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Search of human proteins with 239745511
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 878 0.0
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 878 0.0
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 488 e-138
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 60 4e-09
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 1e-06
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 1e-06
gi|55750053 atrophin-1 [Homo sapiens] 51 2e-06
gi|55750041 atrophin-1 [Homo sapiens] 51 2e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 50 4e-06
gi|38787970 tensin like C1 domain containing phosphatase isoform... 50 5e-06
gi|38787957 tensin like C1 domain containing phosphatase isoform... 50 5e-06
gi|38787941 tensin like C1 domain containing phosphatase isoform... 50 5e-06
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 50 5e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 50 5e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 50 5e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 49 7e-06
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 49 9e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 9e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 3e-05
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 47 3e-05
gi|157168329 formin 1 [Homo sapiens] 46 6e-05
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 46 6e-05
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 46 6e-05
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 46 6e-05
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 46 6e-05
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 45 1e-04
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 45 1e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 45 1e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 1e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 45 2e-04
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 878 bits (2268), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ 240
ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ
Sbjct: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ 240
Query: 241 AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW
Sbjct: 241 AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
Query: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR
Sbjct: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
Query: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP
Sbjct: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
Query: 421 SSGVVRN 427
SSGVVRN
Sbjct: 421 SSGVVRN 427
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 878 bits (2268), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ 240
ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ
Sbjct: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQ 240
Query: 241 AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW
Sbjct: 241 AGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
Query: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR
Sbjct: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
Query: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP
Sbjct: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
Query: 421 SSGVVRN 427
SSGVVRN
Sbjct: 421 SSGVVRN 427
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 488 bits (1256), Expect = e-138
Identities = 238/245 (97%), Positives = 239/245 (97%), Gaps = 4/245 (1%)
Query: 187 LTSW--LWVI--APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 242
L+SW LW APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG
Sbjct: 293 LSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAG 352
Query: 243 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI
Sbjct: 353 WRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 412
Query: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 362
SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL
Sbjct: 413 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPL 472
Query: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS
Sbjct: 473 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 532
Query: 423 GVVRN 427
GVVRN
Sbjct: 533 GVVRN 537
Score = 369 bits (948), Expect = e-102
Identities = 200/257 (77%), Positives = 206/257 (80%), Gaps = 15/257 (5%)
Query: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR
Sbjct: 1 MASRRGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRR 60
Query: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS
Sbjct: 61 RQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS 120
Query: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL
Sbjct: 121 PRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFL 180
Query: 181 ELPSKCLTSWLWVIAPRPGPAERPFPGE-----KGPPGAAASAVSGSWLPIMLESEAGGT 235
EL V+ R G A P G+ +G G A A+S P G
Sbjct: 181 ELKEVDAVDEQDVV--REGEAPTPPRGKTSFRRQGRGGGGARAIS----PPPTVCRRG-- 232
Query: 236 DAAGQAGWRSPGKSMGD 252
G+ GW G + D
Sbjct: 233 --RGRLGWGGAGGQVQD 247
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 60.1 bits (144), Expect = 4e-09
Identities = 111/418 (26%), Positives = 148/418 (35%), Gaps = 70/418 (16%)
Query: 51 ASRARAWRRRRQAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNS 110
A+RA R G R P P V AA AG R+P L +
Sbjct: 18 AARAPGLLTPRPPGSPR--PPPPVT-PAALRVLGAAGAVGRKP------LAERAGGIGGA 68
Query: 111 KTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGA-------TLGGTVLPP--AARTPRDG 161
P + A P S +SS + SR P SG G T G V P A+ T R G
Sbjct: 69 TIPESAPRAGPTRSAGTSSRNPA-SRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 162 -LRDRG-RLLSRNSTARRSFLELPSKCLTS--------------------------WLWV 193
L +G R+ + + AR E P + S V
Sbjct: 128 PLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV 187
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PRP P+ RP P +GP + +SA S A +AG R +S+ +
Sbjct: 188 GLPRPAPSARPRPPTEGPRKSVSSASEHS--TTEPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPS-PVSFSAAKLRSDRGGPSWSISELSVDPQGS 312
A P L +P R G + A PS P LR + P + ++ P S
Sbjct: 246 ATP---LSSP-ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS 301
Query: 313 T--VKQIPSSLQSREVPPTD------APSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSS 364
+ PS ++R VPP D +L SPP P P P S P S
Sbjct: 302 SPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLP-------LAPPSPSAPPSL 354
Query: 365 HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
+LPSP +PP P + P Q P + +S SL PP+ + SS
Sbjct: 355 QTLPSPP-ATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSS 411
Score = 40.4 bits (93), Expect = 0.003
Identities = 112/474 (23%), Positives = 162/474 (34%), Gaps = 97/474 (20%)
Query: 19 AAGGRAAARGS---VPQPVKSSPPFRRSARPTDSLASRAR--------AWRRRRQAG--C 65
A R+ A G+ +P+P S+ P + P S++S + A RRR AG
Sbjct: 175 AMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGL 234
Query: 66 LRVVPRPGVARAAACCACACAGRTNR----------QPRPFQARLLA---AVPSASNSKT 112
R R + A + A +G + R QP+P + L P ++
Sbjct: 235 QRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAP 294
Query: 113 PCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLP-PAARTPRDGLRDRGRLLSR 171
+S+SP L+ S S ++ P L T+ P P TP L
Sbjct: 295 ALGPLSSSP-LATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLP-------LAPP 346
Query: 172 NSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESE 231
+ +A S LPS T P P P + PP PI +
Sbjct: 347 SPSAPPSLQTLPSPPATP------PSQAPPSMTTPPMQAPPSLQTIP------PIQVPHS 394
Query: 232 AGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR-------------------PGRGSA 272
T + QA P + SLG+P L+ P R ++
Sbjct: 395 L--TSPSLQA---PPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPAS 449
Query: 273 NQTPGEAFPSPVSFSAAKLRSDRGGPSWS--ISELSVDPQ---GSTVKQIPSS-LQSREV 326
+P+S A+ P+ S S L++ P S P + L S +
Sbjct: 450 TPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIM 509
Query: 327 PPTD-----APSLLASPPSGLPRPGTRWFRSFLPRP---HSRPLSSHSLPSPKGCSP--- 375
PP + AP L +PP+ L P S P P S PL++ L +P +P
Sbjct: 510 PPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPL 569
Query: 376 ---------PPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
PPP P S A P + A P L P L TPP + P
Sbjct: 570 QAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPP 623
Score = 37.4 bits (85), Expect = 0.026
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 23/174 (13%)
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTV 314
AP +P + P +Q P P+ + S PS + + P +
Sbjct: 675 APFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPP 734
Query: 315 KQIPSS-------LQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSL 367
Q+P S S PP P LLA+PP +P P S P+S +
Sbjct: 735 LQVPPSPPASPPMSPSATPPPRVPP-LLAAPPLQVPP----------SPPASLPMSPLAK 783
Query: 368 PSPKGCSPPPPVDPGSSAAPT-SGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
P P+ +PP P A P+ SF QA P P+ P S L TPP + P
Sbjct: 784 PPPQ--APPALATPPLQALPSPPASFPGQA-PFSPSASLPMS-PLATPPPQAPP 833
Score = 35.0 bits (79), Expect = 0.13
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 306 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP--LS 363
S+ P P + E PP AP L +PPS L P S P P L+
Sbjct: 540 SLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALA 599
Query: 364 S---HSLPSP---KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRS 410
S LPSP +PPP P + P A P L PS ++
Sbjct: 600 SPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQA 652
Score = 33.9 bits (76), Expect = 0.29
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
Query: 259 SLGNPRLRPGRGSANQTPGEAFPS----PVSFSAAKLRSDRGGPSWSISELSVDPQGSTV 314
SL P L+ S P E PS P+ ++A L + E P +
Sbjct: 517 SLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPH-------LETPPCPAPCPL 569
Query: 315 KQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS 374
+ PS L + PP + PS +A+PP P LP P PL++ +P +
Sbjct: 570 QAPPSPLTT---PPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLA 626
Query: 375 PPPPVDPGSSAAPTSGSFKNQAYPTLPN 402
PP P S A S P PN
Sbjct: 627 LPPLQAPPSPPASPPLSPLATPSPQAPN 654
Score = 30.8 bits (68), Expect = 2.5
Identities = 44/154 (28%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 274 QTPGE-AFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 332
+TP A P P + A +G PS +S L+ P + LQ+ PP P
Sbjct: 582 ETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPP 641
Query: 333 -SLLASPPSGLPRP-GTRWFRSFLPRPHSRPLSS-HSLPSPKGCSP---PPPVDPGSSAA 386
S LA+P P ++ P S P+ + S P+ SP PP P S AA
Sbjct: 642 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAA 701
Query: 387 PTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
P P P P S S PP P
Sbjct: 702 PP------LQVPPSPPASPPMSPSATPPPQAPPP 729
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 51.6 bits (122), Expect = 1e-06
Identities = 96/391 (24%), Positives = 144/391 (36%), Gaps = 31/391 (7%)
Query: 20 AGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAGCLRVVPRPGVARAAA 79
AGG A ++P+ + P R + + + ASR A R +A P +
Sbjct: 62 AGGIGGA--TIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAP-----PAKNTSPGPV 114
Query: 80 CCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPT 139
+G T P + ++A + + K + +P+ S S+ + R S GPT
Sbjct: 115 SSPGRASGTTRPGPLGQKGLRISAEETVARGKA-----TEAPKRSALSAGARRDTS-GPT 168
Query: 140 SGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPG 199
G T P AR R + G S R E P K ++S P
Sbjct: 169 PG-------TPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS 221
Query: 200 PAERPFPGEKGPPGAAAS-AVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGG 258
PA R P G AS ++S S P+ + +G + A G R+P
Sbjct: 222 PAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPS-ARGTP--RAPAHPSQPKPKGLQ 278
Query: 259 SLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSWSISELSVDPQGSTVKQI 317
+L P++ P R A G SP++ S + + P+ + S +
Sbjct: 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPL 338
Query: 318 PSSLQSREVPPT--DAPSLLASPPS----GLPRPGTRWFRSFLPRPHSRPLSSHSLPSPK 371
P + S PP+ PS A+PPS L P + SFLP P PL++ +P
Sbjct: 339 PLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 398
Query: 372 GCSPPPPVDPGSSAAPTSGSFKNQAYPTLPN 402
+ PP P S A S P PN
Sbjct: 399 ALALPPLQAPPSPPASPPLSPLATPSPQAPN 429
Score = 43.9 bits (102), Expect = 3e-04
Identities = 63/238 (26%), Positives = 85/238 (35%), Gaps = 25/238 (10%)
Query: 193 VIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGD 252
++ PRP + RP P P AA V G+ + + A G A G
Sbjct: 24 LLTPRPPGSPRPPP----PVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGP 79
Query: 253 AAAPGGSLGNPRLRP---GRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDP 309
+ G S NP RP GRG P PVS + R GP L
Sbjct: 80 TRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP------LGQKG 133
Query: 310 QGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRPLSSH 365
+ ++ + ++ E P A S A + P PGT P P SR +
Sbjct: 134 LRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGT-------PSPAMARRSRAAGTE 186
Query: 366 -SLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
LP P + P P G + +S S + P+ RR PS+ P RS SS
Sbjct: 187 VGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Score = 32.7 bits (73), Expect = 0.65
Identities = 112/484 (23%), Positives = 155/484 (32%), Gaps = 72/484 (14%)
Query: 5 RGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAG 64
RG T +R L+AG R G P P SP R +R + R R
Sbjct: 144 RGKATEAPKR-SALSAGARRDTSG--PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP 200
Query: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
PR V+ A+ + R+P A S S+S TP + + S +
Sbjct: 201 PTEG-PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 259
Query: 125 KASSSSSRCWSRGPTSGLGATLGGTVLPPAA-RTPRDGLRDRGRLLSRNSTARRSFLELP 183
+ + + S+ GL A V PP P G L + + +A P
Sbjct: 260 RGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPP 319
Query: 184 -------SKCLTSWLWVIAPR--PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLES 230
S LT L P P P+ P P P + A+ GS P + +
Sbjct: 320 TLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGS--PTLQAT 377
Query: 231 EA-----GGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAF----- 280
+ + A P ++ AP +P L P + Q P
Sbjct: 378 HSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQ 437
Query: 281 ------PSP-VSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSS------LQSREVP 327
