFSCPGSMDEVLASLRHGRAPLRKVEVPAVRPPHASINEHILAAIR 748
Query: 179 QAQDAVALHPAVTREPDLVPGS 200
Q +HP + P P S
Sbjct: 749 QGVKLKKVHPDLGPNPSSKPTS 770
>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform b [Homo sapiens]
Length = 894
Score = 35.8 bits (81), Expect = 0.048
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 55 QEIRPCWLAA-SQAHSGSRSSIIGTRPPHFTAEL----PQGSDVHTSSSFSSWACSSSMP 109
+E + C L +QAH S I + A L PQG S ++
Sbjct: 697 EEEKRCLLKLPAQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLPVKNSSRTLV 756
Query: 110 GGNTRRAGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL---HTRIPPASHTAQR-P 165
G R A + +S S +TP+ G+P SS+ ++ PL ++ PP S R P
Sbjct: 757 QGCARHASGDRSEVSSLSSEAPETPESLGSPASSSSLMSPLEPGDPSQAPPNSEEGLREP 816
Query: 166 PDTLSPALT 174
P T P+LT
Sbjct: 817 PGTSRPSLT 825
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 35.8 bits (81), Expect = 0.048
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 55 QEIRPCWLAA-SQAHSGSRSSIIGTRPPHFTAEL----PQGSDVHTSSSFSSWACSSSMP 109
+E + C L +QAH S I + A L PQG S ++
Sbjct: 706 EEEKRCLLKLPAQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLPVKNSSRTLV 765
Query: 110 GGNTRRAGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL---HTRIPPASHTAQR-P 165
G R A + +S S +TP+ G+P SS+ ++ PL ++ PP S R P
Sbjct: 766 QGCARHASGDRSEVSSLSSEAPETPESLGSPASSSSLMSPLEPGDPSQAPPNSEEGLREP 825
Query: 166 PDTLSPALT 174
P T P+LT
Sbjct: 826 PGTSRPSLT 834
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 35.0 bits (79), Expect = 0.081
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 116 AGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTG 175
+G L A C +P P +P P L P + P S + RPP LS
Sbjct: 1008 SGALPSPDAPCLPVKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPPWLSELPEN 1067
Query: 176 AFRQAQDAVALHPAVTREPDLVPGSG--ALHRDPVAEPGVVLKEVPFAQFH 224
Q + V L PA+TR+ G L + + G+ L E P++ H
Sbjct: 1068 TSLQ-EHGVKLGPALTRKVSCARGVDLETLTENKLHAEGIDLTEEPYSDKH 1117
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 35.0 bits (79), Expect = 0.081
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 175 GAFRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRY 234
GA + Q ++ + P P P +GA H +PG+ P Q KQQ+PQ+ Y
Sbjct: 685 GAMQPQQPSLPVPP-----PPRAPQAGA-HTPLTPQPGLA----PQQQSPKQQQPQVQYY 734
Query: 235 FHLEFSHLAPCGPQS-LPERRLP---VLADQPQLHLVVGTGI 272
HL L P GPQ P+ R P V Q VG G+
Sbjct: 735 QHL----LQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGL 772
>gi|67782338 amyloid precursor-like protein 1 isoform 1 precursor
[Homo sapiens]
Length = 651
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 81 PHFTAEL-PQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDPGA 139
PH EL PQ ++ S + PGG++ G LQP + + P PK
Sbjct: 471 PHLAQELRPQIQELLHSEHLGPSELEAPAPGGSSEDKGGLQPPDSKDADTPMTLPKGSTE 530
Query: 140 PGSSTP---ILRPL------LHTRIPPA--SHTAQRPPDTLSPALTGAFRQA 180
+++P + PL ++ +P H+++ D L+PA TG R+A
Sbjct: 531 QDAASPEKEKMNPLEQYERKVNASVPRGFPFHSSEIQRDELAPAGTGVSREA 582
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 34.3 bits (77), Expect = 0.14
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 77 GTRPPH------FTAELPQGSDVHTS--------SSFSSWACSSSMPGGNTRRAGRLQPL 122
G RPP A P GSD+ S SS S A ++ +P +R G
Sbjct: 338 GPRPPGAESHGCLPATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTT 397
Query: 123 CASCSHRPFDT--------PKDPGAPGSSTPILRPLLHTRIPPASHTAQRP 165
+S S +T P PGA TP L H R+ P++H++++P
Sbjct: 398 TSSSSSSSSNTGLRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKP 448
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 34.3 bits (77), Expect = 0.14
