Search of human proteins with 239743861

Search of human proteins with 239743861

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743861 PREDICTED: hypothetical protein XP_002342981 [Homo
sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743861 PREDICTED: hypothetical protein XP_002342981 [Homo ...   291   1e-79
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ...   287   2e-78
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    46   1e-05
gi|40353727 synaptopodin isoform A [Homo sapiens]                      42   2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       41   4e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       41   4e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens]             41   4e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    40   8e-04
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       39   0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     39   0.002
gi|115511036 alpha-kinase 3 [Homo sapiens]                             38   0.002
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           38   0.003
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H...    37   0.004
gi|45439357 elongin A2 [Homo sapiens]                                  37   0.004
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         37   0.004
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]            37   0.005
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap...    37   0.007
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]            37   0.007
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    36   0.009
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    36   0.009
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]    36   0.009
gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo ...    36   0.012
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ...    36   0.012
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ...    36   0.012
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ...    36   0.012
gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo ...    36   0.012
gi|150170699 kinesin family member 26A [Homo sapiens]                  36   0.012
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]                36   0.012
gi|71274109 nuclear factor of kappa light polypeptide gene enhan...    35   0.015
gi|189181750 human immunodeficiency virus type I enhancer bindin...    35   0.015

>gi|239743861 PREDICTED: hypothetical protein XP_002342981 [Homo
           sapiens]
          Length = 139

 Score =  291 bits (745), Expect = 1e-79
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
           MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL
Sbjct: 1   MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60

Query: 61  APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
           APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST
Sbjct: 61  APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120

Query: 121 LGAGFQPPLGRGGAGRGSG 139
           LGAGFQPPLGRGGAGRGSG
Sbjct: 121 LGAGFQPPLGRGGAGRGSG 139


>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
           sapiens]
          Length = 201

 Score =  287 bits (735), Expect = 2e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
           MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL
Sbjct: 1   MSTRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60

Query: 61  APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120
           APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST
Sbjct: 61  APVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFST 120

Query: 121 LGAGFQPPLGRGGAGRG 137
           LGAGFQPPLGRGGAGRG
Sbjct: 121 LGAGFQPPLGRGGAGRG 137


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 46/153 (30%), Positives = 62/153 (40%), Gaps = 19/153 (12%)

Query: 4    RPPRQATYQLCEGGKSPGKAF-RAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAP 62
            R P      L  GG +P K+  +   + GL+     E PP        G  E+      P
Sbjct: 1009 RSPEAGEKVLVNGGLTPPKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGP 1068

Query: 63   VRVLPNTAAEATAKRAPVPSAPLPA------ARSPRGPQP----LSPRSSWVRGMPGRGG 112
               +   A E + +RAP PSA + +      A  P GP P    L P +   R  P  GG
Sbjct: 1069 APTIGEPAPETSLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTE--RRAPETGG 1126

Query: 113  HQRPLFS---TLGAGFQPPLGRG---GAGRGSG 139
              R   +    LG+G + P+G G   G G GSG
Sbjct: 1127 APRAPGAGRLDLGSGGRAPVGTGTAPGGGPGSG 1159



 Score = 30.0 bits (66), Expect = 0.63
 Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 17  GKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRG------------RGEQVRTHLAPVR 64
           G+ P  A    P P     +P  +P  PS  A  G             G +  T  +P  
Sbjct: 775 GRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEG 834

Query: 65  VLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRG-MPGRGGHQRPLF 118
             P   A A  +  P P AP      P  P P +PR     G +P  G  ++P F
Sbjct: 835 AFPGGGA-AEEEGVPRPRAP------PEPPDPGAPRPPPDPGPLPLPGPREKPTF 882


>gi|40353727 synaptopodin isoform A [Homo sapiens]
          Length = 903

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 19  SPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
           SP  A    P P    R P   PP P    R    +  R         P +AA   A  A
Sbjct: 771 SPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPAR---------PGSAAVPGAAFA 821

Query: 79  PVPSAPLPA----ARSPRGPQPLSPRSSWVRGMP 108
           P+P +PLPA      SPR P P  PR    R  P
Sbjct: 822 PIPRSPLPAGPSSCTSPRSPLPAPPRPFLYRRSP 855