PSP V + S PS + + + Q+P S + P
Sbjct: 438 APFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP 497
Query: 328 PTDAPSLLASPPSGLPRP--------GTRWFRSFLPRPHSRP-----LSSHSLPSPKGCS 374
P AP LA+PP L +P T ++ P S P S SLP +
Sbjct: 498 PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLAT 557
Query: 375 PPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWT----------------PPNRR 418
PPP P +A A PTL R P + T PP R
Sbjct: 558 PPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSR 617
Query: 419 SPSS 422
SPSS
Sbjct: 618 SPSS 621
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/216 (27%), Positives = 79/216 (36%), Gaps = 15/216 (6%)
Query: 196 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 255
PRP P+ RP P +GP + +SA S A +AG R +S+ +A
Sbjct: 181 PRPAPSARPRPPTEGPRKSVSSASEHSTTEP--SPAARRRPSAGGGLQRPASRSLSSSAT 238
Query: 256 PGGS--------LGNPRLRPGRGSANQTPG-EAFPSPVSFSAAKLRSDRGGPSWSISELS 306
P S G PR P S + G +A P K + GP S +
Sbjct: 239 PLSSPARSGPSARGTPRA-PAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 297
Query: 307 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 366
P P SLQ+ PP PS + L P + SFLP P PL++
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPS---QATTSLGSPTLQATHSFLPSPPLSPLATPP 354
Query: 367 LPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPN 402
+P + PP P S A S P PN
Sbjct: 355 PQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPN 390
Score = 49.7 bits (117), Expect = 5e-06
Identities = 67/243 (27%), Positives = 87/243 (35%), Gaps = 26/243 (10%)
Query: 195 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
APR GP P G A A + S P+ A GT G G + S +
Sbjct: 74 APRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETV 133
Query: 255 APGGSLGNPR---LRPG--RGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDP 309
A G + P+ L G R ++ TPG P+ S A ++ G P + S P
Sbjct: 134 ARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRA-AGTEVGLPRPAPSARPRPP 192
Query: 310 QGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSS----- 364
K + S+ + P+ A S GL RP +R S P S P S
Sbjct: 193 TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS-SATPLSSPARSGPSAR 251
Query: 365 --------HSLPSPKGCS---PPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWT 413
S P PKG PP P AAP G + T P+ P S S
Sbjct: 252 GTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT-PSPSAPPSPS--A 308
Query: 414 PPN 416
PP+
Sbjct: 309 PPS 311
Score = 48.9 bits (115), Expect = 9e-06
Identities = 114/436 (26%), Positives = 154/436 (35%), Gaps = 67/436 (15%)
Query: 20 AGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAGCLRVVPRPGVARAAA 79
AGG A ++P+ + P R S P RA + V PG A
Sbjct: 62 AGGIGGA--TIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGP----VSSPGRA---- 111
Query: 80 CCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPT 139
+G T P + ++A + + K + +P+ S S+ + R S GPT
Sbjct: 112 ------SGTTRPGPLGQKGLRISAEETVARGKA-----TEAPKRSALSAGARRDTS-GPT 159
Query: 140 SGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPG 199
G T P AR R + G S R E P K ++S P
Sbjct: 160 PG-------TPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS 212
Query: 200 PAERPFPGEKGPPGAAAS-AVSGSWLPIMLESEAG----GTDAA----------GQAGWR 244
PA R P G AS ++S S P+ + +G GT A G R
Sbjct: 213 PAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR 272
Query: 245 SPGKS--MGDAAAPGGSLGNPRLRPGRGSANQTPG-----EAFPSPVSFSAAKLRSDRGG 297
P + DAA G L + L SA +P + PSP + ++ + G
Sbjct: 273 PPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 332
Query: 298 PSWSI--SELSVDPQGSTVKQIPSSLQSREVPPTDA-PSLLASPP-SGLPRPGTRWFRS- 352
P+ S L P P + + +PP A PS ASPP S L P + +
Sbjct: 333 PTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNAL 392
Query: 353 ---FLPRPHSRPLSSHSLPSPKGCSPP--PPVDPGS---SAAPTSGSFKNQAYPTLPNRR 404
L P S P S P SPP PPV P + S AP S + P P
Sbjct: 393 AVHLLQAPFSPPPSP---PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS 449
Query: 405 WPSSRSLWTPPNRRSP 420
P S S PP P
Sbjct: 450 PPMSPSATPPPQAPPP 465
Score = 36.6 bits (83), Expect = 0.045
Identities = 109/465 (23%), Positives = 148/465 (31%), Gaps = 64/465 (13%)
Query: 5 RGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAG 64
RG T +R L+AG R G P P SP R +R + R R
Sbjct: 135 RGKATEAPKR-SALSAGARRDTSG--PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP 191
Query: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
PR V+ A+ + R+P A S S+S TP + + S +
Sbjct: 192 PTEG-PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSA 250
Query: 125 KASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPS 184
+ + + S+ GL A + PP PR LS + A S PS
Sbjct: 251 RGTPRAPAHPSQPKPKGLQA-----LRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPS 305
Query: 185 KCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWR 244
L + P P P G+ + S+LP S A
Sbjct: 306 PSAPPSLQTL---PSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPL-----ATPPPQA 357
Query: 245 SPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAF-----------PSP-VSFSAAKLR 292
P ++ AP +P L P + Q P PSP V +
Sbjct: 358 PPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPA 417
Query: 293 SDRGGPSWSISELSVDPQGSTVKQIPSS------LQSREVPPTDAPSLLASPPSGLPRP- 345
S PS + + + Q+P S + PP AP LA+PP L +P
Sbjct: 418 SPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP 477
Query: 346 -------GTRWFRSFLPRPHSRP-----LSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFK 393
T ++ P S P S SLP +PPP P +A
Sbjct: 478 PQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPS 537
Query: 394 NQAYPTLPNRRWPSSRSLWT----------------PPNRRSPSS 422
A PTL R P + T PP RSPSS
Sbjct: 538 PPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSS 582
Score = 35.8 bits (81), Expect = 0.076
Identities = 62/246 (25%), Positives = 85/246 (34%), Gaps = 50/246 (20%)
Query: 193 VIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGT------DAAGQAG---- 242
++ PRP + RP P P +G+ L AGG ++A +AG
Sbjct: 24 LLTPRPPGSPRP-PPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRT 82
Query: 243 WRSPGKSMGDAAAPGGSLG-NPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWS 301
R P G+ A P + P PGR S PG + SA + + RG
Sbjct: 83 SRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVA-RG----- 136
Query: 302 ISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP---- 357
++ E P A S A + P PGT P P
Sbjct: 137 --------------------KATEAPKRSALSAGARRDTSGPTPGT-------PSPAMAR 169
Query: 358 HSRPLSSH-SLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPN 416
SR + LP P + P P G + +S S + P+ RR PS+ P
Sbjct: 170 RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPA 229
Query: 417 RRSPSS 422
RS SS
Sbjct: 230 SRSLSS 235
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 51.2 bits (121), Expect = 2e-06
Identities = 78/317 (24%), Positives = 112/317 (35%), Gaps = 45/317 (14%)
Query: 120 SPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARR-- 177
SP + S SS S+GP + PP+ + P +ST R+
Sbjct: 137 SPGSVENDSDSSSGLSQGPARPYHPP---PLFPPSPQPP-------------DSTPRQPE 180
Query: 178 -SFLELPSKCLTSWLWVIAPRPGPAERPF---PGEKGP-----PGAAASAVSGSWLPIML 228
SF PS T + AP P R F PG P PG +SG P M
Sbjct: 181 ASFEPHPSVTPTGYH---APMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG---PPMG 234
Query: 229 ESEAGGTDAAG--QAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF 286
G + G G + P + + + G+ G P +P + P P +F
Sbjct: 235 PKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANF 294
Query: 287 SAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPG 346
++ S P G + +P L S P + GLP PG
Sbjct: 295 PHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS--------PHAMGQGMGGLP-PG 345
Query: 347 TRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP-NRRW 405
+ P PHS P +S S P+P P S+AA +S S + + P ++
Sbjct: 346 PEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQAL 405
Query: 406 PSSRSLWTPPNRRSPSS 422
PS + PP S S+
Sbjct: 406 PSYPHSFPPPTSLSVSN 422
Score = 34.7 bits (78), Expect = 0.17
Identities = 55/204 (26%), Positives = 71/204 (34%), Gaps = 32/204 (15%)
Query: 195 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
+P GP P+P P +SA + + + S AG A+ PG
Sbjct: 589 SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTAS------PPGPPPYGKR 642
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRG-----GP-SWSISELSVD 308
AP PG PG SP SF RG GP ++ +V
Sbjct: 643 APS---------PGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVG 693
Query: 309 PQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLP 368
P G PS L S PP A+P SG P T+ + + P S +P
Sbjct: 694 P-GPLPPAGPSGLPSLPPPP-------AAPASGPPLSATQ-IKQEPAEEYETPES--PVP 742
Query: 369 SPKGCSPPPPVDPGSSAAPTSGSF 392
+ SPPP V S A S F
Sbjct: 743 PARSPSPPPKVVDVPSHASQSARF 766
Score = 33.9 bits (76), Expect = 0.29
Identities = 53/187 (28%), Positives = 62/187 (33%), Gaps = 48/187 (25%)
Query: 198 PGPAERPFPGEKG-PPGAAASAVSGSWLPIMLESEAGGTDAAGQA-GWRSPGKSMGDAAA 255
P PA RP PPG A + G LP A GQ G PG G A
Sbjct: 303 PPPALRPLNNASASPPGLGAQPLPGH-LP--------SPHAMGQGMGGLPPGPEKGPTLA 353
Query: 256 PGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVK 315
P +P P S+ P FP S S++ S
Sbjct: 354 P-----SPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSS-------------------- 388
Query: 316 QIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPS----PK 371
SS S P A L S P P P T S P +++P SLPS +
Sbjct: 389 ---SSSSSSSASPFPASQALPSYPHSFP-PPTSLSVSNQPPKYTQP----SLPSQAVWSQ 440
Query: 372 GCSPPPP 378
G PPPP
Sbjct: 441 GPPPPPP 447
Score = 32.7 bits (73), Expect = 0.65
Identities = 91/369 (24%), Positives = 127/369 (34%), Gaps = 89/369 (24%)
Query: 77 AAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS---PRLSKASSSSSRC 133
+++ A + + ++ PF A A+PS +S P T +S S P+ ++ S S
Sbjct: 380 SSSAAASSSSSSSSSSASPFPAS--QALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV 437
Query: 134 WSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWV 193
WS+GP PP GRLL+ NS A
Sbjct: 438 WSQGPPP-----------PPPY----------GRLLA-NSNAH----------------- 458
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP FP G A VS + + Q + + G
Sbjct: 459 ----PGP----FPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPP 510
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW------SISELSV 307
P G+ +P G ++ A P +S S LR GP+ +S
Sbjct: 511 --PPGAFPHPL----EGGSSH---HAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQA 561
Query: 308 DPQGSTVKQIP--SSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRP 361
P G V SS S+ P PS + P G P P F P P S
Sbjct: 562 GPNGPPVSSSSNSSSSTSQGSYPCSHPSP-SQGPQGAPYP-------FPPVPTVTTSSAT 613
Query: 362 LSS-----HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPN 416
LS+ S P+ + PP P AP+ G++K P PS R+ TPP
Sbjct: 614 LSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRT-GTPPG 672
Query: 417 RR--SPSSG 423
R SP +G
Sbjct: 673 YRGTSPPAG 681
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 51.2 bits (121), Expect = 2e-06
Identities = 78/317 (24%), Positives = 112/317 (35%), Gaps = 45/317 (14%)
Query: 120 SPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARR-- 177
SP + S SS S+GP + PP+ + P +ST R+
Sbjct: 137 SPGSVENDSDSSSGLSQGPARPYHPP---PLFPPSPQPP-------------DSTPRQPE 180
Query: 178 -SFLELPSKCLTSWLWVIAPRPGPAERPF---PGEKGP-----PGAAASAVSGSWLPIML 228
SF PS T + AP P R F PG P PG +SG P M
Sbjct: 181 ASFEPHPSVTPTGYH---APMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG---PPMG 234
Query: 229 ESEAGGTDAAG--QAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF 286
G + G G + P + + + G+ G P +P + P P +F
Sbjct: 235 PKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANF 294
Query: 287 SAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPG 346
++ S P G + +P L S P + GLP PG
Sbjct: 295 PHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS--------PHAMGQGMGGLP-PG 345
Query: 347 TRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP-NRRW 405
+ P PHS P +S S P+P P S+AA +S S + + P ++
Sbjct: 346 PEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQAL 405
Query: 406 PSSRSLWTPPNRRSPSS 422
PS + PP S S+
Sbjct: 406 PSYPHSFPPPTSLSVSN 422
Score = 34.7 bits (78), Expect = 0.17
Identities = 55/204 (26%), Positives = 71/204 (34%), Gaps = 32/204 (15%)
Query: 195 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
+P GP P+P P +SA + + + S AG A+ PG
Sbjct: 589 SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTAS------PPGPPPYGKR 642
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRG-----GP-SWSISELSVD 308
AP PG PG SP SF RG GP ++ +V
Sbjct: 643 APS---------PGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVG 693
Query: 309 PQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLP 368
P G PS L S PP A+P SG P T+ + + P S +P
Sbjct: 694 P-GPLPPAGPSGLPSLPPPP-------AAPASGPPLSATQ-IKQEPAEEYETPES--PVP 742
Query: 369 SPKGCSPPPPVDPGSSAAPTSGSF 392
+ SPPP V S A S F
Sbjct: 743 PARSPSPPPKVVDVPSHASQSARF 766
Score = 33.9 bits (76), Expect = 0.29
Identities = 53/187 (28%), Positives = 62/187 (33%), Gaps = 48/187 (25%)
Query: 198 PGPAERPFPGEKG-PPGAAASAVSGSWLPIMLESEAGGTDAAGQA-GWRSPGKSMGDAAA 255
P PA RP PPG A + G LP A GQ G PG G A
Sbjct: 303 PPPALRPLNNASASPPGLGAQPLPGH-LP--------SPHAMGQGMGGLPPGPEKGPTLA 353
Query: 256 PGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVK 315
P +P P S+ P FP S S++ S
Sbjct: 354 P-----SPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSS-------------------- 388
Query: 316 QIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPS----PK 371
SS S P A L S P P P T S P +++P SLPS +
Sbjct: 389 ---SSSSSSSASPFPASQALPSYPHSFP-PPTSLSVSNQPPKYTQP----SLPSQAVWSQ 440
Query: 372 GCSPPPP 378
G PPPP
Sbjct: 441 GPPPPPP 447
Score = 32.7 bits (73), Expect = 0.65
Identities = 91/369 (24%), Positives = 127/369 (34%), Gaps = 89/369 (24%)
Query: 77 AAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSAS---PRLSKASSSSSRC 133
+++ A + + ++ PF A A+PS +S P T +S S P+ ++ S S
Sbjct: 380 SSSAAASSSSSSSSSSASPFPAS--QALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV 437
Query: 134 WSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWV 193
WS+GP PP GRLL+ NS A
Sbjct: 438 WSQGPPP-----------PPPY----------GRLLA-NSNAH----------------- 458
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP FP G A VS + + Q + + G