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 26/140 (18%)
Query: 77 GTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRP---FDT 133
G++PPH + Q S H+ SS +C+ P P S S P
Sbjct: 826 GSQPPHSISTEFQTSHEHSVSSAFKNSCNIPSPPP--------LPCTESSSSMPGLGMVP 877
Query: 134 PKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHPAVTRE 193
P P PG + P L + PP T PP P L GA + P
Sbjct: 878 PPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPP--PPPLPGA--------GIPP----- 922
Query: 194 PDLVPGSGALHRDPVAEPGV 213
P +PG+G L P+ G+
Sbjct: 923 PPPLPGAGILPLPPLPGAGI 942
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 34.3 bits (77), Expect = 0.14
Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 15/163 (9%)
Query: 63 AASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFS--SWACSSSMPGGNTRRAGRLQ 120
A +QA + +++ + A+ S TSS S + SSS P T
Sbjct: 231 AQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTAT 290
Query: 121 PLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIP-----PASHTAQRPPDTLSPALTG 175
+ + S T +D P S+ + P + P P Q P TL PA+
Sbjct: 291 SVAQTVST---PTTQDQ-TPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPH 346
Query: 176 AFRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVVLKEV 218
+ Q A+ P V P VP G P+ PGV + ++
Sbjct: 347 SVPQPTTAIPAFPPVMVPPFRVPLPGM----PIPLPGVAMMQI 385
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 33.9 bits (76), Expect = 0.18
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 109 PGGNTRRAGRLQPLCAS--CSHRPFDTPKD-PGAPGSSTPILRPLLHTRIPPASHTAQ-- 163
PGG R +P+ AS S R P+ PGAPGSS P L P L P +A+
Sbjct: 114 PGG-----ARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPRPLSARPR 168
Query: 164 -RPPDTLSPALT 174
RPP ALT
Sbjct: 169 LRPPQPQPLALT 180
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.9 bits (76), Expect = 0.18
Identities = 38/170 (22%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 141 GSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHPAVTREPDLVPGS 200
GS P+++P PP Q+PP P G + P + P
Sbjct: 332 GSRHPLMQPPQQAPPPPQQQPPQQPPQQQPPPPPGLLVRQNSCPPALPRPQQGEAGTPSG 391
Query: 201 GALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPCGPQSLPERRLP---- 256
G P+ E P H+ + + Y FS P PQ P +RL
Sbjct: 392 GLQDGGPMLPSQHAQFEYP---IHRLENRSMHPYSEPVFSMQHP-PPQQAPNQRLQHFDA 447
Query: 257 ----VLADQPQLHLVVGTGIER----GPSGHADAVETHLAQRCFAPSGGE 298
+A +P+ G++R S H A++ HL+ + GE
Sbjct: 448 PPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNGALDNHLSPSAYPGLPGE 497
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 25 KLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPCWLAASQAH-SGSRSSIIGT----- 78
+L S T+S + GSR G T P + + + + SGSR+ + G+
Sbjct: 731 ELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQ 790
Query: 79 ---RPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRL------QPLCASCSHR 129
R PH+ ++ P T + +W + P +R +P + ++
Sbjct: 791 DGSRTPHYGSQTPLHDGSRTPAQSGAW--DPNNPNTPSRAEEEYEYAFDDEPTPSPQAYG 848
Query: 130 PFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPDTLSPALTGAFRQAQDAVALH 187
P+ PG P S+P + P + + P PA + + +P+ G+++ + + H
Sbjct: 849 GTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYH 908
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 25 KLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPCWLAASQAH-SGSRSSIIGT----- 78
+L S T+S + GSR G T P + + + + SGSR+ + G+
Sbjct: 735 ELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQ 794
Query: 79 ---RPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRL------QPLCASCSHR 129
R PH+ ++ P T + +W + P +R +P + ++
Sbjct: 795 DGSRTPHYGSQTPLHDGSRTPAQSGAW--DPNNPNTPSRAEEEYEYAFDDEPTPSPQAYG 852
