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Search of human proteins with 239745348
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo ... 281 8e-77
gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo ... 280 3e-76
gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo ... 265 6e-72
gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo ... 70 5e-13
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 62 2e-10
gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA he... 59 1e-09
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 59 1e-09
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 59 1e-09
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 57 6e-09
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 30 0.43
gi|105990532 apolipoprotein B precursor [Homo sapiens] 29 1.3
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 28 1.6
gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens] 27 3.7
gi|31543657 StAR-related lipid transfer (START) domain containin... 27 4.8
gi|13128990 hypothetical protein LOC79000 [Homo sapiens] 27 4.8
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 27 6.3
gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens] 26 8.2
gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens] 26 8.2
gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens] 26 8.2
gi|150378498 fragile site-associated protein [Homo sapiens] 26 8.2
gi|122937456 T-box 18 [Homo sapiens] 26 8.2
gi|46397377 chromosome 14 open reading frame 68 [Homo sapiens] 26 8.2
gi|70995241 ankyrin repeat domain 10 [Homo sapiens] 26 8.2
>gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo
sapiens]
Length = 133
Score = 281 bits (720), Expect = 8e-77
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP
Sbjct: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo
sapiens]
Length = 133
Score = 280 bits (715), Expect = 3e-76
Identities = 132/133 (99%), Positives = 132/133 (99%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP
Sbjct: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
EITFLTAFCLPSFTRSRPLPDRQL HCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo
sapiens]
Length = 133
Score = 265 bits (678), Expect = 6e-72
Identities = 127/133 (95%), Positives = 128/133 (96%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
MSESINFS NLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDH LVSVPSVAESLHHP
Sbjct: 1 MSESINFSDNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHNLVSVPSVAESLHHP 60
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQES 120
EITFLTAFCLPSFTRSRPLPDRQL HCLAL PSFALPAGDGVCHGP LQGSCYKGETQ+S
Sbjct: 61 EITFLTAFCLPSFTRSRPLPDRQLHHCLALRPSFALPAGDGVCHGPDLQGSCYKGETQKS 120
Query: 121 VESRVLPGPRHRH 133
VESRVLPGPRHRH
Sbjct: 121 VESRVLPGPRHRH 133
>gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo
sapiens]
Length = 45
Score = 70.1 bits (170), Expect = 5e-13
Identities = 33/34 (97%), Positives = 34/34 (100%)
Query: 23 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAES 56
MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAE+
Sbjct: 1 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 61.6 bits (148), Expect = 2e-10
Identities = 37/76 (48%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHP 60
MSE INFS NLG RCVVM GMPFP+IRS ELQ+ A LD TL P A HP
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA----HP 828
Query: 61 EITFLTAFCLPSFTRS 76
+ C+ + +S
Sbjct: 829 GKALVENLCMKAVNQS 844
>gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA
helicase DDX11-like protein [Homo sapiens]
Length = 223
Score = 58.5 bits (140), Expect = 1e-09
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
MSE INFS NLG RCVVM GMPFP+IRS ELQ+ A LD TL P A
Sbjct: 96 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 143
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 58.5 bits (140), Expect = 1e-09
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
MSE INFS NLG RCVVM GMPFP+IRS ELQ+ A LD TL P A
Sbjct: 729 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 776
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 58.5 bits (140), Expect = 1e-09
Identities = 33/54 (61%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVA 54
MSE INFS NLG RCVVM GMPFP+IRS ELQ+ A LD TL P A
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQA 826
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 56.6 bits (135), Expect = 6e-09
Identities = 32/51 (62%), Positives = 34/51 (66%), Gaps = 6/51 (11%)
Query: 1 MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVP 51
MSE INFS NLG RCVVM GMPFP+IRS ELQ+ A LD TL P