Sbjct: 459 ----PGP----FPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPP 510
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW------SISELSV 307
P G+ +P G ++ A P +S S LR GP+ +S
Sbjct: 511 --PPGAFPHPL----EGGSSH---HAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQA 561
Query: 308 DPQGSTVKQIP--SSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP----HSRP 361
P G V SS S+ P PS + P G P P F P P S
Sbjct: 562 GPNGPPVSSSSNSSSSTSQGSYPCSHPSP-SQGPQGAPYP-------FPPVPTVTTSSAT 613
Query: 362 LSS-----HSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPN 416
LS+ S P+ + PP P AP+ G++K P PS R+ TPP
Sbjct: 614 LSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRT-GTPPG 672
Query: 417 RR--SPSSG 423
R SP +G
Sbjct: 673 YRGTSPPAG 681
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 50.1 bits (118), Expect = 4e-06
Identities = 66/248 (26%), Positives = 86/248 (34%), Gaps = 49/248 (19%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMG-- 251
PGP P FPG +GPPG S LE G G G P G
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPA------LEGPKGNPGPQGPPGRPGPTGFQGLP 1272
Query: 252 DAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW-------SISE 304
P G GN ++ +G+ Q P L+ D+G P ++
Sbjct: 1273 GPEGPPGLPGNGGIKGEKGNPGQPGLPGLPG--------LKGDQGPPGLQGNPGRPGLNG 1324
Query: 305 LSVDPQGSTVKQIPSSLQSREVP----PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHS 359
+ DP V P VP P P L+ P P GLP P +S + + +
Sbjct: 1325 MKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDA 1381
Query: 360 RPLSSHSLPSPKGCSPP-----------PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPS 407
P P KG P PP DPG + P G+ + P LP + P
Sbjct: 1382 GPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PG 1439
Query: 408 SRSLWTPP 415
+R L PP
Sbjct: 1440 TRGLDGPP 1447
Score = 38.9 bits (89), Expect = 0.009
Identities = 59/242 (24%), Positives = 74/242 (30%), Gaps = 59/242 (24%)
Query: 196 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 255
P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 225 PKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP 280
Query: 256 PGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGGPS 299
PGG G R +PG+ N PG +P K + D G P
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 300 WSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GLPR 344
+ G T+ + +P R P P L PP G P
Sbjct: 341 PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPG 400
Query: 345 -PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPVDP 381
PG R + LP P P H PS + C P PP P
Sbjct: 401 FPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPGPP 459
Query: 382 GS 383
GS
Sbjct: 460 GS 461
Score = 36.6 bits (83), Expect = 0.045
Identities = 57/209 (27%), Positives = 69/209 (33%), Gaps = 26/209 (12%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PG +P FPG GPPG +SG L E G G G P G+
Sbjct: 1112 PGAKGQPGLPGFPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHPGQPGP---PGEK 1166
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSWSISELSVDPQGS 312
PG G P +G Q PG P P + + D G P + P+G
Sbjct: 1167 GKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGE 1224
Query: 313 TVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG 372
+Q PP +P P G P P P P LP P+G
Sbjct: 1225 PGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGPQG-------PPGRPGPTGFQGLPGPEG 1276
Query: 373 CSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
PP PG+ G N P LP
Sbjct: 1277 ----PPGLPGNGG--IKGEKGNPGQPGLP 1299
Score = 36.2 bits (82), Expect = 0.058
Identities = 52/194 (26%), Positives = 65/194 (33%), Gaps = 44/194 (22%)
Query: 198 PGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG 257
PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 712 PGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL------P 756
Query: 258 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQI 317
G G P L +G+ FP P GP V P G
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPNG------ 805
Query: 318 PSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPP 377
Q + P P + P G P +P P +P H +P KG PP
Sbjct: 806 ----QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGEKGDPGPP 851
Query: 378 PVD----PGSSAAP 387
+D PG +P
Sbjct: 852 GLDVPGPPGERGSP 865
Score = 32.3 bits (72), Expect = 0.84
Identities = 60/238 (25%), Positives = 75/238 (31%), Gaps = 46/238 (19%)
Query: 205 FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG-----GS 259
FPG +GPPG P + + G G G R P G PG G
Sbjct: 64 FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 260 LGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGPSWSISELSVDPQG 311
G P + G N T GE FP F + + +G P I P+G
Sbjct: 113 DGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKG 171
Query: 312 STVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPL 362
+ P +Q P P P L+ P P GLP P +F +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-- 229
Query: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
L P P PP P F+ + LP R P PP R P
Sbjct: 230 GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG-----PPGIRGP 277
Score = 30.8 bits (68), Expect = 2.5
Identities = 61/209 (29%), Positives = 73/209 (34%), Gaps = 34/209 (16%)
Query: 198 PGPAERP-FPGEKGPPGAAAS--AVSGSWLPIMLESEAGGTDAAGQAGW-RSPGKS---- 249
PG P FPG KG PG + + G + E G A G G +PG+
Sbjct: 532 PGAPGAPGFPGSKGEPGDILTFPGMKGD------KGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 250 -MGDAAAPGGSL--------GNPRL--RPGRGSANQTPGEAFPSPVSFSAAK-LRSDRGG 297
G PGG GNP L PG PG P PV + + + G
Sbjct: 586 LPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQ 645
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFRSFLPR 356
P I DP G T+ Q P P D L P GLP +PG
Sbjct: 646 P--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGDVGLPGDP-GLPGQPGLPGIPGSKGE 700
Query: 357 PHSRPLSSHSLPSPKGCS--PPPPVDPGS 383
P + P PKG P PP PG+
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 30.8 bits (68), Expect = 2.5
Identities = 56/200 (28%), Positives = 66/200 (33%), Gaps = 38/200 (19%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP P F GE+GPPG L G G G+ PG +G+
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG-PVGEK 634
Query: 254 AAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSWSISELS 306
G G+ G P + +G QT PG+ P +P L D G P L
Sbjct: 635 GIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ--PGLP 692
Query: 307 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 366
P IP P P + PP PG R L P P
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGPP----G 743
Query: 367 LPSPKG----CSPPPPVDPG 382
P PKG P PP PG
Sbjct: 744 FPGPKGEPGFALPGPPGPPG 763
Score = 28.9 bits (63), Expect = 9.3
Identities = 53/211 (25%), Positives = 66/211 (31%), Gaps = 15/211 (7%)
Query: 200 PAERPFPGEKGPPG----AAASAVSGSWLPIMLESEAGGTDAAGQAGWRS-PGKS--MGD 252
P FPG +GPPG GS + L G G G + PG + G
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGP 193
Query: 253 AAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 310
PG G +G P PG G F P + GP ISE P
Sbjct: 194 IGPPGPPGLMGPPG-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE-QKRPI 251
Query: 311 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 370
++ L PP P + PP P G + + P R +
Sbjct: 252 DVEFQKGDQGLPGDRGPP--GPPGIRGPPG--PPGGEKGEKGEQGEPGKRGKPGKDGENG 307
Query: 371 KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
+ P P DPG P K Q T P
Sbjct: 308 QPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 49.7 bits (117), Expect = 5e-06
Identities = 58/224 (25%), Positives = 85/224 (37%), Gaps = 31/224 (13%)
Query: 212 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGS 271
P +A+S +SG P+ S G ++ + RSP + +PG +L P + G G
Sbjct: 774 PCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGK 832
Query: 272 ANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDA 331
A + P + P P++ S P++ S S PQ + R PT
Sbjct: 833 APELPSGSGPEPLAPSPV-------SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTL 885
Query: 332 PSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAA 386
P L +P G PR P P S P P SP PP + A
Sbjct: 886 PGLRHAPWQG-PR-----------GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAF 933
Query: 387 PTSGSFKNQ--AYPTLPNRR---WPSSR-SLWTPPNRRSPSSGV 424
P + S+ + P LP +R P + W P SP+ G+
Sbjct: 934 PLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGI 977
Score = 46.6 bits (109), Expect = 4e-05
Identities = 83/337 (24%), Positives = 117/337 (34%), Gaps = 51/337 (15%)
Query: 93 PRPFQARLLAAVPSASNSKT---PCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGT 149
P P +L +P+ P SA P L+ A S W GP+ G +
Sbjct: 713 PYPQSRKLSYEIPTEEGGDRYPLPGHLASAGP-LASAESLEPVSWREGPS-------GHS 764
Query: 150 VLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEK 209
LP R+PRD LS ST + + K T +P P +R PGE
Sbjct: 765 TLP---RSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEA 821
Query: 210 GPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR-PG 268
PP + A LP S +G A SP + P P+ R PG
Sbjct: 822 LPPVSQAGTGKAPELP----SGSGPEPLA-----PSP---VSPTFPPSSPSDWPQERSPG 869
Query: 269 RGSANQTPGEAFPSPV-SFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVP 327
S +P P+ + A + RG P P GS + +PS +
Sbjct: 870 GHSDGASPRSPVPTTLPGLRHAPWQGPRGPPD--------SPDGSPLTPVPSQM------ 915
Query: 328 PTDAPSLLAS--PPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSA 385
P L+AS PP P P S+ S+P P P P P ++
Sbjct: 916 ----PWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQAS 971
Query: 386 APTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
+P G + + L + P + PP + S S+
Sbjct: 972 SPARGISHHVTFAPLLSDNVPQTPE---PPTQESQSN 1005
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 49.7 bits (117), Expect = 5e-06
Identities = 58/224 (25%), Positives = 85/224 (37%), Gaps = 31/224 (13%)
Query: 212 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGS 271
P +A+S +SG P+ S G ++ + RSP + +PG +L P + G G
Sbjct: 898 PCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGK 956
Query: 272 ANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDA 331
A + P + P P++ S P++ S S PQ + R PT
Sbjct: 957 APELPSGSGPEPLAPSPV-------SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTL 1009
Query: 332 PSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAA 386
P L +P G PR P P S P P SP PP + A
Sbjct: 1010 PGLRHAPWQG-PR-----------GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAF 1057
Query: 387 PTSGSFKNQ--AYPTLPNRR---WPSSR-SLWTPPNRRSPSSGV 424
P + S+ + P LP +R P + W P SP+ G+
Sbjct: 1058 PLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGI 1101
Score = 46.6 bits (109), Expect = 4e-05
Identities = 83/337 (24%), Positives = 117/337 (34%), Gaps = 51/337 (15%)
Query: 93 PRPFQARLLAAVPSASNSKT---PCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGT 149
P P +L +P+ P SA P L+ A S W GP+ G +
Sbjct: 837 PYPQSRKLSYEIPTEEGGDRYPLPGHLASAGP-LASAESLEPVSWREGPS-------GHS 888
Query: 150 VLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEK 209
LP R+PRD LS ST + + K T +P P +R PGE
Sbjct: 889 TLP---RSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEA 945
Query: 210 GPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR-PG 268
PP + A LP S +G A SP + P P+ R PG
Sbjct: 946 LPPVSQAGTGKAPELP----SGSGPEPLA-----PSP---VSPTFPPSSPSDWPQERSPG 993
Query: 269 RGSANQTPGEAFPSPV-SFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVP 327
S +P P+ + A + RG P P GS + +PS +
Sbjct: 994 GHSDGASPRSPVPTTLPGLRHAPWQGPRGPPD--------SPDGSPLTPVPSQM------ 1039
Query: 328 PTDAPSLLAS--PPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSA 385
P L+AS PP P P S+ S+P P P P P ++
Sbjct: 1040 ----PWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQAS 1095
Query: 386 APTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
+P G + + L + P + PP + S S+
Sbjct: 1096 SPARGISHHVTFAPLLSDNVPQTPE---PPTQESQSN 1129
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 49.7 bits (117), Expect = 5e-06
Identities = 58/224 (25%), Positives = 85/224 (37%), Gaps = 31/224 (13%)
Query: 212 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGS 271
P +A+S +SG P+ S G ++ + RSP + +PG +L P + G G
Sbjct: 908 PCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEAL-PPVSQAGTGK 966
Query: 272 ANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDA 331
A + P + P P++ S P++ S S PQ + R PT
Sbjct: 967 APELPSGSGPEPLAPSPV-------SPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTL 1019
Query: 332 PSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG-----CSPPPPVDPGSSAA 386
P L +P G PR P P S P P SP PP + A
Sbjct: 1020 PGLRHAPWQG-PR-----------GPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAF 1067
Query: 387 PTSGSFKNQ--AYPTLPNRR---WPSSR-SLWTPPNRRSPSSGV 424
P + S+ + P LP +R P + W P SP+ G+
Sbjct: 1068 PLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGI 1111
Score = 46.6 bits (109), Expect = 4e-05
Identities = 83/337 (24%), Positives = 117/337 (34%), Gaps = 51/337 (15%)
Query: 93 PRPFQARLLAAVPSASNSKT---PCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGT 149
P P +L +P+ P SA P L+ A S W GP+ G +
Sbjct: 847 PYPQSRKLSYEIPTEEGGDRYPLPGHLASAGP-LASAESLEPVSWREGPS-------GHS 898
Query: 150 VLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEK 209
LP R+PRD LS ST + + K T +P P +R PGE
Sbjct: 899 TLP---RSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEA 955
Query: 210 GPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR-PG 268
PP + A LP S +G A SP + P P+ R PG
Sbjct: 956 LPPVSQAGTGKAPELP----SGSGPEPLA-----PSP---VSPTFPPSSPSDWPQERSPG 1003
Query: 269 RGSANQTPGEAFPSPV-SFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVP 327
S +P P+ + A + RG P P GS + +PS +
Sbjct: 1004 GHSDGASPRSPVPTTLPGLRHAPWQGPRGPPD--------SPDGSPLTPVPSQM------ 1049
Query: 328 PTDAPSLLAS--PPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSA 385
P L+AS PP P P S+ S+P P P P P ++
Sbjct: 1050 ----PWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQAS 1105
Query: 386 APTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
+P G + + L + P + PP + S S+
Sbjct: 1106 SPARGISHHVTFAPLLSDNVPQTPE---PPTQESQSN 1139
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 49.7 bits (117), Expect = 5e-06
Identities = 65/246 (26%), Positives = 87/246 (35%), Gaps = 48/246 (19%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP P FPG +GPPG S LE G G G R + +