 Score = 27.7 bits (60), Expect = 3.1
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 16  GGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATA 75
           G ++PG   + + SP L+ R+  E  P P   +   R  + + H+  +   P        
Sbjct: 244 GIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI--MSRSPMVERRMMG 301

Query: 76  KRAPV----PSAPLPAARSPRGPQPLSPRSSWVRGMP 108
           +R+P     P     A  +       +P +SWVR  P
Sbjct: 302 QRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPP 338



 Score = 26.2 bits (56), Expect = 9.1
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 38  LETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPL 97
           L  PP       R  G Q     + +   P        ++AP P  P    RSPR  + +
Sbjct: 229 LAKPPSVVNRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHI 288

Query: 98  SPRSSWVR----GMPGRGGHQRPL 117
             RS  V     G       +RPL
Sbjct: 289 MSRSPMVERRMMGQRSPASERRPL 312


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 6   PRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRV 65
           P QAT Q    G +P KA  A P  G Q + P + PPGP+   R+       +   PV  
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPG-GQQRQGPPQKPPGPAGPTRQA------SQAGPV-- 610

Query: 66  LPNTAAEATAKRAPVPSAPLPAAR 89
            P T    T  + P PS P PA R
Sbjct: 611 -PRTGPPTT--QQPRPSGPGPAGR 631



 Score = 26.2 bits (56), Expect = 9.1
 Identities = 35/125 (28%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 19  SPGKAFRAQ-PSPGLQH--RNPLETPPGPSKAARR---------GRGEQVRTHLAPVRVL 66
           SPG+    Q PSPG     R   + P GP    R          G G Q +      R  
Sbjct: 427 SPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486

Query: 67  PNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQ 126
           P      +    P  S PLP         P  P S       G+G   RP+    GA   
Sbjct: 487 PQGQQHLSGLGPPAGS-PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA--- 542

Query: 127 PPLGR 131
           PP  R
Sbjct: 543 PPAAR 547


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 6   PRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRV 65
           P QAT Q    G +P KA  A P  G Q + P + PPGP+   R+       +   PV  
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPG-GQQRQGPPQKPPGPAGPTRQA------SQAGPV-- 610

Query: 66  LPNTAAEATAKRAPVPSAPLPAAR 89
            P T    T  + P PS P PA R
Sbjct: 611 -PRTGPPTT--QQPRPSGPGPAGR 631



 Score = 26.2 bits (56), Expect = 9.1
 Identities = 35/125 (28%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 19  SPGKAFRAQ-PSPGLQH--RNPLETPPGPSKAARR---------GRGEQVRTHLAPVRVL 66
           SPG+    Q PSPG     R   + P GP    R          G G Q +      R  
Sbjct: 427 SPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486

Query: 67  PNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQ 126
           P      +    P  S PLP         P  P S       G+G   RP+    GA   
Sbjct: 487 PQGQQHLSGLGPPAGS-PLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA--- 542

Query: 127 PPLGR 131
           PP  R
Sbjct: 543 PPAAR 547


>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
          Length = 962

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 37  PLETPPGPSKAARRG---RGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG 93
           P    PGP K A RG    G++  +   P R  P  AA A   R P P+A  PA    R 
Sbjct: 622 PQHAKPGPRKLAERGPQDSGDRAASPAGP-RKSPQEAAAAPGTREPCPAAQEPAPSEDRN 680

Query: 94  PQPLSPRSS 102
           P P+  RS+
Sbjct: 681 PFPVKLRST 689


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 21/136 (15%)

Query: 2   STRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLA 61
           S+ PP          G  PG      P P +    P   PP P                 
Sbjct: 129 SSAPPATPPTSGAPPGSGPGPT--PTPPPAVTSAPPGAPPPTP----------------- 169

Query: 62  PVRVLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTL 121
           P   +P T  +A     P  + P P     +GP P  P+   + G P  GG   P  ST 
Sbjct: 170 PSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGG--GPGLSTP 227

