Guide to the Human Genome
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Name: LOC646079 Sequence: fasta or formatted (368aa) NCBI GI: 239745044
Description:

PREDICTED: similar to breast cancer anti-estrogen resistance 1

Referenced in:

Mammary Tissues
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [224aa] PREDICTED: similar to breast cancer anti-estrogen resistance 1
alt prot [232aa] PREDICTED: similar to breast cancer anti-estrogen resistance 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         29           2
 C cysteine            2.7         10           1
 D aspartate           3.3         12           1
 E glutamate           3.8         14           1
 F phenylalanine       1.6          6           1
 G glycine             8.4         31           2
 H histidine           3.0         11           2
 I isoleucine          3.0         11           1
 K lysine              3.5         13           2
 L leucine             8.2         30           2
 M methionine          2.2          8           1
 N asparagine          1.6          6           1
 P proline            13.9         51           2
 Q glutamine           5.7         21           2
 R arginine            4.3         16           1
 S serine             10.1         37           2
 T threonine           6.5         24           2
 V valine              5.4         20           2
 W tryptophan          1.4          5           2
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to breast cancer anti-estrogen r... 
LOC100133063          0.756   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.570   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.570   PREDICTED: similar to breast cancer anti-estrogen r...
BCAR1                 0.555   breast cancer anti-estrogen resistance 1 
NEDD9                 0.146   neural precursor cell expressed, developmentally down...
NEDD9                 0.143   neural precursor cell expressed, developmentally do...
NEDD9                 0.134   neural precursor cell expressed, developmentally dow...
EFS                   0.116   embryonal Fyn-associated substrate isoform 1 
CASS4                 0.085   HEF-like protein 
FCHSD2                0.053   FCH and double SH3 domains 2 
CD2AP                 0.044   CD2-associated protein 
SH3KBP1               0.041   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.041   SH3-domain kinase binding protein 1 isoform a 
SNX18                 0.041   sorting nexin 18 isoform c 
SNX18                 0.041   sorting nexin 18 isoform a 
SNX18                 0.041   sorting nexin 18 isoform b 
FCHSD1                0.039   FCH and double SH3 domains 1 
C1orf113              0.037   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.037   SH3 domain-containing protein C1orf113 isoform 2 [H...
PSTPIP1               0.036   proline-serine-threonine phosphatase interacting pro...
KIAA1804              0.036   mixed lineage kinase 4 
PPP1R13L              0.035   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.035   protein phosphatase 1, regulatory subunit 13 like [H...
SFPQ                  0.035   splicing factor proline/glutamine rich (polypyrimidin...
SUPT5H                0.033   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.033   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.033   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.033   suppressor of Ty 5 homolog isoform a 
RERE                  0.033   atrophin-1 like protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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