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPA------LEGPKGNPGPQGPPG-RPGFQGLPGP 1271
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW-------SISELS 306
P G GN ++ +G+ Q P L+ D+G P ++ +
Sbjct: 1272 EGPPGLPGNGGIKGEKGNPGQPGLPGLPG--------LKGDQGPPGLQGNPGRPGLNGMK 1323
Query: 307 VDPQGSTVKQIPSSLQSREVP----PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRP 361
DP V P VP P P L+ P P GLP P +S + + + P
Sbjct: 1324 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDAGP 1380
Query: 362 LSSHSLPSPKGCSPP-----------PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPSSR 409
P KG P PP DPG + P G+ + P LP + P +R
Sbjct: 1381 PGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PGTR 1438
Query: 410 SLWTPP 415
L PP
Sbjct: 1439 GLDGPP 1444
Score = 38.9 bits (89), Expect = 0.009
Identities = 59/242 (24%), Positives = 74/242 (30%), Gaps = 59/242 (24%)
Query: 196 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 255
P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 225 PKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP 280
Query: 256 PGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGGPS 299
PGG G R +PG+ N PG +P K + D G P
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 300 WSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GLPR 344
+ G T+ + +P R P P L PP G P
Sbjct: 341 PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPG 400
Query: 345 -PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPVDP 381
PG R + LP P P H PS + C P PP P
Sbjct: 401 FPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPGPP 459
Query: 382 GS 383
GS
Sbjct: 460 GS 461
Score = 36.2 bits (82), Expect = 0.058
Identities = 52/194 (26%), Positives = 65/194 (33%), Gaps = 44/194 (22%)
Query: 198 PGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG 257
PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 712 PGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL------P 756
Query: 258 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQI 317
G G P L +G+ FP P GP V P G
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPNG------ 805
Query: 318 PSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPP 377
Q + P P + P G P +P P +P H +P KG PP
Sbjct: 806 ----QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGEKGDPGPP 851
Query: 378 PVD----PGSSAAP 387
+D PG +P
Sbjct: 852 GLDVPGPPGERGSP 865
Score = 35.8 bits (81), Expect = 0.076
Identities = 58/209 (27%), Positives = 70/209 (33%), Gaps = 29/209 (13%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PG +P FPG GPPG +SG L E G G G P G+
Sbjct: 1112 PGAKGQPGLPGFPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHPGQPGP---PGEK 1166
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSWSISELSVDPQGS 312
PG G P +G Q PG P P + + D G P + P+G
Sbjct: 1167 GKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGE 1224
Query: 313 TVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG 372
+Q PP +P P G P P P RP LP P+G
Sbjct: 1225 PGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGP---------QGPPGRP-GFQGLPGPEG 1273
Query: 373 CSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
PP PG+ G N P LP
Sbjct: 1274 ----PPGLPGNGG--IKGEKGNPGQPGLP 1296
Score = 32.3 bits (72), Expect = 0.84
Identities = 60/238 (25%), Positives = 75/238 (31%), Gaps = 46/238 (19%)
Query: 205 FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG-----GS 259
FPG +GPPG P + + G G G R P G PG G
Sbjct: 64 FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 260 LGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGPSWSISELSVDPQG 311
G P + G N T GE FP F + + +G P I P+G
Sbjct: 113 DGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKG 171
Query: 312 STVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPL 362
+ P +Q P P P L+ P P GLP P +F +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-- 229
Query: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
L P P PP P F+ + LP R P PP R P
Sbjct: 230 GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG-----PPGIRGP 277
Score = 30.8 bits (68), Expect = 2.5
Identities = 61/209 (29%), Positives = 73/209 (34%), Gaps = 34/209 (16%)
Query: 198 PGPAERP-FPGEKGPPGAAAS--AVSGSWLPIMLESEAGGTDAAGQAGW-RSPGKS---- 249
PG P FPG KG PG + + G + E G A G G +PG+
Sbjct: 532 PGAPGAPGFPGSKGEPGDILTFPGMKGD------KGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 250 -MGDAAAPGGSL--------GNPRL--RPGRGSANQTPGEAFPSPVSFSAAK-LRSDRGG 297
G PGG GNP L PG PG P PV + + + G
Sbjct: 586 LPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQ 645
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFRSFLPR 356
P I DP G T+ Q P P D L P GLP +PG
Sbjct: 646 P--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGDVGLPGDP-GLPGQPGLPGIPGSKGE 700
Query: 357 PHSRPLSSHSLPSPKGCS--PPPPVDPGS 383
P + P PKG P PP PG+
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 30.8 bits (68), Expect = 2.5
Identities = 56/200 (28%), Positives = 66/200 (33%), Gaps = 38/200 (19%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP P F GE+GPPG L G G G+ PG +G+
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG-PVGEK 634
Query: 254 AAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSWSISELS 306
G G+ G P + +G QT PG+ P +P L D G P L
Sbjct: 635 GIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ--PGLP 692
Query: 307 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 366
P IP P P + PP PG R L P P
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGPP----G 743
Query: 367 LPSPKG----CSPPPPVDPG 382
P PKG P PP PG
Sbjct: 744 FPGPKGEPGFALPGPPGPPG 763
Score = 28.9 bits (63), Expect = 9.3
Identities = 53/211 (25%), Positives = 66/211 (31%), Gaps = 15/211 (7%)
Query: 200 PAERPFPGEKGPPG----AAASAVSGSWLPIMLESEAGGTDAAGQAGWRS-PGKS--MGD 252
P FPG +GPPG GS + L G G G + PG + G
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGP 193
Query: 253 AAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 310
PG G +G P PG G F P + GP ISE P
Sbjct: 194 IGPPGPPGLMGPPG-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE-QKRPI 251
Query: 311 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 370
++ L PP P + PP P G + + P R +
Sbjct: 252 DVEFQKGDQGLPGDRGPP--GPPGIRGPPG--PPGGEKGEKGEQGEPGKRGKPGKDGENG 307
Query: 371 KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
+ P P DPG P K Q T P
Sbjct: 308 QPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 49.7 bits (117), Expect = 5e-06
Identities = 62/236 (26%), Positives = 88/236 (37%), Gaps = 35/236 (14%)
Query: 194 IAPRPGPAERPF--PGEKGPPGAAASAV------SGSWLPIMLESEAGGTDAAGQAGW-- 243
+A +PG + P PG PP +GS P SE G A Q
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP---SSEQPGPKALAQPPGVG 398
Query: 244 RSPGKSMGDAAAPGGSLGNPR---LRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
++P + G A P +G P+ +PG S + PG K+ + + GP
Sbjct: 399 KTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG- 457
Query: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
+ S G T + PS L PP P PP +PG+ P +
Sbjct: 458 ---KTSAQQTGPT--KPPSQLPGPAKPPPQQPGPAKPPPQ---QPGSA------KPPSQQ 503
Query: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTS--GSFKNQAYPTLPNRRWPSSRSLWTP 414
P S+ P G + P P PGS+ P+ GS K A P + PS++ P
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK--PSAQQSTKP 557
Score = 46.2 bits (108), Expect = 6e-05
Identities = 80/327 (24%), Positives = 116/327 (35%), Gaps = 41/327 (12%)
Query: 112 TPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSR 171
TP + S P K+ + +GPT T A+ P RD R ++
Sbjct: 235 TPKSISSQQPEKIKSQPPGTGKPIQGPTQ--------TPQTDHAKLPLQ--RDASRPQTK 284
Query: 172 NSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPG-EKGPPGAAASAVSGSWLPIMLES 230
+ R PS S + P PG PG EK PG A S L L
Sbjct: 285 QADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ 344
Query: 231 EAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFS--- 287
+ G + P + G P LG P P + + ++ P P P + +
Sbjct: 345 QPGTV--------KPPVQPPGTTKPPAQPLG-PAKPPAQQTGSEKPSSEQPGPKALAQPP 395
Query: 288 -AAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVP-PTDAPSLLASP---PSGL 342
K + + GP+ ++ P+ + Q P + P PT P P P+
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPK--PLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
Query: 343 PRPGTRWFRSFLPRPHSRPLSSHSLPSPK--GCSPPPPVDPGSSAAPTS--GSFK---NQ 395
PG + P L + P P+ G + PPP PGS+ P+ GS K Q
Sbjct: 454 AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQ 513
Query: 396 AYPTLPNRRWPSSRSLWTPPNRRSPSS 422
P P+ + P S T P + P S
Sbjct: 514 PGPAKPSPQQPGS----TKPPSQQPGS 536
Score = 38.5 bits (88), Expect = 0.012
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 18/162 (11%)
Query: 195 APRPGPAERP--------FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSP 246
A PGP + P P ++ PG ++ +G P + P
Sbjct: 431 AKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 247 GKSMGDAAAPG---GSLGNPRLRPGRGSAN-QTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
+ G A P GS P +PG + Q PG P +AK + + P+
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR 344
++ S P T P PPT +PS P GLP+
Sbjct: 551 AQQSTKPVSQTGSGKPLQ------PPTVSPSAKQPPSQGLPK 586
Score = 32.7 bits (73), Expect = 0.65
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPP-SGLPRPGTRWFRS---- 352
P S+ L + Q ST +E P + PS SP S LP +FRS
Sbjct: 2343 PPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLPS--GSPSVSSLPAKPRPFFRSSSLD 2400
Query: 353 FLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPT 388
+P P P P PPPP+ P +S PT
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPT 2436
Score = 29.6 bits (65), Expect = 5.5
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 327 PPTDAPSLLASPPSGLPRP----------GTRWFRSFLPRPHSRPLSSHSLPSPKGC-SP 375
PP P + P+ LP+ T F + + L S+ LP + C +
Sbjct: 2423 PPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTA 2482
Query: 376 PPPVDPGSSAAPTSGSFKNQAYPTLP 401
PPPV P S+ P+ F ++ P+ P
Sbjct: 2483 PPPVPPKPSSIPSGLVFTHRPEPSKP 2508
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 49.7 bits (117), Expect = 5e-06
Identities = 62/236 (26%), Positives = 88/236 (37%), Gaps = 35/236 (14%)
Query: 194 IAPRPGPAERPF--PGEKGPPGAAASAV------SGSWLPIMLESEAGGTDAAGQAGW-- 243
+A +PG + P PG PP +GS P SE G A Q
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP---SSEQPGPKALAQPPGVG 398
Query: 244 RSPGKSMGDAAAPGGSLGNPR---LRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW 300
++P + G A P +G P+ +PG S + PG K+ + + GP
Sbjct: 399 KTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG- 457
Query: 301 SISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSR 360
+ S G T + PS L PP P PP +PG+ P +
Sbjct: 458 ---KTSAQQTGPT--KPPSQLPGPAKPPPQQPGPAKPPPQ---QPGSA------KPPSQQ 503
Query: 361 PLSSHSLPSPKGCSPPPPVDPGSSAAPTS--GSFKNQAYPTLPNRRWPSSRSLWTP 414
P S+ P G + P P PGS+ P+ GS K A P + PS++ P
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK--PSAQQSTKP 557
Score = 46.2 bits (108), Expect = 6e-05
Identities = 80/327 (24%), Positives = 116/327 (35%), Gaps = 41/327 (12%)
Query: 112 TPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSR 171
TP + S P K+ + +GPT T A+ P RD R ++
Sbjct: 235 TPKSISSQQPEKIKSQPPGTGKPIQGPTQ--------TPQTDHAKLPLQ--RDASRPQTK 284
Query: 172 NSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPG-EKGPPGAAASAVSGSWLPIMLES 230
+ R PS S + P PG PG EK PG A S L L
Sbjct: 285 QADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ 344
Query: 231 EAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFS--- 287
+ G + P + G P LG P P + + ++ P P P + +
Sbjct: 345 QPGTV--------KPPVQPPGTTKPPAQPLG-PAKPPAQQTGSEKPSSEQPGPKALAQPP 395
Query: 288 -AAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVP-PTDAPSLLASP---PSGL 342
K + + GP+ ++ P+ + Q P + P PT P P P+
Sbjct: 396 GVGKTPAQQPGPAKPPTQQVGTPK--PLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
Query: 343 PRPGTRWFRSFLPRPHSRPLSSHSLPSPK--GCSPPPPVDPGSSAAPTS--GSFK---NQ 395
PG + P L + P P+ G + PPP PGS+ P+ GS K Q
Sbjct: 454 AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQ 513
Query: 396 AYPTLPNRRWPSSRSLWTPPNRRSPSS 422
P P+ + P S T P + P S
Sbjct: 514 PGPAKPSPQQPGS----TKPPSQQPGS 536
Score = 38.5 bits (88), Expect = 0.012
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 18/162 (11%)
Query: 195 APRPGPAERP--------FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSP 246
A PGP + P P ++ PG ++ +G P + P
Sbjct: 431 AKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 247 GKSMGDAAAPG---GSLGNPRLRPGRGSAN-QTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
+ G A P GS P +PG + Q PG P +AK + + P+
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR 344
++ S P T P PPT +PS P GLP+
Sbjct: 551 AQQSTKPVSQTGSGKPLQ------PPTVSPSAKQPPSQGLPK 586
Score = 32.7 bits (73), Expect = 0.65
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPP-SGLPRPGTRWFRS---- 352
P S+ L + Q ST +E P + PS SP S LP +FRS
Sbjct: 2343 PPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLPS--GSPSVSSLPAKPRPFFRSSSLD 2400
Query: 353 FLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPT 388
+P P P P PPPP+ P +S PT
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPT 2436
Score = 29.6 bits (65), Expect = 5.5
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 327 PPTDAPSLLASPPSGLPRP----------GTRWFRSFLPRPHSRPLSSHSLPSPKGC-SP 375
PP P + P+ LP+ T F + + L S+ LP + C +
Sbjct: 2423 PPPPLPPPTSPKPTILPKKKLTVASPVTTATPLFDAVTTLETTAVLRSNGLPVTRICTTA 2482
Query: 376 PPPVDPGSSAAPTSGSFKNQAYPTLP 401
PPPV P S+ P+ F ++ P+ P
Sbjct: 2483 PPPVPPKPSSIPSGLVFTHRPEPSKP 2508
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 49.3 bits (116), Expect = 7e-06
Identities = 98/381 (25%), Positives = 132/381 (34%), Gaps = 61/381 (16%)
Query: 70 PRPGVARAAACCACACAGRTNRQPRPFQA----RLLAAVPSASNSKTPCTCMSASPRLSK 125
P+ G A A A A + T+ P+ +A + + A PS + TP SP+
Sbjct: 896 PKEGPATPAPKQAPALS-MTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGP 954
Query: 126 ASSSSSRCWSRGPTS-------GLGATLG--GTVLPPAARTPRDGLRDRGRLLSRNSTAR 176
A+ S W+ P + G AT G PPAA P + A
Sbjct: 955 ATPSPK--WAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSP----------KGGPAT 1002
Query: 177 RSFLELPSKCLTSWLWVIAPRPGPAERPFP-GEKGPPGAAASAVSGSWLPIMLESEAGGT 235
S P+ + +P+ PA PFP G PP A + GS L A T
