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Search of human proteins with 239744530
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744530 PREDICTED: hypothetical protein XP_002343182 [Homo
sapiens]
(223 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744530 PREDICTED: hypothetical protein XP_002343182 [Homo ... 458 e-129
gi|24308227 zinc finger protein 687 [Homo sapiens] 33 0.20
gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 33 0.26
gi|150378552 sushi domain containing 5 [Homo sapiens] 33 0.26
gi|38372909 jumonji domain containing 1B [Homo sapiens] 32 0.44
gi|4758216 dishevelled 2 [Homo sapiens] 30 2.2
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 30 2.2
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 30 2.2
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 30 2.2
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 30 2.2
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 30 2.2
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 29 2.8
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 29 3.7
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 29 3.7
gi|154759273 testis specific, 10 interacting protein [Homo sapiens] 29 3.7
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 29 3.7
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 29 3.7
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 28 4.8
gi|150418009 transforming, acidic coiled-coil containing protein... 28 4.8
gi|153792074 proline rich 12 [Homo sapiens] 28 4.8
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap... 28 6.3
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 28 6.3
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 28 6.3
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 28 6.3
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 28 6.3
gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [... 28 6.3
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 28 6.3
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 28 8.2
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 8.2
gi|23503297 protease, serine, 35 [Homo sapiens] 28 8.2
>gi|239744530 PREDICTED: hypothetical protein XP_002343182 [Homo
sapiens]
Length = 223
Score = 458 bits (1179), Expect = e-129
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MPVPGSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSG 60
MPVPGSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSG
Sbjct: 1 MPVPGSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSG 60
Query: 61 ETGQTKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGV 120
ETGQTKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGV
Sbjct: 61 ETGQTKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGV 120
Query: 121 SLVQEHYAGRIPLVPDGPAFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLPF 180
SLVQEHYAGRIPLVPDGPAFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLPF
Sbjct: 121 SLVQEHYAGRIPLVPDGPAFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLPF 180
Query: 181 SSPCLSTQLEAARLAYGLVDSLHAQVLHQSLSWGPLAWALSWE 223
