Search of human proteins with 239743897

Search of human proteins with 239743897

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743897 PREDICTED: hypothetical protein XP_002342987 [Homo
sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749625 PREDICTED: hypothetical protein XP_002347104 [Homo ...   189   3e-49
gi|239743897 PREDICTED: hypothetical protein XP_002342987 [Homo ...   189   3e-49
gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo ...   172   5e-44
gi|110349799 testis-specific protein kinase 2 [Homo sapiens]           30   0.32 
gi|60499001 pipecolic acid oxidase [Homo sapiens]                      27   2.7  
gi|155723000 mixed lineage kinase 4 [Homo sapiens]                     27   2.7  
gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo ...    27   3.5  
gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo ...    27   3.5  
gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo ...    27   3.5  
gi|11321636 tryptase delta 1 [Homo sapiens]                            26   6.0  

>gi|239749625 PREDICTED: hypothetical protein XP_002347104 [Homo
          sapiens]
          Length = 95

 Score =  189 bits (481), Expect = 3e-49
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI 60
          MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI
Sbjct: 1  MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI 60

Query: 61 LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 95
          LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 61 LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 95


>gi|239743897 PREDICTED: hypothetical protein XP_002342987 [Homo
          sapiens]
          Length = 95

 Score =  189 bits (481), Expect = 3e-49
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI 60
          MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI
Sbjct: 1  MDLRGISAASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQI 60

Query: 61 LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 95
          LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 61 LAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGRSC 95


>gi|239755109 PREDICTED: hypothetical protein XP_002346219 [Homo
           sapiens]
          Length = 115

 Score =  172 bits (436), Expect = 5e-44
 Identities = 85/87 (97%), Positives = 86/87 (98%)

Query: 9   ASSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 68
           + SVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS
Sbjct: 29  SQSVVASGGGQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILAVCDASS 88

Query: 69  RPRSTGIRTPRRLPWEIRLFRAGGRSC 95
           RPRSTGIRTPRRLPWEIRLFRAGGRSC
Sbjct: 89  RPRSTGIRTPRRLPWEIRLFRAGGRSC 115


>gi|110349799 testis-specific protein kinase 2 [Homo sapiens]
          Length = 571

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 55  RFPPQILAVCDASSRPRSTGIRTPRRLPWEIRLFRAGGR 93
           R PP+ ++V D   RPR    RTP+  P+  R    GG+
Sbjct: 374 RKPPRTVSVLDPYYRPRDGAARTPKVNPFSARQDLMGGK 412


>gi|60499001 pipecolic acid oxidase [Homo sapiens]
          Length = 390

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 18  GQIFESSQEDQELLLAMQILDLLLFAHFCLFSEALERRFP 57
           G +    +E+QEL      L      H CL SE L++RFP
Sbjct: 91  GLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFP 130


>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
          Length = 1036

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 44  HFCLFSEALERRFPPQILAVCDASSRPRSTGIRTPRRLP------WEIRLFR 89
           H CL  E        + LA  +A+  PR+ G R  RR+P      W +++ R
Sbjct: 195 HLCLVLEFARGGALNRALAAANAAPDPRAPGPRRARRIPPHVLVNWAVQIAR 246


>gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo
          sapiens]
          Length = 105

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 25 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 62
          Q+ QELL   Q+ DLLL  H  L   + E   P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50


>gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo
          sapiens]
          Length = 105

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 25 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 62
          Q+ QELL   Q+ DLLL  H  L   + E   P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50


>gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo
          sapiens]
          Length = 105

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 25 QEDQELLLAMQILDLLLFAHFCLFSEALERRFPPQILA 62
          Q+ QELL   Q+ DLLL  H  L   + E   P Q LA
Sbjct: 13 QDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLA 50


>gi|11321636 tryptase delta 1 [Homo sapiens]
          Length = 242

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 30 LLLAMQILDLLLFAHFCLFSEALERRFPPQIL---AVCDASSRPRSTGIRTPRRLPWEIR 86
          LLLA Q+L LLL A   L S A     P Q L    +      PRS       + PW++ 
Sbjct: 2  LLLAPQMLSLLLLALPVLASPAYVAPAPGQALQQTGIVGGQEAPRS-------KWPWQVS 54

Query: 87 L 87
          L
Sbjct: 55 L 55


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,484,223
Number of Sequences: 37866
Number of extensions: 123139
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 10
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.