Sbjct: 1003 PSPKGAPTPPAVT---PPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 236 DAA-------GQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSA 288
AA G A G AA P G P P A P PSP A
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGP-ATPSPKGAPMPPAATPPSPKGGLA 1118
Query: 289 AKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQS--REVPPTDAPSLLASPPSGLPRPG 346
+G P+ + + P+G P + PP+ L PP G P
Sbjct: 1119 TP--PHKGAPT-TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTP 1175
Query: 347 TRWFRSFLPRPHSRPLSSHSLPSPKGC----SPPPPVDPGSSAAPTSGSFKNQAYPTLPN 402
P S P + PSPKG + PP G A P+ + PT P
Sbjct: 1176 A-------ATPPS-PKGGLATPSPKGAPTTPAATPPSPKGGLATPSP-----KGAPTTPA 1222
Query: 403 RRWPSSR-SLWTPPNRRSPSS 422
PS + L TP + +P++
Sbjct: 1223 ATPPSPKGGLATPSPKGAPTT 1243
Score = 47.4 bits (111), Expect = 3e-05
Identities = 83/347 (23%), Positives = 113/347 (32%), Gaps = 52/347 (14%)
Query: 103 AVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAAR--TPRD 160
A PS + TP SP+ A+ S G +PPAA +P+
Sbjct: 1072 ATPSLKGAPTPPAATPPSPKGGPATPSPK----------------GAPMPPAATPPSPKG 1115
Query: 161 GLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFP--GEKGPPGAAASA 218
GL + + A P L + AP A P P G PP A
Sbjct: 1116 GLATPPHKGAPTTPAATP--PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPT 1173
Query: 219 VSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTP-- 276
+ P S GG G +P +P G L P + + TP
Sbjct: 1174 TPAATPP----SPKGGLATPSPKG--APTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1227
Query: 277 ---GEAFPSPV---SFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSRE----- 325
G A PSP + AA S +GGP+ + + P +T + L +
Sbjct: 1228 PKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP 1287
Query: 326 -----VPPTDAPSLLASPPSGLPRPGTRWFRS-----FLPRPHSRPLS-SHSLPSPKGCS 374
PP+ SPP G P P S P P P + + PSPKG
Sbjct: 1288 NPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTP 1347
Query: 375 PPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPS 421
P P S PT+ S K P ++ P +R P+
Sbjct: 1348 TLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPA 1394
Score = 47.0 bits (110), Expect = 3e-05
Identities = 81/337 (24%), Positives = 108/337 (32%), Gaps = 81/337 (24%)
Query: 102 AAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLP-------PA 154
AA P + TP SP+ S A++ + P + L + GG P P
Sbjct: 1024 AATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPP 1083
Query: 155 ARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGA 214
A TP PS P+ GPA G PP A
Sbjct: 1084 AATP------------------------PS-----------PKGGPATPSPKGAPMPPAA 1108
Query: 215 AASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQ 274
S GG G +P +P G L P P +G A
Sbjct: 1109 TP------------PSPKGGLATPPHKG--APTTPAATPPSPKGGLATP---PPKG-APT 1150
Query: 275 TPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSL 334
TP PSP A +G P+ + + P+G P PT +
Sbjct: 1151 TPAATPPSPKGGLATP--PPKGAPT-TPAATPPSPKGGLATPSPKG------APTTPAAT 1201
Query: 335 LASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDP-----GSSAAPTS 389
SP GL P + + P + PSPKG P P G + P
Sbjct: 1202 PPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPK 1261
Query: 390 GSFKNQAYPTLPNRRWPSSR-SLWTPPNRRSPSSGVV 425
G+ PT P PS + L TPP++ +P+ VV
Sbjct: 1262 GA------PTPPAATPPSLKGGLATPPHKGAPNPAVV 1292
Score = 44.7 bits (104), Expect = 2e-04
Identities = 62/237 (26%), Positives = 80/237 (33%), Gaps = 44/237 (18%)
Query: 196 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAA-GQAGWRSP-GKSMGDA 253
P P PFP E GP A + +A T A G SP G A
Sbjct: 886 PTPSVVNLPFPKE-GPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPA 944
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGST 313
A P G P P A P PSP +GGP+ + P+G+
Sbjct: 945 ATPPSPKGGPAT-PSPKWAPTPPAATPPSP-----------KGGPA------TPSPKGAP 986
Query: 314 VKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGC 373
+ + P T +P +PP+ P P P P ++ P PKG
Sbjct: 987 TPPAATPPSPKGGPATPSPKGAPTPPAVTP-----------PSPKGSPAAT---PFPKGA 1032
Query: 374 SPPPPVDPGS-----SAAPTSGSFKNQAYPTLPNRR----WPSSRSLWTPPNRRSPS 421
S PP P S +A P TLP+ + PS + TPP PS
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPS 1089
Score = 44.3 bits (103), Expect = 2e-04
Identities = 55/227 (24%), Positives = 77/227 (33%), Gaps = 40/227 (17%)
Query: 195 APRPGPAERPFPGEKGPPGAAASAVSGSWLP-----------IMLESEAGGTDAAGQAGW 243
+P+ GPA P G PP A ++ G + S GG + G
Sbjct: 1250 SPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGA 1309
Query: 244 RSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSA--AKLRSDRGGPSWS 301
+P AA P G+P P +G A P PSP A S +GGP+
Sbjct: 1310 PTP-----PAATPPSPKGSPGTPPPKG-APTPPAVTPPSPKGTPTLPATTPSSKGGPT-- 1361
Query: 302 ISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP 361
PSS + PP PS P P P +P P P
Sbjct: 1362 ---------------TPSSKEG-PTPPAATPSHKGGPAMTPPSPKRG---PAIPSPKGDP 1402
Query: 362 LSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSS 408
S +P +P PV +A P+ G A + ++ P++
Sbjct: 1403 TSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPAT 1449
Score = 41.2 bits (95), Expect = 0.002
Identities = 64/264 (24%), Positives = 95/264 (35%), Gaps = 44/264 (16%)
Query: 195 APRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKS--MGD 252
AP+ GPA P KG P A P E A A + ++P MG
Sbjct: 1451 APKGGPAT---PSSKGDPTLPAVTP-----PSPKEPPAPKQVATSSSPKKAPATPAPMGA 1502
Query: 253 AAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGG---PSWSISELSVDP 309
P +P+ P S+ + P + +S + + P+ ++ P
Sbjct: 1503 PTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTP 1562
Query: 310 QGSTVKQIPSSLQSREV--PPTDAPSLLASPPSG----LPRPGTRWFRSFLPRPHS---- 359
T K+ P++ S+E PP PS PS +P T P P +
Sbjct: 1563 AIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPP 1622
Query: 360 RPLSSHSLPSPKGCSPPPPVDPGS-SAAPTS--------GSFKNQAYPTLPNRRWPS--- 407
P + P+PKG PPV P S +PTS G+ QA LP ++ P+
Sbjct: 1623 SPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALK 1682
Query: 408 ---------SRSLWTPPNRRSPSS 422
S + T P R+ P +
Sbjct: 1683 EVLVAPAPESTPIITAPTRKGPQT 1706
Score = 30.0 bits (66), Expect = 4.2
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 22/184 (11%)
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISE------LSV 307
+ P SL PG + + +PV+ S + ++ G S + S L+
Sbjct: 733 SVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLAD 792
Query: 308 DPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSG-LPRPGTRWFRSFLPR-------PHS 359
P V P + + PPT S P G L P + SFLP
Sbjct: 793 SPSPLGVSVSPQTKR----PPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKD 848
Query: 360 RPLSSHSL--PSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNR 417
P ++HS PSPKG P V P S T K P++ N +P TP +
Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPP-KETPTPSVVNLPFPKEGPA-TPAPK 906
Query: 418 RSPS 421
++P+
Sbjct: 907 QAPA 910
Score = 29.3 bits (64), Expect = 7.1
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 283 PVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGL 342
P+S +A L S P+ + S P + V P S+Q P P+LL SPPS
Sbjct: 110 PISPAALALASPMIAPTLKGTPSSSAPL-ALVALAPHSVQKSSAFP---PNLLTSPPSVA 165
Query: 343 PRPGTRWFRSFLPRPHSRP------LSSHSLPSPKGCSPPP 377
P S P + S +P+PKG PP
Sbjct: 166 VAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPP 206
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 48.9 bits (115), Expect = 9e-06
Identities = 66/246 (26%), Positives = 87/246 (35%), Gaps = 51/246 (20%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP P FPG +GPPG S LE G G G PG +
Sbjct: 1219 PGPKGEPGFHGFPGVQGPPGPPGSPGPA------LEGPKGNPGPQGPPG--RPG--LPGP 1268
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW-------SISELS 306
P G GN ++ +G+ Q P L+ D+G P ++ +
Sbjct: 1269 EGPPGLPGNGGIKGEKGNPGQPGLPGLPG--------LKGDQGPPGLQGNPGRPGLNGMK 1320
Query: 307 VDPQGSTVKQIPSSLQSREVP----PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRP 361
DP V P VP P P L+ P P GLP P +S + + + P
Sbjct: 1321 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSG---QSIIIKGDAGP 1377
Query: 362 LSSHSLPSPKGCSPP-----------PPVDPGSSAAP-TSGSFKNQAYPTLPNRRWPSSR 409
P KG P PP DPG + P G+ + P LP + P +R
Sbjct: 1378 PGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ--PGTR 1435
Query: 410 SLWTPP 415
L PP
Sbjct: 1436 GLDGPP 1441
Score = 38.9 bits (89), Expect = 0.009
Identities = 59/242 (24%), Positives = 74/242 (30%), Gaps = 59/242 (24%)
Query: 196 PRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 255
P+ E+ G GPPG +S PI +E + G G G P G
Sbjct: 225 PKGEKGEQGLQGPPGPPGQ----ISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP 280
Query: 256 PGGSLGNP--------RLRPGRGSANQTPG-------EAFPSPVSFSAAK-LRSDRGGPS 299
PGG G R +PG+ N PG +P K + D G P
Sbjct: 281 PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 300 WSISELSVDPQGSTVKQ--------IPSSLQSREVPPTDAPSLLASPPS-------GLPR 344
+ G T+ + +P R P P L PP G P
Sbjct: 341 PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPG 400
Query: 345 -PGTRWFRSF----------------------LPRPHSRPLSSHSLPSPKGCSPPPPVDP 381
PG R + LP P P H PS + C P PP P
Sbjct: 401 FPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPG-PAGPHIPPSDEICEPGPPGPP 459
Query: 382 GS 383
GS
Sbjct: 460 GS 461
Score = 36.2 bits (82), Expect = 0.058
Identities = 52/194 (26%), Positives = 65/194 (33%), Gaps = 44/194 (22%)
Query: 198 PGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG 257
PGP + FPG GPPGA G+ I LE G G G PG ++
Sbjct: 712 PGP--KGFPGIPGPPGA-----PGTPGRIGLEGPPGPPGFPGPKG--EPGFAL------P 756
Query: 258 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQI 317
G G P L +G+ FP P GP V P G
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKG-----DVGPNG------ 805
Query: 318 PSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPP 377
Q + P P + P G P +P P +P H +P KG PP
Sbjct: 806 ----QPGPMGPPGLPGIGVQGPPGPPG---------IPGPIGQP-GLHGIPGEKGDPGPP 851
Query: 378 PVD----PGSSAAP 387
+D PG +P
Sbjct: 852 GLDVPGPPGERGSP 865
Score = 35.4 bits (80), Expect = 0.100
Identities = 58/209 (27%), Positives = 70/209 (33%), Gaps = 32/209 (15%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PG +P FPG GPPG +SG L E G G G P G+
Sbjct: 1112 PGAKGQPGLPGFPGTPGPPG--PKGISGPPGNPGLPGEPGPVGGGGHPGQPGP---PGEK 1166
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSF-SAAKLRSDRGGPSWSISELSVDPQGS 312
PG G P +G Q PG P P + + D G P + P+G
Sbjct: 1167 GKPGQD-GIPGPAGQKGEPGQ-PGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGE 1224
Query: 313 TVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKG 372
+Q PP +P P G P P P RP LP P+G
Sbjct: 1225 PGFHGFPGVQGPPGPP-GSPGPALEGPKGNPGP---------QGPPGRP----GLPGPEG 1270
Query: 373 CSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
PP PG+ G N P LP
Sbjct: 1271 ----PPGLPGNGG--IKGEKGNPGQPGLP 1293
Score = 32.3 bits (72), Expect = 0.84
Identities = 60/238 (25%), Positives = 75/238 (31%), Gaps = 46/238 (19%)
Query: 205 FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG-----GS 259
FPG +GPPG P + + G G G R P G PG G
Sbjct: 64 FPGPEGPPG-----------PRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGH 112
Query: 260 LGNPRLRPGRGSANQTPGE-AFPSPVSFSAAK-------LRSDRGGPSWSISELSVDPQG 311
G P + G N T GE FP F + + +G P I P+G
Sbjct: 113 DGAPGPQ-GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKG 171
Query: 312 STVKQIPSSLQSREVP--------PTDAPSLLASP-PSGLPRPGTRWFRSFLPRPHSRPL 362
+ P +Q P P P L+ P P GLP P +F +
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEK-- 229
Query: 363 SSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
L P P PP P F+ + LP R P PP R P
Sbjct: 230 GEQGLQGP----PGPPGQISEQKRPIDVEFQ-KGDQGLPGDRGPPG-----PPGIRGP 277
Score = 30.8 bits (68), Expect = 2.5
Identities = 61/209 (29%), Positives = 73/209 (34%), Gaps = 34/209 (16%)
Query: 198 PGPAERP-FPGEKGPPGAAAS--AVSGSWLPIMLESEAGGTDAAGQAGW-RSPGKS---- 249
PG P FPG KG PG + + G + E G A G G +PG+
Sbjct: 532 PGAPGAPGFPGSKGEPGDILTFPGMKGD------KGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 250 -MGDAAAPGGSL--------GNPRL--RPGRGSANQTPGEAFPSPVSFSAAK-LRSDRGG 297
G PGG GNP L PG PG P PV + + + G
Sbjct: 586 LPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQ 645
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFRSFLPR 356
P I DP G T+ Q P P D L P GLP +PG
Sbjct: 646 P--GIPGPKGDP-GQTITQ-PGKPGLPGNPGRDGDVGLPGDP-GLPGQPGLPGIPGSKGE 700
Query: 357 PHSRPLSSHSLPSPKGCS--PPPPVDPGS 383
P + P PKG P PP PG+
Sbjct: 701 PGIPGIGLPGPPGPKGFPGIPGPPGAPGT 729
Score = 30.8 bits (68), Expect = 2.5
Identities = 56/200 (28%), Positives = 66/200 (33%), Gaps = 38/200 (19%)
Query: 198 PGPAERP----FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP P F GE+GPPG L G G G+ PG +G+
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPG-----------LPGLPGNIGPMGPPGFGPPG-PVGEK 634
Query: 254 AAPG--GSLGNPRLRPGRGSANQT---PGE-AFP-SPVSFSAAKLRSDRGGPSWSISELS 306
G G+ G P + +G QT PG+ P +P L D G P L
Sbjct: 635 GIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ--PGLP 692
Query: 307 VDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHS 366
P IP P P + PP PG R L P P
Sbjct: 693 GIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG----RIGLEGPPGPP----G 743
Query: 367 LPSPKG----CSPPPPVDPG 382
P PKG P PP PG
Sbjct: 744 FPGPKGEPGFALPGPPGPPG 763
Score = 28.9 bits (63), Expect = 9.3
Identities = 53/211 (25%), Positives = 66/211 (31%), Gaps = 15/211 (7%)
Query: 200 PAERPFPGEKGPPG----AAASAVSGSWLPIMLESEAGGTDAAGQAGWRS-PGKS--MGD 252
P FPG +GPPG GS + L G G G + PG + G
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGP 193
Query: 253 AAAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQ 310
PG G +G P PG G F P + GP ISE P
Sbjct: 194 IGPPGPPGLMGPPG-PPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISE-QKRPI 251
Query: 311 GSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSP 370
++ L PP P + PP P G + + P R +
Sbjct: 252 DVEFQKGDQGLPGDRGPP--GPPGIRGPPG--PPGGEKGEKGEQGEPGKRGKPGKDGENG 307
Query: 371 KGCSPPPPVDPGSSAAPTSGSFKNQAYPTLP 401
+ P P DPG P K Q T P
Sbjct: 308 QPGIPGLPGDPGYPGEPGRDGEKGQKGDTGP 338
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.9 bits (115), Expect = 9e-06
Identities = 84/372 (22%), Positives = 126/372 (33%), Gaps = 49/372 (13%)
Query: 75 ARAAACCACACAGRTNRQPRPFQARL------LAAVPSASNSKTPCTCMSASPRLSKASS 128
+R AA A A P A L L+A S +P A R ++
Sbjct: 2355 SRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAP 2414