Query: 130 PFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPDTLSPALTGAFRQAQDAVALH 187
P+ PG P S+P + P + + P PA + + +P+ G+++ + + H
Sbjct: 853 GTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYH 912
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 25 KLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPCWLAASQAH-SGSRSSIIGT----- 78
+L S T+S + GSR G T P + + + + SGSR+ + G+
Sbjct: 735 ELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQ 794
Query: 79 ---RPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRL------QPLCASCSHR 129
R PH+ ++ P T + +W + P +R +P + ++
Sbjct: 795 DGSRTPHYGSQTPLHDGSRTPAQSGAW--DPNNPNTPSRAEEEYEYAFDDEPTPSPQAYG 852
Query: 130 PFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPDTLSPALTGAFRQAQDAVALH 187
P+ PG P S+P + P + + P PA + + +P+ G+++ + + H
Sbjct: 853 GTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYH 912
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 19/180 (10%)
Query: 25 KLGSVAITVSSVASLVVGGGSRIVQGALGTQEIRPCWLAASQAH-SGSRSSIIGT----- 78
+L S T+S + GSR G T P + + + + SGSR+ + G+
Sbjct: 735 ELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQ 794
Query: 79 ---RPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRL------QPLCASCSHR 129
R PH+ ++ P T + +W + P +R +P + ++
Sbjct: 795 DGSRTPHYGSQTPLHDGSRTPAQSGAW--DPNNPNTPSRAEEEYEYAFDDEPTPSPQAYG 852
Query: 130 PFDTPKDPGAPGSSTPILRPLLHTRIP--PASHTAQRPPDTLSPALTGAFRQAQDAVALH 187
P+ PG P S+P + P + + P PA + + +P+ G+++ + + H
Sbjct: 853 GTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYH 912
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 33.5 bits (75), Expect = 0.24
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 81 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 137
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 214 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 273
Query: 138 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHPAVTR 192
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 274 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 326
Query: 193 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 248
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 327 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 378
Query: 249 SLPERRLPVLADQPQLH 265
+ P +LP PQ H
Sbjct: 379 TTPIPQLPA----PQAH 391
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 186 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 245
LHPA S AL P A P PFA FH P LE LA
Sbjct: 783 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 828
Query: 246 GPQSLPERRLPVLADQPQLH 265
GPQ PE P ++H
Sbjct: 829 GPQLRPEMSYPDRLAAERIH 848
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.24
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 81 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 137
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 768 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 827
Query: 138 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHPAVTR 192
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 828 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 880
Query: 193 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 248
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 881 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 932
Query: 249 SLPERRLPVLADQPQLH 265
+ P +LP PQ H
Sbjct: 933 TTPIPQLPA----PQAH 945
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 186 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 245
LHPA S AL P A P PFA FH P LE LA
Sbjct: 1337 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 1382