Query: 122 GAGFQPPLGRGGAGRG 137
           G   +PP   GG  RG
Sbjct: 228 GGHPKPPHRGGGEPRG 243



 Score = 37.4 bits (85), Expect = 0.004
 Identities = 38/147 (25%), Positives = 50/147 (34%), Gaps = 12/147 (8%)

Query: 5   PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAAR----RGRGEQV---- 56
           PP Q   Q       P +    QP P  Q     + PP P  +++    +G G       
Sbjct: 64  PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGS 123

Query: 57  ---RTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG-PQPLSPRSSWVRGMPGRGG 112
               +  AP    P + A   +   P P+ P     +P G P P  P S      P  GG
Sbjct: 124 APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGG 183

Query: 113 HQRPLFSTLGAGFQPPLGRGGAGRGSG 139
              P  +  G G  P  G G  G   G
Sbjct: 184 PPPPPAAVPGPGPGPKQGPGPGGPKGG 210


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 41/131 (31%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 19  SPGKAFRAQP------SPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR---VLPNT 69
           SP    RA P      SP  Q R+P+  PP PS   RR           P R   V P+ 
Sbjct: 349 SPSPPARAAPPCPPCQSPVPQRRSPV--PPCPSPQQRRSPASPSCPSPVPQRRSPVPPSC 406

Query: 70  AAEATAKRAPVP-SAPLPAARSPRGPQP----------LSPRSSWVR-GMPGRGGHQRPL 117
            + +  +R+PVP S P P  R P  P P            P S  V+ G  GR  +    
Sbjct: 407 QSPSPQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELA 466

Query: 118 FSTLGAGFQPP 128
                AG  PP
Sbjct: 467 EGAAYAGASPP 477


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 42/134 (31%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 6   PRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRV 65
           P +A         +P     AQP P  Q   PL  PP P+ AA       V     P R 
Sbjct: 145 PARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPP-PAPAA----PPAVAPPAGPRRA 199

Query: 66  LPNTAAEATAKRAPVPSAPLPAA----RSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTL 121
            P   A   A+  P+P  P P A    + P  PQP  P      G    GG  RP+  +L
Sbjct: 200 PPPAVA---AREPPLPPPPQPPAPPQQQQPPPPQPQPPPEG---GAVRAGGAARPV--SL 251

Query: 122 GAGFQPPLGRGGAG 135
               +   G GGAG
Sbjct: 252 REVVRYLGGSGGAG 265



 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 18/83 (21%)

Query: 19  SPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
           +P  A  A P P      P   PP    AA            AP R     AA ATA  +
Sbjct: 118 APAAAAAAAPPP-----TPAPPPPPAPVAAA-----------APARAPRAAAAAATAPPS 161

Query: 79  PVPSAPLPAAR--SPRGPQPLSP 99
           P P+ P P A+  +P    P +P
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAP 184


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 21  GKAFRAQPSPGLQH-RNPLE---TPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAK 76
           G+A R   S G    R P     TP    KA   G G++V   L  + +    A     +
Sbjct: 574 GRAARGPGSSGTDSTRKPASAVGTPDKAQKAPGPGPGQEVYFSLKDMYLENTQAVRPLGE 633

Query: 77  RAPVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQ---RPLFSTLGAGFQPPLGRGG 133
             P   +      SP+G  PL  RS  V G PG+  H    +P        F PP  +G 
Sbjct: 634 EGPQTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAPPKPKGE 693

Query: 134 A 134
           A
Sbjct: 694 A 694


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 38/116 (32%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 20  PGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAE--ATAKR 77
           PGK      SPGLQ    L  PPGPS   + G           V  LP    E      +
Sbjct: 80  PGKP--GYGSPGLQGEPGLPGPPGPSAVGKPG-----------VPGLPGKPGERGPYGPK 126

Query: 78  APVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGG 133
             V  A LP  R P GP P  P  + +  +PG+ G Q P  +    GF    G  G
Sbjct: 127 GDVGPAGLPGPRGPPGP-PGIPGPAGI-SVPGKPGQQGPTGAPGPRGFPGEKGAPG 180


>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
           sapiens]
          Length = 954