SSPCLSTQLEAARLAYGLVDSLHAQVLHQSLSWGPLAWALSWE
Sbjct: 181 SSPCLSTQLEAARLAYGLVDSLHAQVLHQSLSWGPLAWALSWE 223
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 33.1 bits (74), Expect = 0.20
Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 23/147 (15%)
Query: 52 PVRKRPTSGETGQTKGSE-KCDLGVVEALGKGKG--RSELPHSSNGRTKGG--------- 99
P P SG T + KG E K L + G G LP S+ T+ G
Sbjct: 138 PHSPAPPSGGTWKEKGMEGKTPLDLFAHFGPEPGDHSDPLPPSAPSPTREGALTPPPFPS 197
Query: 100 -FDLHEGSDPGQQPVQDRVPGVSLVQEHYAGRIP--LVPDGPAFVGTEAKALSYSCLPNS 156
F+L + + PG QP P +L QE + P L G G+ KA +P S
Sbjct: 198 SFELAQENGPGMQPPVSSPPLGALKQESCSPHHPQVLAQQGS---GSSPKATD---IPAS 251
Query: 157 ASPFPSSASGGRQGRQPPFPLLPFSSP 183
ASP P +G +Q P P +SP
Sbjct: 252 ASPPP--VAGVPFFKQSPGHQSPLASP 276
>gi|206597522 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform b [Homo sapiens]
Length = 961
Score = 32.7 bits (73), Expect = 0.26
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 79 LGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQEHYAGRIPLVPDGP 138
L K K R+ +P T G L GS P QP + G+ PL P P
Sbjct: 745 LAKEKQRAFMPSILQNETYGA--LLSGSPPPAQPAAPSTTSAPPLPPRNVGKDPLTPTPP 802
Query: 139 AFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLP 179
V + P+ +P G Q R PP P P
Sbjct: 803 PPVAKTPSVMEALSQPSKPAP-----PGISQIRPPPLPPQP 838
>gi|150378552 sushi domain containing 5 [Homo sapiens]
Length = 629
Score = 32.7 bits (73), Expect = 0.26
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 31/134 (23%)
Query: 74 GVVEALGKGKGRSELPHSSN---------------GRTKGGFDLHEGSDPGQQPVQDRVP 118
G+V+A GK + + + + N RT+ D +G + P QDR+
Sbjct: 192 GLVQACGKDEAEAHIDYEDNFPDDRSVSFRELMEDSRTEADEDRGQGDSSEEAPKQDRLV 251
Query: 119 GVSLVQEHYAGRIPLVPDGPAFVGTEAKALSYSCLPNSASPFPSSASGGR--QGRQPPFP 176
+S+ +E+ A VP + LP + S P+ + G R Q FP
Sbjct: 252 SISVGRENIARDKVFVPT--------------TGLPGAGSSVPADSPGSRLLQKHLFWFP 297
Query: 177 LLPFSSPCLSTQLE 190
F P L +++
Sbjct: 298 AEAFHKPGLEKEVD 311
>gi|38372909 jumonji domain containing 1B [Homo sapiens]
Length = 1761
Score = 32.0 bits (71), Expect = 0.44
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 39 SKGRAQRQAVVQLPVRKRPTSGETGQTKGSEKC--DLGVVEALGKGKGRSELPHSSNGRT 96
SKG+ +R+++ R+R ++ ++G S+K D G V++ G G +S G
Sbjct: 270 SKGKKKRESIEGKDGRRRKSASDSGCDPASKKLKGDRGEVDSNGSDGG-----EASRGPW 324
Query: 97 KGGFDLHEGSDPG-----QQPVQDRVPGVS-----LVQEHYAGRIPLVPDGPAFVGTEAK 146
KGG + +PG +QP VP ++ GR +V D P T A
Sbjct: 325 KGG---NASGEPGLDQRAKQPPSTFVPQINRNIRFATYTKENGRTLVVQDEPVGGDTPAS 381
Query: 147 ALSYS 151
YS
Sbjct: 382 FTPYS 386
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 29.6 bits (65), Expect = 2.2
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 2 PVPGSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSG--QSKGRAQRQAVVQLPVRKRPTS 59
P P S Q H L +T+ GS ++ + SSG +S G A R P + P S
Sbjct: 558 PHPYSPQPPPYHELSSYTYGGGSASSQHSEGSRSSGSTRSDGGAGRTG---RPEERAPES 614
Query: 60 GETGQTKGSEKCDLGVVEALGKGKGRSE-LPHSSNGRTKGGFDL--HEGSDPGQQPVQDR 116
++ G + G+ G S+ P S G T G +L H G P P
Sbjct: 615 KSGSGSESEPSSRGGSLRRGGEASGTSDGGPPPSRGSTGGAPNLRAHPGLHPYGPP---- 670
Query: 117 VPGVSL 122
PG++L