Query: 246 GPQSLPERRLPVLADQPQLH 265
GPQ PE P ++H
Sbjct: 1383 GPQLRPEMSYPDRLAAERIH 1402
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.5 bits (75), Expect = 0.24
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 31/197 (15%)
Query: 81 PHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSH-RPFDTPKDP-- 137
P TA PQGS + + A ++ +P + ++A L P H P +P P
Sbjct: 768 PSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ 827
Query: 138 ---GAPG--SSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHPAVTR 192
G+ G S+ +P LH + PP H+ Q P P F L P ++
Sbjct: 828 PLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPF-------GLPPQASQ 880
Query: 193 EPDLVPGSGALHRDPVAEPGVVLKEVPFAQ--FHKQQRP--QILRYFHLEFSHLAPCGPQ 248
G L P A ++P +Q QQ P Q L L H+ P P
Sbjct: 881 ------GQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKP--PP 932
Query: 249 SLPERRLPVLADQPQLH 265
+ P +LP PQ H
Sbjct: 933 TTPIPQLPA----PQAH 945
Score = 28.1 bits (61), Expect = 10.0
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 186 LHPAVTREPDLVPGSGALHRDPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPC 245
LHPA S AL P A P PFA FH P LE LA
Sbjct: 1337 LHPAANPMEHFARHS-ALTIPPTAGPH------PFASFHPGLNP-------LERERLALA 1382
Query: 246 GPQSLPERRLPVLADQPQLH 265
GPQ PE P ++H
Sbjct: 1383 GPQLRPEMSYPDRLAAERIH 1402
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 33.5 bits (75), Expect = 0.24
Identities = 49/194 (25%), Positives = 65/194 (33%), Gaps = 26/194 (13%)
Query: 90 GSDVHTSSSFSSWACSSSMPGGNTRRAGRLQPLCASCSHR---PFDTPKDPGAPGSSTPI 146
G D H+SSS SS + SSS +G P +H+ +++P GA S+
Sbjct: 52 GDDSHSSSSSSS-SSSSSSSSSCPGNSGDWDPSSFLSAHKLSGLWNSPHSSGAMPGSSLG 110
Query: 147 LRPLLHTRIPPASHTAQRPPDTLSP-ALTGAFRQAQDAVALHPAVTREPDLVPGSGALHR 205
P + P S Q T P + TG Q + HP+ P P L
Sbjct: 111 SPPTIPGEAFPVSEHHQHSDLTAPPNSPTGHHPQPASLIPSHPSSFGSP---PHPHLLPT 167
Query: 206 DPVAEPGVVLKEVPFAQFHKQQRPQILRYFHLEFSHLAPCGPQSLPERRLPVLADQPQLH 265
P A E P A P PC LP +P+L P
Sbjct: 168 TPAAPFPAQASECPVAAATAPHTP-------------GPCQSSHLPSTSMPLLKMPPPF- 213
Query: 266 LVVGTGIERGPSGH 279
+G SGH
Sbjct: 214 ----SGCSHPCSGH 223
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 32.7 bits (73), Expect = 0.40
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 42 GGGS-----RIVQGALGTQEIRPCWLAASQAHSGSRSSIIGT-RPPHFTAELPQGSDVHT 95
GGGS R ++ A +Q R + S A +G SS + + R P F+ G+
Sbjct: 410 GGGSPVPTRRALEMAQHSQRSR----SVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEA 465
Query: 96 SSSFSSWACSSSMPGGNTRRAGR-LQPLCASCSHRPFDTPKDPGAPGSS--TPILRPLLH 152
S + + ++P R G QP S P P PG+P SS TP+ PL
Sbjct: 466 RGGGSPTSKTQTLPSRGPRGGGAGEQPPPPSARSTPLPGP--PGSPRSSGGTPLHSPLHT 523
Query: 153 TRIPPASHTAQRPPDTLSPALTGA 176
R P PP + + GA
Sbjct: 524 PRASPTGTPGTTPPPSPGGGVGGA 547
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.3 bits (72), Expect = 0.53
Identities = 34/130 (26%), Positives = 42/130 (32%), Gaps = 5/130 (3%)
Query: 130 PFDTPKDPGAPGSST-PILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQDAVALHP 188
P P+ P P P H +PP PP T P L G+ ++Q +
Sbjct: 1281 PLPPPRPPRPPSPPPEPETTDASHPSVPPEPLAEDHPPHT--PGLCGSLAKSQSTETVPA 1338
Query: 189 AVTREPDLVPGSGALHRDPVAEPGVVLK-EVPFAQFHKQQRPQIL-RYFHLEFSHLAPCG 246
EP L GS L PG P P+ R F + P G
Sbjct: 1339 TPGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSG 1398
Query: 247 PQSLPERRLP 256
P LP LP
Sbjct: 1399 PLLLPVCPLP 1408
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 32.3 bits (72), Expect = 0.53
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 97 SSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPL-----L 151