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 35  RNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRGP 94
           ++P  TP  P  A+     E          V P+  +  +    P+P+ P P AR+P  P
Sbjct: 595 KSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPSYLSVPLPAEPSPGARAPWEP 654

Query: 95  QPLSPRSSWVRGMPGRGGHQRPLFSTLG 122
            P +P + W     G G  +R   + LG
Sbjct: 655 TPSAPPARW-----GHGARRRCDLALLG 677


>gi|45439357 elongin A2 [Homo sapiens]
          Length = 753

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 28  PSPGLQHRNPLE-TPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAPVPSAPLP 86
           PS   +HR     TPPG  +   R    + R      R+ P  A     + +P  +APL 
Sbjct: 122 PSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAP--ADSGRYRASPTRTAPL- 178

Query: 87  AARSPRGPQPLSPRSSWVRGMPGRG 111
             R P GP+P +P        PGRG
Sbjct: 179 --RMPEGPEPAAPGK-----QPGRG 196


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 4   RPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPV 63
           R PR+  +    G  + G A    P P   H   L+ PPG  + +RRGR    R    P 
Sbjct: 905 RSPRRTHHWQHNGELAEGGAEPKDPPPPGPHSEDLKVPPGVVRKSRRGR----RRKYNPT 960

Query: 64  RVLPNTAAEATAKRAPVPSA--PLPAARSPRGP 94
           R   ++  + T + +P   A  PLP    P  P
Sbjct: 961 RNSNSSRQDITLEPSPTARAAVPLPPRARPGRP 993


>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 24/108 (22%)

Query: 41  PPGPSKAARRGRGEQVRTH-----LAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG-- 93
           PPG   A R  R ++ R H     L+P+R    +    +A  A    A L A+ + RG  
Sbjct: 97  PPGVLGAGRSLRAQRSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTQEACLQASGTTRGWK 156

Query: 94  ----PQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRG 137
               P  L PRS       G  G      S L AG  P LG GG GRG
Sbjct: 157 YHALPLRLDPRS-------GHAG------SALKAGSCPRLGGGGRGRG 191


>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
           sapiens]
          Length = 254

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 5   PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR 64
           PP  A   +C     P  A        L+  NPL   P   +      G      +AP  
Sbjct: 71  PPATAPAVVCPAAAGPSAA-------SLRAANPLAVAPAAVRRPAATLGAASPAAVAPAA 123

Query: 65  VLPNTAAEATAKR-APVPSAPLPAARSPRGPQPLS 98
           V P  A+ + A   A  P+A  PAA SP    PL+
Sbjct: 124 VCPAAASPSAASLCAASPTAAAPAAASPAAAAPLA 158


>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 24/108 (22%)

Query: 41  PPGPSKAARRGRGEQVRTH-----LAPVRVLPNTAAEATAKRAPVPSAPLPAARSPRG-- 93
           PPG   A R  R ++ R H     L+P+R    +    +A  A    A L A+ + RG  
Sbjct: 97  PPGVLGAGRSLRAQRSRLHSRPPPLSPLRKPGGSNQPRSAAAAGTHEACLQASGTTRGWK 156

Query: 94  ----PQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGAGRG 137
               P  L PRS       G  G      S L AG  P LG GG GRG
Sbjct: 157 YHALPLRLDPRS-------GHAG------SALKAGSCPRLGGGGRGRG 191


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 43/144 (29%), Positives = 52/144 (36%), Gaps = 32/144 (22%)

Query: 3   TRPPRQATYQLCEGGKSPG-KAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLA 61
           +RPP      L  GG+S   K F     PG          P PS   R G  E  R  + 
Sbjct: 124 SRPPL-----LPPGGRSTSAKPFSPPSGPGRF--------PVPSPGHRSGPPEPQRNRMP 170

Query: 62  PVRVLPNTAAEATAKRAPVPSAPLPAARSPR--------------GPQPLSPRSSWVRGM 107
           P R  P+  ++  +   PVPS P P   SP                P P  P     RG 
Sbjct: 171 PPR--PDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGT 228