Sbjct: 671 -PGMAL 675
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 81 KGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQEHYAGRIPLVPDGPAF 140
+G+GR P S RT G E + PG ++D P +S + ++ +P VPD
Sbjct: 1401 RGRGRRGRPPS---RTTG---TRETAVPGPLGIEDISPNLSPDDKSFSRVVPRVPDSTRR 1454
Query: 141 VGTEAKALSYSCLPNSASPFPSSASGGRQGRQP 173
A AL S P + S G P
Sbjct: 1455 TDVGAGALRRSDSPEIPFQAAAGPSDGLDASSP 1487
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 81 KGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQEHYAGRIPLVPDGPAF 140
+G+GR P S RT G E + PG ++D P +S + ++ +P VPD
Sbjct: 1401 RGRGRRGRPPS---RTTG---TRETAVPGPLGIEDISPNLSPDDKSFSRVVPRVPDSTRR 1454
Query: 141 VGTEAKALSYSCLPNSASPFPSSASGGRQGRQP 173
A AL S P + S G P
Sbjct: 1455 TDVGAGALRRSDSPEIPFQAAAGPSDGLDASSP 1487
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 29.6 bits (65), Expect = 2.2
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 81 KGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQEHYAGRIPLVPDGPAF 140
+G+GR P S RT G E + PG ++D P +S + ++ +P VPD
Sbjct: 1396 RGRGRRGRPPS---RTTG---TRETAVPGPLGIEDISPNLSPDDKSFSRVVPRVPDSTRR 1449
Query: 141 VGTEAKALSYSCLPNSASPFPSSASGGRQGRQP 173
A AL S P + S G P
Sbjct: 1450 TDVGAGALRRSDSPEIPFQAAAGPSDGLDASSP 1482
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 29.6 bits (65), Expect = 2.2
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 39 SKGRAQRQAVVQLPVRKRPTSGETGQTKGSEKCDLGV----VEALGKGKGRSELPHSSNG 94
SK +A++ + ++RP ETG++ G+ + + VEA G G P S
Sbjct: 177 SKAKAEKPPLSASSPQQRPPEPETGESAGTSRAATPLPSLRVEAEAGGSGARTPPLSRRK 236
Query: 95 RTKGGFDLHEGS--DPGQQPVQDRVP-GVSLVQEHYAGRIPLVPDGPAFVGTEAKALSYS 151
+ G+ + GQ P D P +L H A + PD V + +L++S
Sbjct: 237 AVDMRLRMELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHKSPDPFGAVAAQKFSLAHS 296
Query: 152 CL 153
L
Sbjct: 297 ML 298
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens]
Length = 2961
Score = 29.6 bits (65), Expect = 2.2
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 111 QPVQDRVPGVSLVQEHYAGRI-------PLVPDGPAFVGTEAKALSYSCLPNSASPFPSS 163
QP+ R S+V+EH+ + P D +GT+ K S S LP +A P++
Sbjct: 1454 QPLNKRQRTSSVVEEHFQASVSPTEAAPPATGDQSPGLGTQPKLPSSSGLP-AADVSPAT 1512
Query: 164 A----SGGRQGRQPPFP-----LLPFSSPCLSTQLEAARLAYGLVDSLHAQVLHQSLSWG 214
A S R+PPF LL F S + + + Y ++ + + QSLS
Sbjct: 1513 AEEPLSPSTPTRRPPFTRGRLRLLSFRSMEEARLVPTVKEKYPVLKDVMDFIKDQSLSHR 1572
Query: 215 PLAWALS 221
+ LS
Sbjct: 1573 SVVKVLS 1579
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 29.3 bits (64), Expect = 2.8
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 25/150 (16%)
Query: 29 PMTNTVSSGQSKGRAQRQAVVQL-----------PVRKRPTSGETGQTKGSEKCDLGVVE 77
P+T +SSG + Q V ++ P K P E G+ D V
Sbjct: 2259 PLTLVLSSGPASPPRQAIRVKRVSTFSGRSPPAPPPYKAPRLDEDGEASE----DTPQVP 2314
Query: 78 ALGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQ----PVQDRVPGVSLVQEHYAGRIPL 133
LG G G S + +G DL +P + P+Q+R P + L ++ P
Sbjct: 2315 GLGSG-GFSRV-RMKTPTVRGVLDLDRPGEPAGEESPGPLQERSPLLPLPEDGP----PQ 2368
Query: 134 VPDGPAFVGTEAKALSYSCLPNSASPFPSS 163
VPDGP + E++ YS +S+ P S
Sbjct: 2369 VPDGPPDLLLESQWHHYSGEASSSEEEPPS 2398