S S W SSS P + A RL P +C+ + +TP P A S+P+ P L
Sbjct: 207 SDASLWTYSSS-PDDSEPDAPRLLPSPVTCTPKEGETPPAPAA--LSSPLAVPALSASSL 263
Query: 152 HTRIPPASHTAQRPPDTLSP-------ALTGAFRQAQDA 183
+R PP + +P + +P AL QAQ A
Sbjct: 264 SSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSA 302
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 32.3 bits (72), Expect = 0.53
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 97 SSFSSWACSSSMPGGNTRRAGRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPL-----L 151
S S W SSS P + A RL P +C+ + +TP P A S+P+ P L
Sbjct: 212 SDASLWTYSSS-PDDSEPDAPRLLPSPVTCTPKEGETPPAPAA--LSSPLAVPALSASSL 268
Query: 152 HTRIPPASHTAQRPPDTLSP-------ALTGAFRQAQDA 183
+R PP + +P + +P AL QAQ A
Sbjct: 269 SSRAPPPAEVRVQPQLSRTPQAAQQTEALASTGSQAQSA 307
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 32.3 bits (72), Expect = 0.53
Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 15/159 (9%)
Query: 63 AASQAHSGSRSSIIGTRPPHFTAELPQGSDVHTSSSFS--SWACSSSMPGGNTRRAGRLQ 120
A +QA + +++ + A+ S TSS S + SSS P T
Sbjct: 231 AQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTAT 290
Query: 121 PLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIP-----PASHTAQRPPDTLSPALTG 175
+ + S T +D P S+ + P + P P Q P TL PA+
Sbjct: 291 SVAQTVST---PTTQDQ-TPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPH 346
Query: 176 AFRQAQDAVALHPAVTREPDLVPGSGALHRDPVAEPGVV 214
+ Q A+ P V P VP G P+ PGV+
Sbjct: 347 SVPQPTTAIPAFPPVMVPPFRVPLPGM----PIPLPGVL 381
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 93 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 151
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 66 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 125
Query: 152 HTRI 155
T I
Sbjct: 126 RTTI 129
>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
[Homo sapiens]
Length = 480
Score = 32.3 bits (72), Expect = 0.53
Identities = 45/138 (32%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 64 ASQAHS--GSRSSIIGTRPPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGRLQP 121
ASQA S G RSS P A LP G + +SSS SS SSS G RL P
Sbjct: 206 ASQAGSLVGERSS----GQPCPQARLPSGDEASSSSSSSS--SSSSEEGPIPGPQSRLSP 259
Query: 122 LCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPASHTAQRPPDTLSPALTGAFRQAQ 181
A+ + GAP +STP L A T+ P + P F Q
Sbjct: 260 TAATVQFK-------CGAP-ASTPYL------LTSQAQDTSGSPSERARPLPGSEFFSCQ 305
Query: 182 DAVALHPAVTREPDLVPG 199
+ A+ + LVPG
Sbjct: 306 NCEAVAGCSSGLDSLVPG 323
>gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens]
Length = 89
Score = 32.3 bits (72), Expect = 0.53
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 93 VHTSSSFSSWACSSSMPGGNTRRA-GRLQPLCASCSHRPFDTPKDPGAPGSSTPILRPLL 151
++ S SS AC + G + + G+L +C SC + P P GSS LRP L
Sbjct: 14 MYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGL 73
Query: 152 HTRI 155
T I
Sbjct: 74 RTTI 77
>gi|21687062 hypothetical protein LOC124402 [Homo sapiens]
Length = 177
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 63 AASQAHSGSRSSIIGTR----PPHFTAELPQGSDVHTSSSFSSWACSSSMPGGNTRRAGR 118
A+ HSG S + PPHF P + +SS+ SSW ++S PGG
Sbjct: 87 ASESFHSGGSGSPMAATATSPPPHF----PHAAT--SSSAASSWPTAASPPGGPQHH--- 137
Query: 119 LQPLCASCSHRPFDTPKDPGAPGSSTPILRPLLHTRIPPA 158
QP P TP P +P S P L P T P A
Sbjct: 138 -QP------QPPLWTPTPP-SPASDWPPLAPQQATSEPRA 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,892,006
Number of Sequences: 37866
Number of extensions: 823087
Number of successful extensions: 2898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 2759
Number of HSP's gapped (non-prelim): 210
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.