Sbjct: 779 MSEGINFSDNLG------RCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRP 823
>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 1 [Homo sapiens]
Length = 724
Score = 30.4 bits (67), Expect = 0.43
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 LSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEI 62
+SPP P P P +P KT AD++ +++P +AE P+I
Sbjct: 82 ISPPTPKPRPPRPLPV--APGSSKTEADVEQQALTLPDLAEQFAPPDI 127
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 28.9 bits (63), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 26 MPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFT 74
+P +R P +Q DL + + +PS + PE T L F +PSFT
Sbjct: 2619 VPLTDLRIPSVQINFKDLKN--IKIPSRFST---PEFTILNTFHIPSFT 2662
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 61 EITFLTAFCLPSFTRSRPLPDRQLQHCLALCPSFALPAGDGVCHGPGLQGSCYKG 115
E+T+ A L + +RP P + C A A PA G P +CY G
Sbjct: 686 ELTWALALALAAVAAARPRPPTE-HACWAKLMRLACPAPSGKSEVPERPNNCYAG 739
>gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens]
Length = 732
Score = 27.3 bits (59), Expect = 3.7
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 5 INFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVS-VPSVAESL 57
IN + LG P CVV G PF S P+L LD + + +P V L
Sbjct: 614 INIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYIPQVKTPL 667
>gi|31543657 StAR-related lipid transfer (START) domain containing
3 [Homo sapiens]
Length = 445
Score = 26.9 bits (58), Expect = 4.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 37 QKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDRQLQHCL 88
++ T DL+ +L +V S+ SL H + L++ LP + R + D + CL
Sbjct: 6 RELTRDLERSLPAVASLGSSLSHSQ--SLSSHLLPPPEKRRAISDVRRTFCL 55
>gi|13128990 hypothetical protein LOC79000 [Homo sapiens]
Length = 357
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 22 VMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHH 59
++PG+ + SP TTAD+ +S S+ S HH
Sbjct: 106 LIPGLAHDCMASPLATSTTADIQEAGLSPQSLQTSGHH 143
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 26.6 bits (57), Expect = 6.3
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 70 LPSFTRSRPLPDRQLQHCLALCPSFALPAGDGV-CHGPGLQGSCYKGETQESVESRVLPG 128
L S R R + R +HC A P P G+G P + + S E++ L G
Sbjct: 71 LRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGG 130
Query: 129 PRHRH 133
P RH
Sbjct: 131 PASRH 135
>gi|169213965 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 12 GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
G +PPRC G P P+ SP + TL+ +AE H +I+ + +C
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226
Query: 72 SFTRSRPLP 80
S P P
Sbjct: 227 SVQDDAPFP 235
>gi|239751822 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 12 GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
G +PPRC G P P+ SP + TL+ +AE H +I+ + +C
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226
Query: 72 SFTRSRPLP 80
S P P
Sbjct: 227 SVQDDAPFP 235
>gi|239746313 PREDICTED: similar to hCG1645909 [Homo sapiens]
Length = 591
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 12 GQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLP 71
G +PPRC G P P+ SP + TL+ +AE H +I+ + +C
Sbjct: 172 GGTTTPPRCPDSCGHPRPASSSPPGDRKGGQSQLTLL---DLAEDTIHCDIS--SCWCQG 226
Query: 72 SFTRSRPLP 80
S P P
Sbjct: 227 SVQDDAPFP 235
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 26.2 bits (56), Expect = 8.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 22 VMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLP 80
+M G PS LQ +DL+ T+ +P V LH+ T T P+ +R LP
Sbjct: 3852 LMTGKKVPS----SLQTKPSDLETTVFYIPGVDVKLHYNSKTLKTE--SPNASRGSSLP 3904
>gi|122937456 T-box 18 [Homo sapiens]
Length = 607
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 SPPRCVVMPGMPFPSIRSPELQKTTADL 43
SP R + PG P PS ++P + A+L
Sbjct: 121 SPARSLARPGTPLPSPQAPRVDLQGAEL 148
>gi|46397377 chromosome 14 open reading frame 68 [Homo sapiens]
Length = 308
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 12 GQLLSPPRCVVMPGMPFPSIRSP 34
G L PP C V P P P R P
Sbjct: 140 GPLAVPPMCPVPPACPEPKYRGP 162
>gi|70995241 ankyrin repeat domain 10 [Homo sapiens]
Length = 420
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 24 PGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLH 58
PG PFPS + T + + TL + P + SLH
Sbjct: 315 PGQPFPSSQGSLCISGTEEPEKTLRANPELCGSLH 349
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,593,459
Number of Sequences: 37866
Number of extensions: 333096
Number of successful extensions: 811
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 23
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.