Query: 108 PGRGG--HQRPLFSTLGAGFQPPL 129
              GG   Q PL S+     +PPL
Sbjct: 229 ALGGGSIRQSPLSSSSPFSNRPPL 252



 Score = 33.1 bits (74), Expect = 0.075
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 28  PSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAP-------- 79
           P P   ++ P+ + P PS +++        +   P  + P+++      R P        
Sbjct: 284 PPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSS 343

Query: 80  -VPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGA 134
             P  P P    P  P P       VR  PGR G   P          PP+ R G+
Sbjct: 344 STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPP---------PPPVSRNGS 390



 Score = 32.3 bits (72), Expect = 0.13
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 19  SPGKAFRAQPSPGLQHRNPLETPPG-------PSKAARRGRGEQVRTHLAPVRVLPNTAA 71
           SPG++    P P  +   P+  PPG       P   +R G   +    L     LP+ + 
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSG 406

Query: 72  EATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVR 105
             + +  P P  PLP  R   G  P  P S+ +R
Sbjct: 407 VDSPRSGPRP--PLPPDRPSAGAPPPPPPSTSIR 438



 Score = 31.6 bits (70), Expect = 0.22
 Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 23/116 (19%)

Query: 3   TRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAP 62
           T PP         GG S  ++  +  SP   +R PL  PP PS+A      ++      P
Sbjct: 218 TPPPFPGNRGTALGGGSIRQSPLSSSSP-FSNRPPL--PPTPSRAL----DDKPPPPPPP 270

Query: 63  VRVLPNTAAEATA------KRAPVPSAPLPAARSPR----------GPQPLSPRSS 102
           V   P+   EA         + PVPS P P+A S            GP PL P SS
Sbjct: 271 VGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 43/144 (29%), Positives = 52/144 (36%), Gaps = 32/144 (22%)

Query: 3   TRPPRQATYQLCEGGKSPG-KAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLA 61
           +RPP      L  GG+S   K F     PG          P PS   R G  E  R  + 
Sbjct: 124 SRPPL-----LPPGGRSTSAKPFSPPSGPGRF--------PVPSPGHRSGPPEPQRNRMP 170

Query: 62  PVRVLPNTAAEATAKRAPVPSAPLPAARSPR--------------GPQPLSPRSSWVRGM 107
           P R  P+  ++  +   PVPS P P   SP                P P  P     RG 
Sbjct: 171 PPR--PDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGT 228

Query: 108 PGRGG--HQRPLFSTLGAGFQPPL 129
              GG   Q PL S+     +PPL
Sbjct: 229 ALGGGSIRQSPLSSSSPFSNRPPL 252



 Score = 33.1 bits (74), Expect = 0.075
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 28  PSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRAP-------- 79
           P P   ++ P+ + P PS +++        +   P  + P+++      R P        
Sbjct: 284 PPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSS 343

Query: 80  -VPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRGGA 134
             P  P P    P  P P       VR  PGR G   P          PP+ R G+
Sbjct: 344 STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPP---------PPPVSRNGS 390



 Score = 32.3 bits (72), Expect = 0.13
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 19  SPGKAFRAQPSPGLQHRNPLETPPG-------PSKAARRGRGEQVRTHLAPVRVLPNTAA 71
           SPG++    P P  +   P+  PPG       P   +R G   +    L     LP+ + 
Sbjct: 350 SPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSG 406

Query: 72  EATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVR 105
             + +  P P  PLP  R   G  P  P S+ +R
Sbjct: 407 VDSPRSGPRP--PLPPDRPSAGAPPPPPPSTSIR 438



 Score = 31.6 bits (70), Expect = 0.22
 Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 23/116 (19%)

Query: 3   TRPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAP 62
           T PP         GG S  ++  +  SP   +R PL  PP PS+A      ++      P
Sbjct: 218 TPPPFPGNRGTALGGGSIRQSPLSSSSP-FSNRPPL--PPTPSRAL----DDKPPPPPPP 270

Query: 63  VRVLPNTAAEATA------KRAPVPSAPLPAARSPR----------GPQPLSPRSS 102
           V   P+   EA         + PVPS P P+A S            GP PL P SS
Sbjct: 271 VGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326