Query: 129 SSSRCWSR---GPTSGLGATLGGTVLPPAARTPRD----GLRDRGRLLSRNSTARRSFLE 181
S SR S P+S +G ++LPPA PR D+ R L +T
Sbjct: 2415 SQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQS 2474
Query: 182 LPSKCLTSWLWVIAPRPGPAERPFPG----EKGPPGAAASAVSGSWLPIMLESEAGGTDA 237
L S + + G P PG + G P A+ A S L + ++ + +
Sbjct: 2475 LSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSS 2534
Query: 238 AGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGG 297
+ + S S +++ S S++ + G + P + ++ S
Sbjct: 2535 SSSSSSSSSSSSSSSSSSSSSS---------GSSSSDSEGSSLPVQPEVALKRVPSPTPA 2585
Query: 298 PSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRP 357
P ++ E G + P+ + R + + S +S S S
Sbjct: 2586 PKEAVRE------GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS---------SSSSSSS 2630
Query: 358 HSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFK-------NQAYPTLPNRRWPSSRS 410
S SS S S S P P PG A P S K P P SRS
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRS 2690
Query: 411 L-WTPPNRRSPS 421
L ++P RR PS
Sbjct: 2691 LSYSPVERRRPS 2702
Score = 40.0 bits (92), Expect = 0.004
Identities = 81/362 (22%), Positives = 136/362 (37%), Gaps = 50/362 (13%)
Query: 88 RTNRQPRPFQARLLAAVPSASNSKTPCTCM--------------SASPRLSKASSSSSRC 133
R +QP P + + V +S+S++P S+SPR + SS +
Sbjct: 158 REAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKK 217
Query: 134 WSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWV 193
S T P + R +D R R R + +RR+ + +S
Sbjct: 218 HRSESESKKRKHRSPT--PKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASS---- 271
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
+ +AA+ + L S A G G A + PG +
Sbjct: 272 -----------SDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQR 320
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGST 313
+ S +P ++ + S S + RS G + + L + G +
Sbjct: 321 PS---SPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGS 377
Query: 314 VKQIPSSLQSREV--PPTDA-PSLLASPPSGLPR-PGTRWFRSFLPRPHSRPLSSHSLPS 369
+ + ++ S+E PP++A P+ SPP + P + S P P +S H+ S
Sbjct: 378 PQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSS 437
Query: 370 PKGCSPPPPVDPGS----SAAPTS------GSFKNQAYPTLPNRRWPSSRSLWTPPNRRS 419
P+ SP P PGS S++PTS + +++++ P+RR SRS T RS
Sbjct: 438 PE--SPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRS 495
Query: 420 PS 421
S
Sbjct: 496 RS 497
Score = 35.0 bits (79), Expect = 0.13
Identities = 94/403 (23%), Positives = 143/403 (35%), Gaps = 40/403 (9%)
Query: 5 RGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSAR---PTDSLASRARAWRRRR 61
R TRG R A GR+ +R + +S P RR +R P SR+R RRR
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624
Query: 62 QAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPS---ASNSKTPCTCMS 118
P R+ + +GR+ + + R + P+ S S+TP
Sbjct: 625 SR-----TRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSG 679
Query: 119 ASPRLSKASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRS 178
S + A SR SR P G + L R+ + RGR S +S+ R++
Sbjct: 680 RSRSRTPARRGRSR--SRTPRRGRSRSRS---LVRRGRSHSRTPQRRGR--SGSSSERKN 732
Query: 179 FLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAA 238
+ S + + R P A S +S + S +G +
Sbjct: 733 KSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLS------LRRSLSGSSPCP 786
Query: 239 GQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPV----SFSAAKLRSD 294
Q P +S ++ P P R R S++ P + +P S S+ +
Sbjct: 787 KQKSQTPPRRSRSGSSQPKAKSRTPP-RRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVK 845
Query: 295 RGGP-------SWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPP---SGLPR 344
G P S +E SV PQ + + + + P+ +SPP S P
Sbjct: 846 SGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTP- 904
Query: 345 PGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAP 387
P RS P+P + + S S G S P P S P
Sbjct: 905 PRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTP 947
Score = 32.7 bits (73), Expect = 0.65
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 23 RAAARGS--VPQPVKSS--PPFRRSARPTDSLASRARAWRRRRQAGC-----LRVVPRPG 73
R A RGS P+P S PP RRS+R + L +AR RR R A R PR
Sbjct: 1666 RTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR 1725
Query: 74 VARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSR 132
+ + + A R++R+ R A+ P + S PR + S S SR
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRS------ASSPRTKTTSRRGRSPSPKPRGLQRSRSRSR 1778
Score = 32.3 bits (72), Expect = 0.84
Identities = 43/177 (24%), Positives = 57/177 (32%), Gaps = 16/177 (9%)
Query: 259 SLGNPRLRPGRGSANQTPGEAFP--------SPVSFSAAKLRSDRGGPSWSISELSVDPQ 310
S P P R S P P SP + L + P S
Sbjct: 346 SATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP 405
Query: 311 GSTVKQIPSSLQSREVPPTDAPSLLA-----SPPSGLPRPGTRWFRSFLPRPHSRPLSSH 365
+ +++P S S PP+ P+ ++ SP S P P R P S+ S
Sbjct: 406 PKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHG 465
Query: 366 SLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
K S P G S +P + T R SRS P RRS S+
Sbjct: 466 RAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRS---PQWRRSRSA 519
Score = 31.2 bits (69), Expect = 1.9
Identities = 44/167 (26%), Positives = 61/167 (36%), Gaps = 15/167 (8%)
Query: 258 GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQI 317
GS ++P ++ ++ P S AK R+ S S S VD + +
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPD----SKAKTRTPLRQRSRSGSSPEVDSKSRLSPRR 1595
Query: 318 PSSLQSREVP--PTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSP 375
S S EV P AP + S P P P P + P S S S KG P
Sbjct: 1596 SRSGSSPEVKDKPRAAPRAQSGSDSS-PEPKA-------PAPRALPRRSRSGSSSKGRGP 1647
Query: 376 PPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSS 422
P + ++P A + P ++S TPP RRS S
Sbjct: 1648 SPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSR-TPPRRRSSRS 1693
Score = 31.2 bits (69), Expect = 1.9
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 86 AGRTNRQPRPFQAR-----LLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRGPTS 140
A R R P P A+ ++ S+S+S + + S+S S +SSSSS S +S
Sbjct: 2589 AVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Query: 141 GLGATLGGTVLPPAA---------------RTPRDGLRDRGRLLSRNSTARRSFLELPS 184
A G LP A R P D LRD R LS + RR PS
Sbjct: 2649 PSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRD-SRSLSYSPVERRRPSPQPS 2706
Score = 30.0 bits (66), Expect = 4.2
Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 30/164 (18%)
Query: 264 RLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIP----- 318
RL P R + +P E P + A+ SD S +P+ + +P
Sbjct: 1590 RLSPRRSRSGSSP-EVKDKPRAAPRAQSGSDS----------SPEPKAPAPRALPRRSRS 1638
Query: 319 -SSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPP 377
SS + R P + S +SP P+ + S S P PK S P
Sbjct: 1639 GSSSKGRGPSPEGSSSTESSPEHP-------------PKSRTARRGSRSSPEPKTKSRTP 1685
Query: 378 PVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPS 421
P S ++P + + P +RS P +RRSPS
Sbjct: 1686 PRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPS 1729
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.4 bits (111), Expect = 3e-05
Identities = 65/232 (28%), Positives = 78/232 (33%), Gaps = 42/232 (18%)
Query: 197 RPGPAERPFPGEKGPPGAAASA-VSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAA 255
R P +R GE GPPG A A G+ + E G A G AG P G A
Sbjct: 796 RGAPGDR---GEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA---GPAGP 849
Query: 256 PG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSW----SISELSVDP 309
PG G++G P + RGSA FP S GP + E P
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909
Query: 310 QGST-------------------VKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWF 350
+G T K P + P T P +A + PG R
Sbjct: 910 RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 969
Query: 351 RSF--LPRPHSRPLSSHSLPSPKGCS----PPPPVDPGSSAAPTSGSFKNQA 396
R F LP P P P G S PP P+ P A P S + A
Sbjct: 970 RGFPGLPGPSGEP----GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGA 1017
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/234 (26%), Positives = 79/234 (33%), Gaps = 45/234 (19%)
Query: 194 IAPRPGPAERPFPGEKGPPGA-------AASAVSGSWLPIMLESEAGGTDAAGQAGWRSP 246
+ PR P ER PG GP GA A+ G P G A G+AG + P
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP 360
Query: 247 GKS------MGDAAAPG-----GSLGNPRL--RPGRGSANQTPGEA----FPSPVSFSAA 289
S G+ PG G GNP +PG AN PG A FP S
Sbjct: 361 RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP 420
Query: 290 KLRSDRGGPSWSISEL----SVDPQGSTVKQIPSSLQSREVPPTD----------APSLL 335
+ GP + E S G+ + P +Q P + P+ L
Sbjct: 421 QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480
Query: 336 ASPPSGLPRPGTRWF--RSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAP 387
PP PG+R F + P P P P G P PG + P
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKG-PAGERGSPGPAG----PKGSPGEAGRP 529
Score = 39.3 bits (90), Expect = 0.007
Identities = 61/223 (27%), Positives = 79/223 (35%), Gaps = 31/223 (13%)
Query: 194 IAPRPGPA-ERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGD 252
+A GPA ER PG GP G+ A EAG A G G SPG D
Sbjct: 501 VAGPKGPAGERGSPGPAGPKGSPGEAGR--------PGEAGLPGAKGLTG--SPGSPGPD 550
Query: 253 A----AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS-DRG--GPSWSISEL 305
P G G P G+ Q FP P + ++ +RG GP ++
Sbjct: 551 GKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 610
Query: 306 SVD----PQGSTVKQIPSSLQSREVPPTDAPSLL-----ASPPSGLPRPGTRWFRSFLPR 356
D QG P+ + E P +P A PP +PG + L
Sbjct: 611 GKDGEAGAQGPPGPAGPAG-ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGA 669
Query: 357 P-HSRPLSSHSLPSPKGC-SPPPPVDP-GSSAAPTSGSFKNQA 396
P S P +G PP P P G++ AP + K A
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712
Score = 38.9 bits (89), Expect = 0.009
Identities = 61/217 (28%), Positives = 78/217 (35%), Gaps = 34/217 (15%)
Query: 199 GPAERPF-PGEKGPPG--AAASAVSGSWLPIM-----LESEAGGTDAAGQAGWRSPGKSM 250
G A +P PGE+GPPG A + LP M G AG AG + S
Sbjct: 233 GEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSP 292
Query: 251 GDAAAPG--GSLGNP--RLRPG-------RGSANQTPGEAFPSPVSFSAAKLRSDRGGPS 299
G+ APG G G P R RPG RG+ T P P + G P
Sbjct: 293 GENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP-----GFPG 347
Query: 300 WSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP----RPGTRWFR---S 352
++ PQG + P ++ PP A A+ P+G P +PG +
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAG---AAGPAGNPGADGQPGAKGANGAPG 404
Query: 353 FLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTS 389
P S P G P P + G AP S
Sbjct: 405 IAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGS 441
Score = 35.4 bits (80), Expect = 0.100
Identities = 56/223 (25%), Positives = 66/223 (29%), Gaps = 15/223 (6%)
Query: 196 PRPGPAERPFPGEKGPPG-AAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
P ER PG GPPG A SG E G + G G R G
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPG 1046
Query: 255 APGGSLGNPRLRP-GRGSANQTPGEAFPS-PVSFSAAKLRSDRGGPSWSISELSVD-PQG 311
APG + P G+ G A P+ PV A+ + GP E +G
Sbjct: 1047 APGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG 1106
Query: 312 STVKQIPSSLQSREVPP----------TDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP 361
+ S LQ PP P+ PP PG LP P P
Sbjct: 1107 IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG-LPGPIGPP 1165
Query: 362 LSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRR 404
PP P P P S F P P +
Sbjct: 1166 GPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEK 1208
Score = 31.2 bits (69), Expect = 1.9
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 200 PAERPFPGEKGPPG-AAASAVSGSWLPIML----ESEAGGTDAAGQAGWRSPGKSMGDAA 254
P + PG GPPG + G++ P + E GG G G P G
Sbjct: 135 PGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPG 194
Query: 255 APG--GSLGNPRLRPGRGSANQTPGEAFP 281
APG G G P PG A+ G P
Sbjct: 195 APGPQGFQGPPG-EPGEPGASGPMGPRGP 222
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 47.0 bits (110), Expect = 3e-05
Identities = 89/361 (24%), Positives = 118/361 (32%), Gaps = 72/361 (19%)
Query: 74 VARAAACCACACAGRTNRQPR-------PFQARLLAAVPSASNSKTPCTCMSASPRLSKA 126
+A AAA A A A ++ P P L+ V S P C + A
Sbjct: 218 LAAAAAAAAAAAASSSSSAPAAAPPGAIPLNG-FLSYVQSRGLELKPGGCGGSGDAFGAA 276
Query: 127 SSSSSRCWSRGPTSGLGATLGGTVLPP----AARTPRDG----------LRDRGRLLSRN 172
+ + W P + G G PP + R PR+ R+R +
Sbjct: 277 AMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSR 336
Query: 173 STARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSW-----LPIM 227
A + S C + PA P G A+S V S LP+
Sbjct: 337 RAAAATAAAAASSCSS-----------PAPCSPPESWGRQSTASSFVDSSLSAFALLPLQ 385
Query: 228 LESEAGGTDAAGQAGWRSPGKSMGDAAAPGG--SLGNPRLRPGRGS---ANQTPGEAFPS 282
+ GG W+ P G P G L LR GS A + P E
Sbjct: 386 GGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEE---- 441
Query: 283 PVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGL 342
P AA+ +GG + + ST S L PP+ P PPS
Sbjct: 442 PEGAVAARAARGQGGRLPRTGRYAALRRRST-----SGLPDYRAPPSPEP-----PPS-- 489
Query: 343 PRPGTRWFRSFLPRPHSRPLSSHSLPSPK---GCSPPPPVDPGSSAAPTSGSFKNQAYPT 399
PG+ P S PL+ + PSP SPP D GSS + S N+ Y
Sbjct: 490 --PGS-------ADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSS-SNKGYTP 539
Query: 400 L 400
L
Sbjct: 540 L 540
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 46.2 bits (108), Expect = 6e-05
Identities = 46/150 (30%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 274 QTPGEAFPSPVSFSAAKLRSDRGGPS-WSISELSVDPQGSTVKQIPSSLQSREVPPTDAP 332
QT E F P + RS++ P +IS LS + K I ++LQ E ++
Sbjct: 583 QTDRETFLKPCESESKTTRSNQLVPKKLNISSLSQLSPPNDHKDIHAALQPMEGMASNQQ 642
Query: 333 SLLASPPSGLPRPGT--RWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSG 390
L PP+ +P P S P P P+S+ P P PPPP+ P SSA P
Sbjct: 643 KALPPPPASIPPPPPLPSGLGSLSPAPPMPPVSAGP-PLPPPPPPPPPLPPPSSAGPP-- 699
Query: 391 SFKNQAYPTLPNRRWPSSRSLWTPPNRRSP 420
P P P+S + PPN P
Sbjct: 700 -------PPPPPPPLPNSPA---PPNPGGP 719
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 46.2 bits (108), Expect = 6e-05
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 42/208 (20%)
Query: 196 PRP-GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
PRP P RP P ++ PP SG+ P E GG A SPG + +
Sbjct: 1150 PRPVAPPTRPAPPQRPPPP------SGARSPAPTRKEFGGIGAPP-----SPGVARREME 1198
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAK---------LRSDRGGPSWSISEL 305