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 28.9 bits (63), Expect = 3.7
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 23 GSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRP-TSGETGQTKGSEKCDLGVVEALGK 81
G + PM ++ G ++ +R + + P+ + P +S G+ G+ EA GK
Sbjct: 81 GGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGK 140
Query: 82 GKGRSELP 89
+GR P
Sbjct: 141 PRGRDGRP 148
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 28.9 bits (63), Expect = 3.7
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 105 GSD--PGQQPVQDRVPGVSLVQEHYAGRIPLVP--DGPAFVGTEAKALSYSCLPNSASPF 160
GSD P QQ + G QE+ G P +P GP S S L N P
Sbjct: 754 GSDMLPAQQKMVPLPFGEHPQQEYGMGPRPFLPMSQGPG---------SNSGLRNLREPI 804
Query: 161 -PSSASGGRQGRQPPFPLLPFSSP 183
P + R PP PL P S+P
Sbjct: 805 GPDQRTNSRLSHMPPLPLNPSSNP 828
>gi|154759273 testis specific, 10 interacting protein [Homo sapiens]
Length = 556
Score = 28.9 bits (63), Expect = 3.7
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 22 AGSLQTRPMTNTVSSGQSKGRAQRQAVV---QLPVRKRPTSGETGQTKGSEKCDLGVVEA 78
+G L RP ++S + A +A + P R+R GQ G E D G V+
Sbjct: 231 SGVLPQRPRRGSISEEEQFSEATEEAEEGEHRTPCRRRAGCQRKGQISGEEASDEGEVQG 290
Query: 79 LGKGKGRS 86
+G S
Sbjct: 291 QSQGSSPS 298
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 28.9 bits (63), Expect = 3.7
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 5 GSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSGETGQ 64
G + S +L+G + + S +TR ++ +S S ++ + + + G G
Sbjct: 115 GGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174
Query: 65 TKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDP-GQQPVQDRVPGVSLV 123
+ S G E G G G S +++G +G ++ +P + +D + +
Sbjct: 175 SSSSSVVSSGGDEGYGTGGGGSS---ATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMD 231
Query: 124 QEH--YAGR-IPLVPDGPAFVGTEAKALSYSC 152
+ +GR P + +G + +K ++Y+C
Sbjct: 232 VDSTISSGRSTPAMMNGQGSTTSSSKNIAYNC 263
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 28.9 bits (63), Expect = 3.7
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 5 GSWQHSGLHTLLGFTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSGETGQ 64
G + S +L+G + + S +TR ++ +S S ++ + + + G G
Sbjct: 115 GGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174
Query: 65 TKGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDP-GQQPVQDRVPGVSLV 123
+ S G E G G G S +++G +G ++ +P + +D + +
Sbjct: 175 SSSSSVVSSGGDEGYGTGGGGSS---ATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMD 231
Query: 124 QEH--YAGR-IPLVPDGPAFVGTEAKALSYSC 152
+ +GR P + +G + +K ++Y+C
Sbjct: 232 VDSTISSGRSTPAMMNGQGSTTSSSKNIAYNC 263
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 28.5 bits (62), Expect = 4.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 128 AGRIPLVPDGPAFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLPFSSPCLST 187
+ R PL+ P++ G E + + +P S+SP P + S + PP P PC +
Sbjct: 139 SSRRPLL-SSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPP----PAPKPCKTV 193
Query: 188 QLEAARLAYG 197
A+ G
Sbjct: 194 TTSGAKAGGG 203
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 28.5 bits (62), Expect = 4.8