>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
          Length = 753

 Score = 36.2 bits (82), Expect = 0.009
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 15  EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEAT 74
           + G  P  + +   SP +    P   PP  S  +       V    AP   L   A+ A 
Sbjct: 302 KNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAP 361

Query: 75  AKRA--PVPSAPLPAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQPPLGRG 132
           +  +  P P A   A  +P GP    PR   V+   G GG         G G        
Sbjct: 362 SHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGS-------GGGGSSSSSNS 414

Query: 133 GAGRGSG 139
            AG G+G
Sbjct: 415 SAGGGAG 421


>gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo
           sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 19/135 (14%)

Query: 5   PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR 64
           P RQ+ Y L      P   F    SP LQ R P      PS  +R               
Sbjct: 149 PSRQSQYSLLSFRGRPRFRFPCLGSPFLQSRKPSVGTSLPSVGSRS-------------T 195

Query: 65  VLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRG---MPGRGGHQRP-LFST 120
            LP  + E   + APVP      ++SP GP    PR  W+ G    P     +RP L+  
Sbjct: 196 SLPPESEEWELREAPVPGG-RGQSKSPAGPPSAQPR-CWLSGHTSQPVPVPARRPELWCW 253

Query: 121 LGAGFQPPLGRGGAG 135
              G +   G+GG G
Sbjct: 254 EPEGTRDTSGKGGCG 268


>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
           sapiens]
          Length = 400

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 26  AQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR-------VLPNTAAEATA--- 75
           AQ   GL+ R PLE  P P  A       ++R  LAP R            A EA A   
Sbjct: 215 AQAQTGLRRRRPLELVPRP--ALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGL 272

Query: 76  ---KRAPVPSAPLPAARSPRGP--------QPLSPRSSWVRGMPGRGGHQRPLFSTLGAG 124
              K AP P     A    RG         +   PR        GRG    P FS +  G
Sbjct: 273 WRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGG 332

Query: 125 FQPPLGRGGAGRG 137
            + P    G  RG
Sbjct: 333 GESP-DPAGCSRG 344


>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
           sapiens]
          Length = 529

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 40/137 (29%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 5   PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR 64
           P  +  Y+    G+S  + FR         R P  TP G         G + RT LAP  
Sbjct: 62  PASRDWYRQRRAGRSLIRQFR---------RTPEATPQGRL-------GLESRTRLAPCA 105

Query: 65  VLPNTAAEATAKRAPVPSAPLPAARSPR--GPQPLSPRSSWVRGMPGRGGHQRPLFSTLG 122
           + P+       +  P P+ P   AR  R  G   LSPR     G+  R G  R    T  
Sbjct: 106 LRPDRFPRRFPEPPPQPAPPAGGARKERDAGAADLSPRRPGRSGVARRPGDAR----TQS 161

Query: 123 AGFQPPLGRGGAGRGSG 139
           AG +      G G G G
Sbjct: 162 AGPERRAHLPGPGAGPG 178


>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
           sapiens]
          Length = 400

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 26  AQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR-------VLPNTAAEATA--- 75
           AQ   GL+ R PLE  P P  A       ++R  LAP R            A EA A   
Sbjct: 215 AQAQTGLRRRRPLELVPRP--ALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGL 272

Query: 76  ---KRAPVPSAPLPAARSPRGP--------QPLSPRSSWVRGMPGRGGHQRPLFSTLGAG 124
              K AP P     A    RG         +   PR        GRG    P FS +  G
Sbjct: 273 WRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGG 332

Query: 125 FQPPLGRGGAGRG 137
            + P    G  RG
Sbjct: 333 GESP-DPAGCSRG 344


>gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo
           sapiens]
          Length = 424

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 19/135 (14%)

Query: 5   PPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVR 64
           P RQ+ Y L      P   F    SP LQ R P      PS  +R               
Sbjct: 149 PSRQSQYSLLSFRGRPRFRFPCLGSPFLQSRKPSVGTSLPSVGSRS-------------T 195