AP + GR + G A P P +S A+ + + + S L
Sbjct: 1199 APKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL 1258
Query: 306 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLP---------- 355
+ + Q T + +S S +P P P S LP P R +P
Sbjct: 1259 TPESQSKTSE---TSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGP 1315
Query: 356 --------RPHSRPLSSHSLPSPKGCSP 375
+P R SSHSLPS P
Sbjct: 1316 QPNLETPPQPPPRSRSSHSLPSEASSQP 1343
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 297 GPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPR 356
G S S S + Q T+ + P + S + P+ APS PPS P + LP+
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ 1135
Query: 357 PH-SRPLSSHSLPSPKGCSP---------PPPVDPGSSAAPTSGSFKNQAYPTLP 401
++PL P P+ +P PPP S APT F P P
Sbjct: 1136 KDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSP 1190
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 46.2 bits (108), Expect = 6e-05
Identities = 54/208 (25%), Positives = 73/208 (35%), Gaps = 42/208 (20%)
Query: 196 PRP-GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAA 254
PRP P RP P ++ PP SG+ P E GG A SPG + +
Sbjct: 1150 PRPVAPPTRPAPPQRPPPP------SGARSPAPTRKEFGGIGAPP-----SPGVARREME 1198
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAK---------LRSDRGGPSWSISEL 305
AP + GR + G A P P +S A+ + + + S L
Sbjct: 1199 APKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRL 1258
Query: 306 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLP---------- 355
+ + Q T + +S S +P P P S LP P R +P
Sbjct: 1259 TPESQSKTSE---TSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGP 1315
Query: 356 --------RPHSRPLSSHSLPSPKGCSP 375
+P R SSHSLPS P
Sbjct: 1316 QPNLETPPQPPPRSRSSHSLPSEASSQP 1343
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 297 GPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPR 356
G S S S + Q T+ + P + S + P+ APS PPS P + LP+
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGP--VPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ 1135
Query: 357 PH-SRPLSSHSLPSPKGCSP---------PPPVDPGSSAAPTSGSFKNQAYPTLP 401
++PL P P+ +P PPP S APT F P P
Sbjct: 1136 KDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSP 1190
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 46.2 bits (108), Expect = 6e-05
Identities = 109/460 (23%), Positives = 151/460 (32%), Gaps = 85/460 (18%)
Query: 5 RGAETRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAG 64
R + TR L R + A+ S + ++ P R S T S A+ A +A
Sbjct: 100 RASRTRTLPRASLMRRPSTASLTRSPSRASLTTTPSRASLSMTPSTAA---ALTMPSRAS 156
Query: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
R PR A+ + A T PR A P+ S+T T M ++ L+
Sbjct: 157 LTRTPPR-----ASLTMTPSTASLTRTPPR--------ASPTGMPSRTSPTGMPSTASLT 203
Query: 125 KASSSSS--RCWSRGPTSGLGATLGGTVLPPAA------------RTPR----DGLRDRG 166
K S++S R SR +G T PP A RTP G+ R
Sbjct: 204 KMDSTASITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRT 263
Query: 167 RLLSRNSTA-------------------RRSFLELPSKCLTSWLWVIAPRPGPA------ 201
L +STA R S PS T+ L + PR P
Sbjct: 264 SLTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPS---TASLMRMLPRASPTGMLSRT 320
Query: 202 -----ERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAP 256
+ + PP A+ + P S A T +A SP S A+
Sbjct: 321 SLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRA---SPTGSPSTASLT 377
Query: 257 G-GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVK 315
G S +P P R S TP A + + R P+ +S S+ ST
Sbjct: 378 GLSSTASPTGTPPRASPTGTPSTA--------SLTRKPPRASPTGMLSRTSITKMDSTAS 429
Query: 316 QIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSP 375
P+ R P P + P+G P + P P ++ SP SP
Sbjct: 430 --PTRTPPRASPTGTPPR---ASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASP 484
Query: 376 PPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRS-LWTP 414
S S + + T R PS S WTP
Sbjct: 485 TGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTP 524
Score = 46.2 bits (108), Expect = 6e-05
Identities = 113/487 (23%), Positives = 168/487 (34%), Gaps = 99/487 (20%)
Query: 9 TRGLRRWGRLAAGGRAAARGSVPQPVKSSPPFRR-------SARPTDSLASRARAWRRRR 61
TR L R RA+ GS P+ S P A PT L SR +
Sbjct: 212 TRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGML-SRTSLTKMDS 270
Query: 62 QAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASN----SKTPCTCM 117
A R RP A + A T P A L+ +P AS S+T T M
Sbjct: 271 TASITRTPSRPSTASPTGTPSRASLSMT-----PSTASLMRMLPRASPTGMLSRTSLTKM 325
Query: 118 SASPRLSKAS--SSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTA 175
++ +S+ +S +R SR +G +T T P +R G L +STA
Sbjct: 326 DSTASISRTPPRASITRTPSRASPTGKPSTASPTGTP--SRASPTGSPSTASLTGLSSTA 383
Query: 176 -------RRSFLELPSKCLTSWLWVIAPRPGPA-----------ERPFPGEKGPPGAAAS 217
R S PS T+ L PR P + + PP A+ +
Sbjct: 384 SPTGTPPRASPTGTPS---TASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPT 440
Query: 218 AVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGG-SLGNPRLRPGRGSANQTP 276
P S A T A SP S A+ G S +P P R S +TP
Sbjct: 441 GTPPRASPTGTPSRASPTGTQSTA---SPTGSPSTASPTGSPSTASPTGSPSRASLTRTP 497
Query: 277 GEAFPSPVSFSAAKLRS-DRGGPSWSISELS----------------------------- 306
A + + +A+ R+ R P+W+ S S
Sbjct: 498 SRASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLT 557
Query: 307 --------VDPQGSTVKQIPSSLQSREVPPTDAPSLLAS--PPSGLPRPGTRWFRSFLPR 356
P +++ + PS++ +PP+ +P+ + S P+G+P + L +
Sbjct: 558 RTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPS------SALLTK 611
Query: 357 PHSRPLSSHSLPSPKGCSPPPPVDP-GSSAAPTSGSFKNQAYPT-LPNRRWPSSRSLWTP 414
S + + P PP P G+ + +A PT P R P+
Sbjct: 612 MDSTASITRTPPRASPTETPPRASPTGTPPRASPTGTPPRASPTGTPPRASPTG-----T 666
Query: 415 PNRRSPS 421
P+R SP+
Sbjct: 667 PSRASPT 673
Score = 40.8 bits (94), Expect = 0.002
Identities = 94/418 (22%), Positives = 141/418 (33%), Gaps = 62/418 (14%)
Query: 17 RLAAGGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWRRRRQAGCLRVVPRPGVAR 76
R + G + + P ++S +S+ S A R +A R +PR + R
Sbjct: 55 RASLKGTTSMASLMVSPSRASLTRMQSSSLLTRTPSMASLKRMPPRASRTRTLPRASLMR 114
Query: 77 AAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSR 136
+ + + P +A L AS S TP T A+ + +S +R R
Sbjct: 115 RPSTASLTRS--------PSRASLTTTPSRASLSMTPST---AAALTMPSRASLTRTPPR 163
Query: 137 GPTSGLGATLGGTVLPPAA-------RTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTS 189
+ +T T PP A RT G+ L +STA +T
Sbjct: 164 ASLTMTPSTASLTRTPPRASPTGMPSRTSPTGMPSTASLTKMDSTAS----------ITR 213
Query: 190 WLWVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKS 249
L +P P G PP A+ S + + L I A T + +
Sbjct: 214 TLSRASPTGTPPRASPTGS--PPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDST 271
Query: 250 MGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS-DRGGPSWSISELSVD 308
P RP S TP A S +A+ +R R P+ +S S+
Sbjct: 272 ASITRTPS--------RPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLT 323
Query: 309 PQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLP 368
ST PP + + S S +P T + P + S
Sbjct: 324 KMDSTAS-------ISRTPPRASITRTPSRASPTGKPST-----------ASPTGTPSRA 365
Query: 369 SPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPSSGVVR 426
SP G + SS A +G+ +A PT PS+ SL P R SP+ + R
Sbjct: 366 SPTGSPSTASLTGLSSTASPTGT-PPRASPT----GTPSTASLTRKPPRASPTGMLSR 418
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 46.2 bits (108), Expect = 6e-05
Identities = 86/340 (25%), Positives = 125/340 (36%), Gaps = 48/340 (14%)
Query: 101 LAAVPSASNSKTPCTCMSASPRLSKASSSSSRCWSRG-----PTSGLGATLGGTVLPPAA 155
LA PS S+S+TP + +P S +S P S L + P+A
Sbjct: 1509 LATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPF------PSA 1562
Query: 156 RTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGAA 215
P + LL+ S+A ++ + ++AP P P P P PGAA
Sbjct: 1563 PNPAPA---QASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAA 1619
Query: 216 -ASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGSANQ 274
A S + +P+M S GT A + +P P L P S+ Q
Sbjct: 1620 PVLASSQTPVPVMAPSSTPGTSLASASPVPAP---------------TPVLAP---SSTQ 1661
Query: 275 TPGEA-----FPSPVSFS----AAKLRSDRGG--PSWSISELSVDPQGSTVKQIPSSLQS 323
T A PSP S A L GG PS ++S + +PQG Q S +
Sbjct: 1662 TMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPA 1721
Query: 324 REVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGS 383
+ PT A +L +P P G S P P P S + P S
Sbjct: 1722 SSLVPTPAQTLSLAPG---PPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSAS 1778
Query: 384 SAAPTSGSFKNQAYPTLPNRRWPSSRSL-WTPPNRRSPSS 422
AP S + +P ++++L P + +SP+S
Sbjct: 1779 LLAPASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPAS 1818
Score = 37.0 bits (84), Expect = 0.034
Identities = 88/309 (28%), Positives = 116/309 (37%), Gaps = 50/309 (16%)
Query: 136 RGPTSGLGATLGG--TVLPPAARTPRDGLRDRGRLLSRNSTARRSFLEL---PSK----- 185
R P+SGL A L T+ P TP G R T R L+L PS
Sbjct: 1332 RPPSSGLPAVLNPRPTLTPGRLPTPTLGT---ARAPMPTPTLVRPLLKLVHSPSPEVSAS 1388
Query: 186 -------CLTSWLWVIAPRPGPAERPFPGEKGPPGAA--ASAVS---GSWLPIMLESEAG 233
++S L V + PGPA P P P A+ +S VS S LPI + +
Sbjct: 1389 APGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTT-- 1446
Query: 234 GTDAAGQAGWRSPGKSMGDAAAPGGSL---GNPRLRPGRGSANQTPGEAFPSPVSFSAAK 290
A A P + +A G +L P L P +A P A PS S SA+
Sbjct: 1447 -LPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLA-PSGASPSASA 1504
Query: 291 LRSDRG-GPSWSISE-----LSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR 344
L PS S S+ L + P S V + S++ P S LASP P
Sbjct: 1505 LTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPN 1564
Query: 345 PGTRWFRSFLP-----RPHSRPLSSHSLPSPK--GCSPPPPVDPGSSAAPTSGSFKNQAY 397
P P + + PL+ + P SP PP+ P AP+ G A
Sbjct: 1565 PAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPG-----AA 1619
Query: 398 PTLPNRRWP 406
P L + + P
Sbjct: 1620 PVLASSQTP 1628
Score = 35.8 bits (81), Expect = 0.076
Identities = 82/333 (24%), Positives = 116/333 (34%), Gaps = 58/333 (17%)
Query: 93 PRPFQARLLAAVPSASNS-KTPCTCMSASPRLSKASSSSSRCWSRGPTSGLGATLGGTVL 151
P P QA LLA SAS + TP M+A A S + P L + G +
Sbjct: 1565 PAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAP---PLAPLPVLAPSPGAAPV 1621
Query: 152 PPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLT-SWLWVIAPRPGPAERPFPGEKG 210
+++TP + S A S + P+ L S + P P P+ P
Sbjct: 1622 LASSQTPVPVMAPSS--TPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLP-----S 1674
Query: 211 PPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSL---------- 260
P A++ + P + S T + G + P + + P SL
Sbjct: 1675 PASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSL 1734
Query: 261 -GNPRLRPGRG-SANQTPGEAFPSPV------------SFSAAKLRSDRGGPSWSISELS 306
P L P + S P A SPV + S+A L + + ++S
Sbjct: 1735 APGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAP 1794
Query: 307 VDPQG----STVKQIPSSLQSREVPPTDAPSLLASPPSGLP--------------RPGTR 348
V G T+ P+S QS P + A SL+ S P P T
Sbjct: 1795 VPTLGPAAAQTLALAPASTQS---PASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTL 1851
Query: 349 WFRSFLPRPHSRPLSSHSLPSPKGCSPPPPVDP 381
RS P P S +S P P+ PPPP P
Sbjct: 1852 TLRSGPPSPPS-TATSFGGPRPRRQPPPPPRSP 1883
Score = 32.7 bits (73), Expect = 0.65
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 16/157 (10%)
Query: 232 AGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRLRPGRGS---ANQTPGEAFPSPVSFSA 288
AG + G G A G+ + RLR R AN TP SA
Sbjct: 2366 AGDESSCGTGGGTHRRSKKAKAPERPGTRVSERLRGARAETQGANHTP--------VISA 2417
Query: 289 AKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTR 348
+ RS P S + V + P+S + +P + A P P P T
Sbjct: 2418 HQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAA-IPALVPVPVSAPVPISAPNPITI 2476
Query: 349 WFRSFLPRP----HSRPLSSHSLPSPKGCSPPPPVDP 381
LP P P SS + P C+PPP P
Sbjct: 2477 LPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTP 2513
Score = 30.0 bits (66), Expect = 4.2
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 304 ELSVDPQGSTVKQI-PSSLQSREVPPTDAPSLLASPPSG---LP--RPGTRWFRSFLPRP 357
ELS P V Q+ P+SL P P + AS P G LP +P + LP P
Sbjct: 1031 ELSAQPTPGPVPQVLPASLMV-SASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSP 1089
Query: 358 HSRPLSSHSLPSPK-GCSPPPPVDPGSSAAPTSGS 391
+ P+P P PP S AP GS
Sbjct: 1090 LGVLSGTSRPPTPTLSLKPTPPAPVRLSPAPPPGS 1124
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 45.4 bits (106), Expect = 1e-04
Identities = 86/361 (23%), Positives = 125/361 (34%), Gaps = 61/361 (16%)
Query: 31 PQPVKSSP-PFRRSARPTDSLASRARAWRR--RRQAGCLRVVPRPGVARAAACCACACAG 87
PQP S P + RP ++ A + + +AG P AR CA G
Sbjct: 87 PQPYGGSKRPLPFAPRPAVEASTGGEATQETGKEEAGKEEPPPLTPPAR------CAAPG 140
Query: 88 RTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLSKASSSSSRCW-SRGPTSGLGATL 146
+ P PF+ A+ A+ + PR + +S R W SR + G++
Sbjct: 141 GVRKAPAPFRP---ASERFAATTVEEILAKMEQPR-KEVLASPDRLWGSRLTFNHDGSSR 196
Query: 147 GGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPSKCLTSWLWVIAPRPGPAERPFP 206
G PRD + G L R ++ ++ P++C R P++ F
Sbjct: 197 YGPRTYGTTTAPRD---EDGSTLFRG-WSQEGPVKSPAECREEHSKTPEERSLPSDLAFN 252
Query: 207 GE--KGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPR 264
G+ K + +S W+P S A ++ G A SPG A A G G+P
Sbjct: 253 GDLAKAASSELPADISKPWIP---SSPAPSSENGGPA---SPGLP---AEASGSGPGSPH 303
Query: 265 LRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSR 324
L P D+ P S + P+ S P+ S
Sbjct: 304 LHP-------------------------PDKSSPCHSQLLEAQTPEASQASPCPAVTPSA 338
Query: 325 EVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRP---LSSHSLPSPKGCSPPPPVDP 381
+P GLP G PRP S P L HSL P SP P ++
Sbjct: 339 PSAALPDEGSRHTPSPGLPAEGA----PEAPRPSSPPPEVLEPHSLDQPPATSPRPLIEV 394
Query: 382 G 382
G
Sbjct: 395 G 395
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 45.1 bits (105), Expect = 1e-04
Identities = 51/180 (28%), Positives = 65/180 (36%), Gaps = 12/180 (6%)
Query: 198 PGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPG---KSMGDAA 254
P PA RP P A V GS P + T+ G G S+GD A
Sbjct: 102 PTPARRPVGAHACPRRLPAWRVQGSSPPCCFPASQQITNTERSHGGDGRGVARASLGDKA 161
Query: 255 APGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGSTV 314
G R GRG Q+P EA + + + KL S P + + G T
Sbjct: 162 GAG--------RAGRGRPAQSPAEADAAARASKSLKLLSSALPPHLRPAAKTRAVAGPTA 213
Query: 315 KQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSLPSPKGCS 374
K+ P +L++ P P PS LP P P PH R SH GC+
Sbjct: 214 KESPPALRTVGDGPRPGPKRPDPAPSRLPPPPHAGALRGPPLPH-RLRRSHFREVGGGCA 272