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 27/136 (19%)
Query: 57 PTSGETGQTKGS-EKCDLGVVEALGKGKGRSELPHSS--------NGRTKGGFDLHEGSD 107
P++G Q K +K + + G S +P G GGF+ E
Sbjct: 171 PSAGRERQPKEEGQKSSFSFSSGIDQSPGMSPVPLREPMKAPLCGEGDQPGGFESQEKEA 230
Query: 108 PGQQPVQDRVPGVSLVQEHYAGRIPLVPDGPAFV--GTEAKAL-------SYSCLPNSAS 158
G P + GV+ VQ + P+ PA GTE+ A+ + +P +
Sbjct: 231 AGGFPPAESRQGVASVQ--------VTPEAPAAAQQGTESSAVLEKSPLKPMAPIPQDPA 282
Query: 159 PFPSSASGGRQGRQPP 174
P S G QG PP
Sbjct: 283 PRASDRERG-QGEAPP 297
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 28.5 bits (62), Expect = 4.8
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 135 PDGPAFVGTEAKALSYSCLPNSASPFPSSASGG--------RQGRQPPFPLLPFSSPCLS 186
PD P + L S L ++ SP PS++ G R G P P P P +
Sbjct: 788 PDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQPPPPPPPPPPPMP 847
Query: 187 TQLEAARLAYGL 198
QLEA ++GL
Sbjct: 848 LQLEAHLRSHGL 859
>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
sapiens]
Length = 304
Score = 28.1 bits (61), Expect = 6.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 110 QQPVQDRVPGVSLVQEHYAGRIPLVPDGPAFVGTE---AKALSYSCLPNSASPFPSSASG 166
Q+P + VP ++Q+ A + +P+G AF E L + + F +SG
Sbjct: 37 QKPTEVPVPYEKMLQDQSALIVQGLPEGVAFKHPENYDLATLEWILEYTAGISFIIKSSG 96
Query: 167 GRQGRQPPFPL 177
QGR PP L
Sbjct: 97 EPQGRTPPLRL 107
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 28.1 bits (61), Expect = 6.3
Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 8 QHSGLHTLLG--FTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSGETGQT 65
+H G H +G S P+ + G ++R ++P+++ + +
Sbjct: 434 EHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSA 493
Query: 66 KGSEKCDLGVVEALGKGKGRSELPH------SSNGRTKGGFDLHEGSDPGQQ-PVQDRVP 118
+ LG G G G +E G+ G D + P Q P++ +
Sbjct: 494 AAAAASKLG-----GAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQ 548
Query: 119 GVSLVQEHYAGRI---PLVPDGPAFVGTEAK-------ALSYSCLPNSASPFPSSASGGR 168
G + P P G A GT A+ Y C +S PS G
Sbjct: 549 GGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGP 608
Query: 169 QGRQPPFPLLPFSSP 183
+ ++ PLLP +P
Sbjct: 609 RAQRNLLPLLPLLAP 623
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 28.1 bits (61), Expect = 6.3
Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 8 QHSGLHTLLG--FTFVAGSLQTRPMTNTVSSGQSKGRAQRQAVVQLPVRKRPTSGETGQT 65
+H G H +G S P+ + G ++R ++P+++ + +
Sbjct: 434 EHGGAHQQVGEGADDEGQSPHVLPLHGRQQGAGAGGMSRRLTAARVPLQRPAAAAASSSA 493
Query: 66 KGSEKCDLGVVEALGKGKGRSELPH------SSNGRTKGGFDLHEGSDPGQQ-PVQDRVP 118
+ LG G G G +E G+ G D + P Q P++ +
Sbjct: 494 AAAAASKLG-----GAGPGSAEKADRHRRLLERRGQASGNPDTLRQTRPKQPAPLRRAMQ 548
Query: 119 GVSLVQEHYAGRI---PLVPDGPAFVGTEAK-------ALSYSCLPNSASPFPSSASGGR 168
G + P P G A GT A+ Y C +S PS G
Sbjct: 549 GGPAGYRAGLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGP 608
Query: 169 QGRQPPFPLLPFSSP 183
+ ++ PLLP +P
Sbjct: 609 RAQRNLLPLLPLLAP 623
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 28.1 bits (61), Expect = 6.3
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 41 GRAQRQAVVQLPVRKRPTSGETGQTKGSEKCDLGVVEALGKGKGRSEL 88