Query: 65  VLPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRG---MPGRGGHQRP-LFST 120
            LP  + E   + APVP      ++SP GP    PR  W+ G    P     +RP L+  
Sbjct: 196 SLPPESEEWELREAPVPGG-RGQSKSPAGPPSAQPR-CWLSGHTSQPVPVPARRPELWCW 253

Query: 121 LGAGFQPPLGRGGAG 135
              G +   G+GG G
Sbjct: 254 EPEGTRDTSGKGGCG 268


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 15   EGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEAT 74
            +G ++PG+  RA P  G+   +P     GP+ A R G  + V     PV         A 
Sbjct: 1450 KGREAPGRPPRAVPKLGVPPSSPTH---GPAPACRSGAAKAVGAPKPPVGGGKGRGLVAG 1506

Query: 75   AKRAPVPSAPLPAA----RSPRGP---QPLSPRSS-WVRGMPGRG---GHQRPLFST--- 120
              RA  PS  L  A    RSP GP      +PR+   V    GRG   G ++ L +    
Sbjct: 1507 GSRALGPSVKLSTASVTGRSPGGPVAGPRAAPRAGPSVGAKAGRGTVMGTKQALRAAHSR 1566

Query: 121  ---LGAGFQPPLGRGGAGRGS 138
               L A   P  GRGG+  GS
Sbjct: 1567 VHELSASGAP--GRGGSSWGS 1585


>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
          Length = 639

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 3   TRPPRQATYQLCEGGKSPGKAFRAQP--SPGLQHRNPLETPPGPSKAARRGRGEQVRTHL 60
           T PPR AT        SP ++    P  +         + P GPS            T  
Sbjct: 72  TGPPR-ATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQ 130

Query: 61  APVRVLPNTAAEATAKRAPVPSAP----LPAARSPRGPQPLSPRSSWVRGMPGRGGHQRP 116
           AP R  P T +  T    P P+ P    +PA  +PR P P  P SS    +P     + P
Sbjct: 131 APTRPAPTTLSTTT---GPAPTTPVATTVPAPTTPRTPTPDLPSSSNSSVLPTPPATEAP 187

Query: 117 LFSTLGAGFQPPLGR 131
             S+   G Q P+ +
Sbjct: 188 --SSPPPGHQWPVAK 200


>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
           in B-cells inhibitor, epsilon [Homo sapiens]
          Length = 500

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 23/104 (22%)

Query: 4   RPPRQATYQLCEGGKSPGKAFRAQPSPGLQHRNPLETPPGPSKA-----ARRGRGEQVRT 58
           RPPR A   LC+    PGKA R    P     +P +T P P++A     AR+G  E   +
Sbjct: 100 RPPR-AGRPLCQADPQPGKAARRSLEP-----DPAQTGPRPARAAGMSEARKGPDEAEES 153

Query: 59  H-------LAPVRVLP-NTAAEATAKRAPVPSAPLPAARSPRGP 94
                   L  +R LP +T+A A+    P   +P P    P GP
Sbjct: 154 QYDSGIESLRSLRSLPESTSAPAS---GPSDGSPQPCTHPP-GP 193


>gi|189181750 human immunodeficiency virus type I enhancer binding
           protein 3 b [Homo sapiens]
          Length = 2405

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 20  PGKAFRA-QPSPGLQHRNPLETPPGPSKAARRGRGEQVRTHLAPVRVLPNTAAEATAKRA 78
           PG    A Q SP  +   P +  PGPS   R G  E+      P +  P    EA+   +
Sbjct: 38  PGSGTAATQESPAQELLAP-QPFPGPSSVLREGSQEKTGQQQKPPKRPP---IEASVHIS 93

Query: 79  PVPSAPL-PAARSPRGPQPLSPRSSWVRGMPGRGGHQRPLFSTLGAGFQP 127
            +P  PL PA  SP  P+ L   S+W    P R G   P  S +  G  P
Sbjct: 94  QLPQHPLTPAFMSPGKPEHLLEGSTWQLVDPMRPG---PSGSFVAPGLHP 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,690,689
Number of Sequences: 37866
Number of extensions: 591788
Number of successful extensions: 4246
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 610
Number of HSP's that attempted gapping in prelim test: 3357
Number of HSP's gapped (non-prelim): 1368
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.