Guide to the Human Genome
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Name: LOC100287399 Sequence: fasta or formatted (544aa) NCBI GI: 239745058
Description:

PREDICTED: hypothetical protein XP_002343353

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         30           2
 C cysteine            3.1         17           2
 D aspartate           6.4         35           2
 E glutamate          10.3         56           3
 F phenylalanine       1.3          7           1
 G glycine             5.1         28           1
 H histidine           3.1         17           3
 I isoleucine          3.9         21           1
 K lysine              9.2         50           3
 L leucine            11.0         60           3
 M methionine          2.6         14           1
 N asparagine          6.1         33           1
 P proline             2.8         15           1
 Q glutamine           5.3         29           2
 R arginine            5.0         27           2
 S serine              7.7         42           2
 T threonine           3.9         21           1
 V valine              5.0         27           2
 W tryptophan          0.9          5           2
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343353 
POTEB                 0.974   protein expressed in prostate, ovary, testis, and pl...
LOC100288966          0.950   PREDICTED: hypothetical protein XP_002343915 isofor...
POTED                 0.940   pote protein 
LOC100288966          0.939   PREDICTED: hypothetical protein XP_002343914 isofor...
POTEC                 0.880   ANKRD26-like family B, member 2 
LOC653269             0.839   PREDICTED: similar to protein expressed in prostate...
ACTBL3                0.833   PREDICTED: actin, beta-like 3 
ACTBL3                0.831   PREDICTED: actin, beta-like 3 
ACTBL3                0.830   PREDICTED: kappa-actin 
POTEG                 0.756   POTE ankyrin domain family, member G 
P704P                 0.751   prostate-specific P704P 
POTEH                 0.750   ANKRD26-like family C, member 3 
LOC653781             0.729   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.715   PREDICTED: similar to protein expressed in prostate,...
POTEF                 0.713   prostate, ovary, testis expressed protein on chromo...
POTEE                 0.713   protein expressed in prostate, ovary, testis, and p...
POTEA                 0.562   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEA                 0.480   POTE ankyrin domain family, member A isoform 1 [Homo...
ANKRD62               0.259   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD62               0.257   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.257   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD20A3             0.212   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.212   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.212   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.212   ankyrin repeat domain 20 family, member A4 
ANKRD18B              0.209   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.209   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.208   PREDICTED: ankyrin repeat domain 18B 
ANKRD20A5             0.204   PREDICTED: ankyrin repeat domain 20 family, member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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