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 45.1 bits (105), Expect = 1e-04
Identities = 55/232 (23%), Positives = 77/232 (33%), Gaps = 23/232 (9%)
Query: 192 WVIAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQA------GWRS 245
W RP E P K P +G+W P + GG A WR
Sbjct: 392 WAETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQ 451
Query: 246 PGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISEL 305
K SL R R R + E + + +L G P +
Sbjct: 452 RRKQSSSEI----SLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAE 507
Query: 306 SVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSH 365
P + P +E+P AP PP+ P P T P ++ +
Sbjct: 508 PAAPPAAPSTPAPPPAVPKELPAPPAP-----PPASAPTPETE------PEEPAQAPPAQ 556
Query: 366 SLPSPKGCSPPPPVDPGSSAAPT-SGSFK-NQAYPTLPNRRWPSSRSLWTPP 415
S P+P + P V G S + T SGSF+ + P LP++ P PP
Sbjct: 557 STPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPP 608
Score = 35.8 bits (81), Expect = 0.076
Identities = 54/219 (24%), Positives = 79/219 (36%), Gaps = 23/219 (10%)
Query: 198 PGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAG-QAGWRSPGKSMGDAAAP 256
P P R P E+ PPG S + + ++ AG Q G AP
Sbjct: 1434 PSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAP 1493
Query: 257 GGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAK--LRSD----------RGGPSWSISE 304
GG +PR +PG A Q P P+ L SD RG
Sbjct: 1494 GG---HPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDS 1550
Query: 305 LSVDP----QGSTVKQIPSSLQSREVPPTDAPSLLASPPSGL-PRPGTRWFRSFLPRPH- 358
V P + + P LQ +PP + L S P G P+ +R + PH
Sbjct: 1551 AGVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHI 1610
Query: 359 -SRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQA 396
+R ++ S S + S P ++P S +G+ +Q+
Sbjct: 1611 WNRLHTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQS 1649
Score = 33.1 bits (74), Expect = 0.49
Identities = 100/420 (23%), Positives = 131/420 (31%), Gaps = 96/420 (22%)
Query: 21 GGRAAARGSVPQPVKSSPPFRRSARPTDSLASRARAWR-----------RRRQAGCLRVV 69
G A+ P P K PP +A+ T A R A RR R
Sbjct: 869 GSDEVAKIQTPPP-KKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWG 927
Query: 70 PRPGVARAAAC-----CACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
PRPG +R AG + P P + L P +TP
Sbjct: 928 PRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETP----------- 976
Query: 125 KASSSSSRCWSRGPTSGLGATLGGTVLPPAARTPRDGLRDRGRLLSRNSTARRSFLELPS 184
K ++G G T L PA R RD +R S R +
Sbjct: 977 KPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFA--- 1033
Query: 185 KCLTSWLWVIAPRPGPAERPFPGEKGPPGAAA-SAVSGSWLPIMLESEAGGTDAAGQAGW 243
R F G G G A S S+ + GG G G
Sbjct: 1034 ----------------RGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGG----GTGGP 1073
Query: 244 RSPGKSMGDAAAPGGSLGN-----PRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGP 298
P G A+ S G+ P+ R RGS +T E S ++ SD+ P
Sbjct: 1074 NHPPAPRGRTASETRSEGSEYEEIPKRRRQRGS--ETGSETHESDLA------PSDKEAP 1125
Query: 299 SWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPH 358
+ P+ T+ Q+P + PP+ AP+ R R R F PR
Sbjct: 1126 T---------PKEGTLTQVPLAPPPPGAPPSPAPA----------RFTARGGRVFTPR-- 1164
Query: 359 SRPLSSHSLPSPKGCS---PPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPP 415
+PS +G PPP V PG S S + K LP + P L P
Sbjct: 1165 -------GVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGP 1217
Score = 32.7 bits (73), Expect = 0.65
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 6/114 (5%)
Query: 308 DPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFLPRPHSRPLSSHSL 367
D +G+ + S E PP SP S P P T W + P P + P
Sbjct: 351 DEEGAEGHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRP-PETEP----GP 405
Query: 368 PSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSRSLWTPPNRRSPS 421
P+PK PPP P + P G + ++ P W ++S S
Sbjct: 406 PAPKPPLPPPHRGPAGNWGP-PGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSS 458
Score = 30.8 bits (68), Expect = 2.5
Identities = 50/192 (26%), Positives = 64/192 (33%), Gaps = 42/192 (21%)
Query: 254 AAPGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVDPQGST 313
A P S P P A P ++ P+P +A L S GG S S +
Sbjct: 533 APPPASAPTPETEPEE-PAQAPPAQSTPTPGVAAAPTLVS--GGGSTSSTSSGSFEASPV 589
Query: 314 VKQIPSSL---QSREVPPTDAPSLLASPPSG--------LPRPGTRW--FRSFLPRPHSR 360
Q+PS EVPP P + P G P G + ++ LP R
Sbjct: 590 EPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQR 649
Query: 361 PLSSHSL-----------------PSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNR 403
L P+P SPP PV G+ AP QA P P
Sbjct: 650 QQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAP-------QAPPPPPKA 702
Query: 404 RWPSSRSLWTPP 415
+P +L PP
Sbjct: 703 LYPG--ALGRPP 712
Score = 28.9 bits (63), Expect = 9.3
Identities = 65/272 (23%), Positives = 88/272 (32%), Gaps = 60/272 (22%)
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
+AP+ P P P K P + G P+ GG++ + G R + G A
Sbjct: 1192 LAPKKPPTG-PLPPSKEP--LKEKLIPGPLSPVARGGSNGGSNVGMEDGERPRRRRHGRA 1248
Query: 254 A-----------------APGGSLGNPRLR-----PGRGSANQTPGEAFPSPVSFSA--- 288
A GS G P L PG A T A P+P +A
Sbjct: 1249 QQQDKPPRFRRLKQERENAARGSEGKPSLTLPASAPGPEEALTTVTVA-PAPRRAAAKSP 1307
Query: 289 --AKLRSDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPG 346
+ SD+ W + S D +E PP P LL G P G
Sbjct: 1308 DLSNQNSDQANEEWETASESSDFTSER-------RGDKEAPP---PVLLTPKAVGTPGGG 1357
Query: 347 --------TRWFRSFLPRPHSRPLSSHSLPSPK------GCSPPPPVDPGSSAAPTSGSF 392
+ R L + ++ LS S S + P P GSS + + G
Sbjct: 1358 GGGAVPGISAMSRGDLSQ-RAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGG 1416
Query: 393 KNQAYPTLPNR----RWPSSRSLWTPPNRRSP 420
T P R WPS ++ PP R P
Sbjct: 1417 GGPGGRTGPGRGDKRSWPSPKNRSRPPEERPP 1448
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.1 bits (105), Expect = 1e-04
Identities = 68/251 (27%), Positives = 89/251 (35%), Gaps = 55/251 (21%)
Query: 198 PGPAERP-FPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAP 256
PGP +P +PG GPPG ++ E G T +AG+ G P S G P
Sbjct: 1083 PGPPGQPGYPGATGPPGLPG-----------IKGERGYTGSAGEKGEPGPPGSEGLPGPP 1131
Query: 257 G--------GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSISELSVD 308
G G GN + +G Q PG FP P + GP +E
Sbjct: 1132 GPAGPRGERGPQGNSGEKGDQGFQGQ-PG--FPGPPGPPGFPGKVGSPGPPGPQAE---- 1184
Query: 309 PQGSTVKQIPSSLQSREVPPTDAPSLLASP------------PSGLPRPGTRWFRSFLPR 356
+GS + PS L PP P + P P PG +
Sbjct: 1185 -KGSEGIRGPSGLPGSPGPP--GPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGP 1241
Query: 357 PHSRPLSSH-SLPSPKG-CSPPPPVDPGSSAAPTS----GSFKNQAYPTLPNRRWPSSRS 410
P + + H LP PKG C P P PGS+ P + G+ Q P P P
Sbjct: 1242 PGFKGKTGHPGLPGPKGDCGKPGP--PGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPG-- 1297
Query: 411 LWTPPNRRSPS 421
PP + P+
Sbjct: 1298 ---PPGQPGPA 1305
Score = 37.0 bits (84), Expect = 0.034
Identities = 83/344 (24%), Positives = 107/344 (31%), Gaps = 60/344 (17%)
Query: 62 QAGCLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTC-MSAS 120
Q G +RVV PG + G +Q + + L A N P T +
Sbjct: 642 QDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGR 701
Query: 121 PRLSKASSSSSRCWSRGPTSGLGAT----LGGTVLPPAARTPRDGLRDRGRLLSRNSTAR 176
P LS +G G G T L GTV A R + G + +
Sbjct: 702 PGLSGEPGVQGPAGPKGE-KGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGK 760
Query: 177 RSFLELPSKCLTSWLWVIAPRPGPAERPFPGEKGPPGA-AASAVSGSWLPIMLESEAGGT 235
LP L + PGP R G +G PGA + G P G
Sbjct: 761 PGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEK 820
Query: 236 DAAGQAGWRSPGKSMGDAAAPGGSLGNPRLR---PGRGSANQTPGEAFPSPVSFSAAKLR 292
A G G + + G PG S+ P R G+ TPGE P R
Sbjct: 821 GAQGSPGVKG---ATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGP----------R 867
Query: 293 SDRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLP-RPGTRWFR 351
++G P E S QG + SG+P PG
Sbjct: 868 GEKGEP----GECSCPSQGDLIF------------------------SGMPGAPGLWMGS 899
Query: 352 SFLPRPHSRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQ 395
S+ P P P +P P P PP PG P + Q
Sbjct: 900 SWQPGPQGPP----GIPGP----PGPPGVPGLQGVPGNNGLPGQ 935
Score = 31.2 bits (69), Expect = 1.9
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
Query: 194 IAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
+ R P + GEKG P + S+V G+ L S G + G G+ PG G A
Sbjct: 537 VPARGDPGIQGIKGEKGEPCLSCSSVVGAQ---HLVSSTGASGDVGSPGFGLPGLP-GRA 592
Query: 254 AAPG--GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGP 298
PG G GN G A P PV A ++ +G P
Sbjct: 593 GVPGLKGEKGN------FGEAGPAGSPGPPGPV--GPAGIKGAKGEP 631
Score = 30.8 bits (68), Expect = 2.5
Identities = 56/230 (24%), Positives = 72/230 (31%), Gaps = 70/230 (30%)
Query: 197 RPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRS----------P 246
RPGP PG GPPG + L+ + G T G AG P
Sbjct: 1286 RPGP-----PGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPP 1340
Query: 247 GKSMGDAAA-------------PGGSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRS 293
G+ D AA P G G+P +G A + P
Sbjct: 1341 GEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMP------------ 1388
Query: 294 DRGGPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPR-PGT----- 347
GGP S S V P P R P PS SP GLP PG+
Sbjct: 1389 --GGPGKSGSMGPVGP--------PGPAGERGHPGAPGPS--GSP--GLPGVPGSMGDMV 1434
Query: 348 ------RWFRSFLPRPHSRPLSSHS----LPSPKGCSPPPPVDPGSSAAP 387
R+ R + + ++ ++ P +P P PG AP
Sbjct: 1435 NYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAP 1484
Score = 28.9 bits (63), Expect = 9.3
Identities = 32/112 (28%), Positives = 36/112 (32%), Gaps = 26/112 (23%)
Query: 201 AERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG--- 257
AE P GEKG GA + S LP G T GQ G + G G PG
Sbjct: 373 AEGP-KGEKGESGA----LGPSGLP-------GSTGEKGQKGEKGDGGIKGVPGKPGRDG 420
Query: 258 -----------GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGP 298
G G+P G A + P P D GGP
Sbjct: 421 RPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGP 472
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 44.7 bits (104), Expect = 2e-04
Identities = 67/252 (26%), Positives = 88/252 (34%), Gaps = 48/252 (19%)
Query: 198 PGPAERPFPGEKGPPGAAASA----------VSGSWLPIMLESEAGGTDAAGQAGWRSPG 247
PGPA GE+GPPG + +A SG P + E G A G AG P
Sbjct: 582 PGPAGPR--GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPS 639
Query: 248 KSMGDAAAPG-----GSLGNPRLR-----PGRGSANQTPGE-AFPSPVSFSAAKLRSDRG 296
G+ A G G G P LR PGR A PG P P + + +
Sbjct: 640 GLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAA 699
Query: 297 GPSWSISELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSFL-P 355
GP+ P+GS ++ EV P P+ A P +PG + R P
Sbjct: 700 GPAG-----PAGPRGSPGER-------GEVGPA-GPNGFAGPAGAAGQPGAKGERGAKGP 746
Query: 356 RPH------SRPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGSFKNQAYPTLPNRRWPSSR 409
+ + P+ + P G P P G P F A T P P
Sbjct: 747 KGENGVVGPTGPVGAAGPAGPNG-PPGPAGSRGDGGPPGMTGFPGAAGRTGP----PGPS 801
Query: 410 SLWTPPNRRSPS 421
+ PP P+
Sbjct: 802 GISGPPGPPGPA 813
Score = 42.4 bits (98), Expect = 8e-04
Identities = 64/216 (29%), Positives = 79/216 (36%), Gaps = 31/216 (14%)
Query: 196 PRPGPAERPFPGEKGPPGAA----------ASAVSGSWLPIMLESEAGGTDAAGQAGWRS 245
PR P ER G GP G A A G+ P G T G AG
Sbjct: 707 PRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 246 PGKSMGDAAAPGGSLGNPRLRPGRGSANQTPGEAFPSPVS--------FSAAKLRSDRG- 296
P G A + G G P + G+A +T G PS +S LR RG
Sbjct: 767 PNGPPGPAGSRGDG-GPPGMTGFPGAAGRT-GPPGPSGISGPPGPPGPAGKEGLRGPRGD 824
Query: 297 -GPSWSISEL-SVDPQGSTVKQIPSSLQSREVPP-TDAPSLLASPPSGLPRPGTRWFRSF 353
GP E+ +V P G ++ PS PP T P L P L PG+R R
Sbjct: 825 QGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERG- 883
Query: 354 LPRPHSRPLSSHSLPSPKGCSPPPPV--DPGSSAAP 387
LP + P P G + PP PG+ +P
Sbjct: 884 LP----GVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Score = 35.4 bits (80), Expect = 0.100
Identities = 56/222 (25%), Positives = 66/222 (29%), Gaps = 48/222 (21%)
Query: 198 PGPAERPFPGEKGPPGAAAS----AVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDA 253
PGP+ G GPPG A G P+ E G G AG + P G A
Sbjct: 798 PGPSG--ISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTA 855
Query: 254 AAPG-----------GSLGNPRLRPGRGSANQTPGEAFPSPVSFSAAKLRSDRGGPSWSI 302
PG G LG P R RG P P+ + RG P
Sbjct: 856 GPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPP--GARGPPG--- 910
Query: 303 SELSVDPQGSTVKQIPSSLQSREVPPTDAPSLLASPPSGLPRPGTRWFRSF--------- 353
+V G V P P D PP +PG + R +
Sbjct: 911 ---AVGSPG--VNGAPGEAGRDGNPGND------GPPGRDGQPGHKGERGYPGNIGPVGA 959
Query: 354 --LPRPHS--RPLSSHSLPSPKGCSPPPPVDPGSSAAPTSGS 391
P PH P H G P PV P + P S
Sbjct: 960 AGAPGPHGPVGPAGKHGNRGETG--PSGPVGPAGAVGPRGPS 999
Score = 33.9 bits (76), Expect = 0.29
Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 199 GPAERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPG- 257
GP G +GPPGAA G+ P + AG GQ G P + G A PG
Sbjct: 89 GPGPMGLMGPRGPPGAA-----GAPGPQGFQGPAGEPGEPGQTG---PAGARGPAGPPGK 140
Query: 258 -GSLGNPRLRPGRGSANQTPGE 278
G G+P +PGR PGE
Sbjct: 141 AGEDGHPG-KPGR------PGE 155
Score = 32.3 bits (72), Expect = 0.84
Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 23/113 (20%)
Query: 198 PGPAE-RPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAP 256
PGP R PG +G PGA A + G A+G AG R P GDA P
Sbjct: 393 PGPPGLRGSPGSRGLPGADGRAG--------VMGPPGSRGASGPAGVRGPN---GDAGRP 441
Query: 257 G-GSLGNPRLRPGRGSANQTPGEAFPS----PVSFSAAKLRSDRGGPSWSISE 304
G L PR PG +PG P+ PV R GP+ + E
Sbjct: 442 GEPGLMGPRGLPG------SPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGE 488
Score = 29.3 bits (64), Expect = 7.1
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 22/88 (25%)
Query: 198 PGPA-ERPFPGEKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAP 256
PGPA + G KG PG+A G +G+ G R P G A P
Sbjct: 348 PGPAGSKGESGNKGEPGSAGPQ--------------GPPGPSGEEGKRGPNGEAGSAGPP 393
Query: 257 G--GSLGNPRLR-----PGRGSANQTPG 277
G G G+P R GR PG
Sbjct: 394 GPPGLRGSPGSRGLPGADGRAGVMGPPG 421
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,074,117
Number of Sequences: 37866
Number of extensions: 1524947
Number of successful extensions: 11506
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1093
Number of HSP's that attempted gapping in prelim test: 8355
Number of HSP's gapped (non-prelim): 3538
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.