G QR+ PV PT+G TGQ +G+ G+ +G E+
Sbjct: 258 GTGQRRGTAAAPV---PTTGGTGQRRGTAAAPAPTSTGTGQRRGSEEM 302
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 28.1 bits (61), Expect = 6.3
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 35/195 (17%)
Query: 28 RPMTNTVSSGQSKGRAQR--QAVVQLPVRKRPTSG------ETGQTKGSEKCDLGVVEAL 79
RP + T +G++ +AQ Q+ V+ P + +S + K E+ D V++
Sbjct: 394 RPGSET-DAGRAVSQAQESVQSKVKGPGKMSHSSSGPASVSQLSSWKTPEQPDPVWVQSS 452
Query: 80 GKGKG------RSELPHSSNGRTKGG-FDLHEGSDPGQQPVQDR--VPGVSLVQEHYAGR 130
GKG R++LP SS + G F + P ++P + + A
Sbjct: 453 VSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAA 512
Query: 131 IPLVPDGPAFVGTEAKALSYSCLPN-----------------SASPFPSSASGGRQGRQP 173
PA A AL+ + P +A+P ++++ ++P
Sbjct: 513 AAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKP 572
Query: 174 PFPLLPFSSPCLSTQ 188
PL+ S PC + Q
Sbjct: 573 SVPLIQASRPCPAAQ 587
>gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [Homo
sapiens]
Length = 1755
Score = 28.1 bits (61), Expect = 6.3
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 150 YSCLPNSASPFPSSASGGRQGRQPPF-----PLLPFSSPCLSTQLE 190
YS L N AS F SGG + R P LL S C T+LE
Sbjct: 1607 YSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQTELE 1652
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 37 GQSKGR--AQRQAVVQLPVRKRPTSGETGQTKGSEKCDLGVVEALGK-------GKGRSE 87
G+S+ R A+R++ + PVR+R S + G + + G+ RS
Sbjct: 613 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSR 672
Query: 88 LPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQ 124
P +GR++ G + P + R SLV+
Sbjct: 673 TPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVR 709
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 27.7 bits (60), Expect = 8.2
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 97 KGGFDLHEGSDP-------GQQPVQDRVPGVSLVQEHYAGRI--PLVPDGPAFVGTEAKA 147
K FD GSD G P Q R PG+SLV+E+YA + + + A + + K
Sbjct: 757 KDVFDFIPGSDQLNVISCQGLAPSQGR-PGLSLVKENYAELLEDAFLKNVTAQICIDKKC 815
Query: 148 LSYSCLPNSASP 159
Y+C +SP
Sbjct: 816 PDYTCPITFSSP 827
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 27.7 bits (60), Expect = 8.2
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 135 PDGPAFVGTEAKALSYSCLPNSASPFPSSASGGRQGRQPPFPLLPFSSPCLSTQLEAA 192
P G + +G + + S P+S P SS+S PP PLL S L L A
Sbjct: 797 PPGKSSLGLDNSLSTSSEDPHSGCPSRSSSSLSFHSTPPPLPLLQQSPATLPLALPGA 854
>gi|23503297 protease, serine, 35 [Homo sapiens]
Length = 413
Score = 27.7 bits (60), Expect = 8.2
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 66 KGSEKCDLGVVEALGKGKGRSELPHSSNGRTKGGFDLHEGSDPGQQPVQDRVPGVSLVQE 125
KGS+K +G+++ K G+ + R G D EG+ ++ +Q+R G +
Sbjct: 179 KGSKKLRVGLLKMRNKSGGKKRRGSKRSRREASGGDQREGT---REHLQERAKGGR--RR 233
Query: 126 HYAGRIPLVPDG-PAFVGTEAK 146
+GR + +G P+F T K
Sbjct: 234 KKSGRGQRIAEGRPSFQWTRVK 255
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,548,104
Number of Sequences: 37866
Number of extensions: 547967
Number of successful extensions: 1384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 35
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.